ddx20 (ddx20)


Basic Information

Item Value
gene id ddx20
gene name ddx20
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66269637 ~ 66276483 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566966.2
ACAAACAGGGACACAAAAAAGAAAACGTCTAATAACGAGAAACAGCAACATCTCGCGATACTACCGGGTTTGTTTGAAACATGGCTTCCTCAATGAAGAAGGCTGCCCACGATATTGAAACGCGAAAACGGACTGATGATGTTGTCTTGTCGGGCGGTATCGACTTCAACGCCCTGTTGTTGTCGCAGCCCGTGCTCGATGGACTGGCGGCTTCTGGATTCAAGAAACCGTCTCCAATCCAGCTCAAAGCCATTCCGTTGGGGCGATGCGGACTCGATCTGATAGTGCAGGCCAAGTCTGGCACAGGGAAGACCTGTGTGTTCTCTGCCATCGCCCTGGACTCTCTGGTAATGGAGAACACTACGACACAGGTGCTGGTGCTAGCCCCGACCCGTGAGATAGCAGTGCAGATCCACTCTGTGGTGATGGCTATAGGCAGTGCCATGGAGGGCCTGCAGTGTCATGTCTTCATTGGGGGGACGCCCGTCAGCCAGGACAAGATCAGTCTCAAGAAGTGCCACATCGCTGTGGGATCACCAGGACGTATCAAGCAGCTGATTGAGCTGGGTCTTTTGGTTACCGCCAGCATCCGTCTGTTTGTGCTGGACGAGGCTGACAAACTACTGGAGGAAGGCAGCTTCCAGGACCAGATcaaTTGGATATTCTCCTCTCTACCGGTCAACAAACAGATGTTAGCCCTGTCTGCCACCTACCCAGAATCCCTTGCCCAGCACCTGGCCCACTACATGAGAGAGCCCACCTTCGTCAGACTTAACCCCTCCGACCCCGGACTCATAGGTTTGAAGCAGTACTACAGGCTGGTGCACTCCCATGCCATGCCCCATAAGGTGTTTGAGGAGAAGGTTCTGCTCCTGCTGGAGCTGTTCAGTAAAGTTCCCTTCAATCAAGCTCTGGTGTTCTCCAATCTGCACACCAGGGCTCAGCATTTAGCAGACATCCTGTCCTCGAAGGGCCTTCCTGCTGTCTGTATCTCAGgtagtctGAGTCAGGACCAGCGAATGGAGGCCATGTCTAAACTGAAGCAGTACCAGTGTAGAGTACTCATCTCTACTGACCTGACCTCCAGAGGTATAGATGCTGAGAAGGTGAATCTGGTGATCAACCTGGATGTTCCTCAGGACTGGGAGACCTACATGCACCGTATAGGACGAGCCGGACGCTTTGGTACACACGGGCTGGCAGTGACCTACTGTTGCCATGGCGAGGAGGAGAACAAGATGATGGCCATCGCTCAGAAGTGCAACCTAATTCTTTGCGCTCTACCAGACCCCATAGAGCCAGGGCTGATGCAGGAGCCCTGTGACTGGGATATCACTGTGGAGGCCCTGACACCAGGGACAAATTCCCAGGTGTTCCCCAAGACAGAGCGAAGGAGACGGGCTAAGACCGAATCCCCAGCCCCTAAACCCATCAGGGATCAGGACCCCAGCCCTGTCCACCCAGAGAGCACTGAACCCAGCCGACCATGTAAGAGCCAGCACACAGCCAGTCCTGTGGCTAAGGCTGGTCTGAAGCACAAAAATGCATCCCCTGCCCTGGATGTCCTCCTACCCCCTCCCAAGGCTTCAGTAGTCCCTGGGGCCTCCCTAGCTCTCTCCCGTAAAGAGCAACAGGATGCCCTGCCAAAGATCCCTCCGCTCAGCGCCTTCAAGAGTCAAAGGTCAGGGATCATGACCTTCCAGGAGGCAGAGCTGGACTTCCAGAGCTTCATcagggaggggctgggaaggacCGTGGAGGTCATCCGACAGTTCAGAGGTCACGGAGACGACGGCGAGGGATTTAACGGTCAGCACGGCTACGAGGAGTCTCATACACTCCAGGATGACGATgtgccactcacacacacacacatgacacgGAACGGAGAGCGTCCACCAACACCCACACAGCTGCTTCTAAAGACGAACTCTGACCCGTCACCTTCGGAGTCGACTTCTGATGGGTCCAGCTCTGACTGTGACATGGAGGAAGACCGGCAGGCTGACGAGTCAACGCAGAGCTCCACAGATCAGACCAGAGGAGCTGAACACAAACCAATCGTTCCGATTCAAACTCAATCTGCACAGCAATCCACAGTCATGGATGGGGCAAGGAAACCAAAGTGTACGCCACCTAGAAGCCAACCCAACTCACCGTCTGTACCCCATCCTAGCCACCACAGATCCCCCAGACCAGAGGGGAGAGCTGTGAGTACAAACCCCGGGGAGGGGGAACCTTTGTTGTGGAAGGCAAAGGGCAGAGAGGCTACAGCACAGCAGTGGAGTAGGGAGACGGCTAAGAAAGTcaaaggggagaagagagatattttagaggagaggaagatgccTGAGAATcgagggagtgagaggaagagggacagagtgagTGAGGTAGAGCAGGAGGAGGATGATGGTGAGGGTTATGAGGGCTACTGGAGGGCCTACTACAGAGCTTGGGAGGATTACTACGCCTCCATGCCCCCCTCTCACCACCAGGGTtaccatggctaccacagtatggCGTCCAGCTGGATGGCTGCCTACCGTATGAACTCTGTGTACATGGAGGAACTGTTAAAACACTAACACAGGGCTTCACACGTAGACCAGAGAAACTGAGTTAAACTTCTGCCAAAGACATGAGCTATTCTTTCCACTCAATGTCTGCTGTTATCAGTGAAACAAACAAAGTTAAAGATGGTTAAAACATTAAAGATCTCTTTGTAGGAGCAGCAAACGGTGAACAAACATGAATCATTTCTTCAGTTATTTTAAGGAAGTCACTGATTTCCACGTAACAATGTTATTTTGCTGTACACGTTTTGGTCTTTAATTTTGAATGTAAAATAGTGGATTTACGCTAATATTATTGCATGGTAAATGAATGACTTTACTACGTGcattattattatgcctactttGTGTACATGTGTACGTACTTTTATAATAAAGATCCTTTTGTTCAA

Function

symbol description
ddx20 Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in spliceosomal snRNP assembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in cytosol. Predicted to be part of SMN complex. Orthologous to human DDX20 (DEAD-box helicase 20).

NR:

description
probable ATP-dependent RNA helicase DDX20 isoform X1

GO: NA

KEGG:

id description
K13131 DDX20, GEMIN3; ATP-dependent RNA helicase DDX20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566966.2 True 2968 mRNA 0.52 11 66269637 66276483

Neighbor

gene id symbol gene type direction distance location
LOC110492562 LOC106568106 coding downstream 528861 65715711 ~ 65754610 (-)
cttnbp2nlb cttnbp2nl coding downstream 564859 65660280 ~ 65704778 (-)
apeh apeh coding downstream 625496 65633130 ~ 65644141 (-)
tlr9 tlr9 coding downstream 641144 65623175 ~ 65628493 (-)
LOC110518541 LOC106566519 coding downstream 649345 65131650 ~ 65620292 (-)
LOC110492566 LOC106566511 coding upstream 4473 66280956 ~ 66296439 (-)
b4galt3 b4galt3 coding upstream 27106 66303589 ~ 66308067 (-)
bgnb bgn coding upstream 43939 66320422 ~ 66345643 (-)
si:dkey-32e6.6 LOC106566508 coding upstream 105520 66382003 ~ 66421064 (-)
tsr2 tsr2 coding upstream 157465 66433948 ~ 66436902 (-)
G1402588 NA non-coding downstream 63397 66205628 ~ 66206240 (-)
G1402585 NA non-coding downstream 68134 66201159 ~ 66201503 (-)
G1402550 NA non-coding downstream 120663 66148637 ~ 66148974 (-)
G1402492 NA non-coding downstream 224237 66045024 ~ 66045400 (-)
G1402485 NA non-coding downstream 233753 66035339 ~ 66035884 (-)
G1402620 NA non-coding upstream 23163 66299646 ~ 66301517 (-)
G1402659 NA non-coding upstream 82958 66359441 ~ 66376840 (-)
cdk16 cdk16 non-coding upstream 165731 66442214 ~ 66479142 (-)
G1402707 LOC106566505 non-coding upstream 214174 66484901 ~ 66494667 (-)
G1402728 NA non-coding upstream 248243 66524726 ~ 66525092 (-)
G1401617 NA other downstream 633265 65635482 ~ 65636372 (-)
si:ch211-117c9.5 LOC106566567 other downstream 1821165 64445355 ~ 64485638 (-)
G1400578 NA other downstream 1959181 64309883 ~ 64310456 (-)
G1400565 LOC106575828 other downstream 1983644 64285628 ~ 64285993 (-)
G1402686 srpk3 other upstream 149068 66425551 ~ 66426322 (-)
G1403498 NA other upstream 1166938 67443421 ~ 67444179 (-)
LOC118939478 LOC106566484 other upstream 2514706 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 2926803 69203286 ~ 69207158 (-)

Expression


Co-expression Network