LOC110492566 (LOC106566511)


Basic Information

Item Value
gene id LOC110492566
gene name LOC106566511
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66280956 ~ 66296439 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947568.1
CTGTCAGTGAGCTAAGTGGCTGGCGATACAGGGAAGGAGAGCAGATAATGAAGCGGAGCTCACCAGCGGCAGTCTCCTCTCATTGTCTCAATGGCTGCACACGCGTTCCTCCTGCTCTCCTCTGCCTTGCTGTCTGCCCTCAGCCAGCCCACCCTGTCCTTTGATCAAGTGCCTGCACTCCTAGAGAGAAGCACAGAAGTCGACTATGTTACAGAGGTCGCATACCCAGCTGTGAGAATCAGAGCGGgTGGTATTGATGGAATGAGCTTGGTGGCTGAGGGTTATGTGCCCACTGAGGAAAGCACACTCAAAAGATTACTGAAGcgGGACAGCTGGCACCACCTCAACCAGCATGGTCATGACAAAGGCAAGAGAAAGCTGCTCCAGTCCCCCATATTCGGGCCCTACTCTCCTCTGAGCGTGGCCTACAATGGCAAGACCTGCATCCTGTTCAAAGCCAAGCGCCTGGCCGTCCGCTACAAGAACCACACCTTCATAGACCTGACGGAGAAGACCTTCGGACCCAACGCCCCTGTGGACACCAAGGGATCCATCTGCACCAAGGAGAAGGCTACGCTATCACTGAAATTTGGCGATGTGGAGGACCTCAGGGGACTTGTTATCAGGTTGCAGATGTCCAACACGTTCTATGAGTCGGCAGGGCAGAACTGGTTCACCTTAGACAGCGTCCACATCCACTACAACTGGACCCATGAGGCTACATTCAACGCCAGCGAGGTGTACGCCCCCGCCACCTCCTCCTATCACTGCCAGCATGTCAGCAGTCAGCACAAATATGACACCCTCCTGGTGCCCAGCTCACACACCGACACCTCAGCTAACTGGCACATCACGTTTACTGACTTCCAGatccagGCGTTCAACGTCATGTCTGATAAGTTTGCGTCGGCCAGCGACTGTGCCACCTTCCTGACCCCAGCCATACTGATGGGCCTGGTGACCTCTCTGATCCTGCTGTTGGTGCTGGCCTACGCTCTGCACATGGTGGTGCACCTCAAACACATCGACCGCTATGAGGAACATAAAGCTATGGTGTATTTCCCACGCAGGCTGAGCAAAGCTCTAGAGCGTAGGGCCTCACAGCAGTACGAGCTACCTGACAAGAACTGCCTGTgagagtgggaggaagagagagggagaagatggagagtCGTGGATGCTGGTGAATGAAAGTGGGAAAAAGTTGCACccacactgttttccatgcttccAAATGTTTGTTTACTAGTGACAACTATTTTCACCTGTTGGCTTTTGCCTGTTCTCTATTATAAGACCAACATGTTAACATGTTAACAATACTAAGCTTTCACATTTTTTGAAGCATTAAAACTGTGTTTGTCTACCATCCTTCCTTTTTTCATTGACCTGAACCTTCACATTCATTTCCTGCCTAAGGTTATTGGATGTTAAAACCTCTTGATCGTGGGGTTGAAGGTCAGGAAGAGACCAGGGGCCCTGGAGGGACACAGTGTCACCAAGCTTTCACCTCAGCCAGGCACTGAAGCACCCGATTCAACAGTAAACGACTGCAGCTAACCCTGCCATCGTCCAACCCTGCTTAGGGGCCCTCAACCCTTAGCATAACTGGGCTTTGGTGTGTGGAGTCCCCACTCCCCATCCTAGCATTGACACATTGCCAAATTCATACCAATACAAGGAATCTTTTGTCGAATCTCATGGCATTTTCACTGAATTAGCTGCACTCTGTCATAAATTGAATAAGGTCGTCTAGCACAGTGTTTCTAAAATGGAGTGTGAGGACCCACTGGTAGATCACAGACACATCTTACTGGGTTAAGATAGTACTTGAGCTGGAATCTTGTTTGTGATAATCTGGAGGGTATCTCAAGAATTCTAGAGGGTTTTGGTGGTTCATGTCACAAAActatttgggaaccactggtctggCACCTGGCTGGAGTGAACTAGATTGGTCACTGTGGCTCTCCTGAACCTCTGGGGTTTCCCACCCTGCCCCTGGCGTAGACTTTTGGGACTTGAATGGACCAGCCGCCAGTCTGAGGGGTTCGACTAACTAGCACAACATGGGTTAGCCTGGCAGGCGCTAATGGCTAACTCTCAACACTAAAGACTAAACATGGAAATAAGCTGCACAAGACTGCCCTTCTGAGGGCAACGAACGACGCGGGTCTATAGGAAGATGTCACTCACTGAGAGTCTATGGAGTACGGACAAGGGAGGTGAAGGAGCTGCCAGCCTCGCTGCTGGGTTTTTGACTGCCAAAGTGAAGCTAAAGGATTTTCCATAACGCATGACAATGTGAACATGAGAAGTACAGTTACAATGTAAATAACAAATGAAAAACACTCAAATGTACAGATGTATCTCTCAGCTGAAGTTTTTTTTAATATACAGTGTAATCAAGAAATACTACTAGGTACAGGAAGGCTATTCTACTACTGCTCATAATCACAAGGATATACAGTGCTGTAGATATGTTAAGGTCGTATGATCATAGCTGTTTACTATCTTCAGATGGCGCACAATTACATAGTTATCAGTGAAACATTGTGCTATGAGGATCGGTGACAGTATCAATGCATATTTGTTTTTTTCTACAGTATTACCATATAACACTGTCTGTCTTATAATTGTCTTGAACTGGGCCAGACATGACACCCTAGAAGTACAGTCCAGTTTAAAGGTAGATTCAGCAGTATGACATCATTGTCCACAGTGGGGCGACTTCCTGCTTCACAGACACAATAACAGATTCAAATCTGCCAATATTTCCCTGTCTGGGGAAGAGCCAATAGAGGCAGTCTTGGCAGATTataattttgttgttgttgatttctgTAAGCGGGATGTCACCCTGCTGTGTGTGATGATGTCatattgctgagtctacctttgaTCCAACTGTGACTTTCCAGTACAAATGTAAACATAGGGACGATACTTATGGAATGCCGTCCGTCCGCAAGTACATATAGAGGCCATTATACTCCAGAGACAACACTAGCAACCAGTAACAACATCAGTAACTCACTATTACAGAATAACACTCAGCATGACAGAAAGTAGATCTTACATTCGATATGGCAGTTCTGTCAGTCTGTAGCAGTGTACTTTGGTCATAAATGTATCCTACAAACTATGAAACCAGTGGAGGAGGTTTCTCCATGGAACAATTTATGTAGTTTGATCAATAAACAATAATCAAATTAAA

Function

NR:

description
V-type proton ATPase subunit S1-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947568.1 True 3217 mRNA 0.47 6 66280956 66296439

Neighbor

gene id symbol gene type direction distance location
ddx20 ddx20 coding downstream 4473 66269637 ~ 66276483 (-)
LOC110492562 LOC106568106 coding downstream 540180 65715711 ~ 65754610 (-)
cttnbp2nlb cttnbp2nl coding downstream 576178 65660280 ~ 65704778 (-)
apeh apeh coding downstream 636815 65633130 ~ 65644141 (-)
tlr9 tlr9 coding downstream 652463 65623175 ~ 65628493 (-)
b4galt3 b4galt3 coding upstream 7150 66303589 ~ 66308067 (-)
bgnb bgn coding upstream 23983 66320422 ~ 66345643 (-)
si:dkey-32e6.6 LOC106566508 coding upstream 85564 66382003 ~ 66421064 (-)
tsr2 tsr2 coding upstream 137509 66433948 ~ 66436902 (-)
cdk16 cdk16 coding upstream 154653 66442214 ~ 66479142 (-)
G1402588 NA non-coding downstream 74716 66205628 ~ 66206240 (-)
G1402585 NA non-coding downstream 79453 66201159 ~ 66201503 (-)
G1402550 NA non-coding downstream 131982 66148637 ~ 66148974 (-)
G1402492 NA non-coding downstream 235556 66045024 ~ 66045400 (-)
G1402485 NA non-coding downstream 245072 66035339 ~ 66035884 (-)
G1402620 NA non-coding upstream 3207 66299646 ~ 66301517 (-)
G1402659 NA non-coding upstream 63002 66359441 ~ 66376840 (-)
G1402707 LOC106566505 non-coding upstream 194218 66484901 ~ 66494667 (-)
G1402728 NA non-coding upstream 228287 66524726 ~ 66525092 (-)
G1401617 NA other downstream 644584 65635482 ~ 65636372 (-)
si:ch211-117c9.5 LOC106566567 other downstream 1832484 64445355 ~ 64485638 (-)
G1400578 NA other downstream 1970500 64309883 ~ 64310456 (-)
G1400565 LOC106575828 other downstream 1994963 64285628 ~ 64285993 (-)
G1402686 srpk3 other upstream 129112 66425551 ~ 66426322 (-)
G1403498 NA other upstream 1146982 67443421 ~ 67444179 (-)
LOC118939478 LOC106566484 other upstream 2494750 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 2906847 69203286 ~ 69207158 (-)

Expression


Co-expression Network