si:dkey-32e6.6 (LOC106566508)


Basic Information

Item Value
gene id si:dkey-32e6.6
gene name LOC106566508
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66382003 ~ 66421064 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947572.1
ctctctctccacccaggtGTTTGTTAGTTTAAGGCAATGAGGACAGGActagagagggcaggagaggacagaaggggaaaggagaggagggcagaggacaggagaggaggggtgatctGTGTTTTCTGGAGAGATGAACGAAGGCCTTTGTTTAGAATGTGAGAAcatacttttttcccctctctctcactctccccacctctctctctcctctctgtgcactcctccttctcctcttccatcccctctTTTCTCACTCTTTATCCATTCTCATCTCTCACTTTTAGTTCTGCTGGTACAGTATCCTCTGGGGAGTGTGCTTAAGGAGTCCGGAGTCTCTTGGGAGTTCTGTTGTCCACGTCTCCTCTTCTGCTTCGCAGGTTTACTCTTTGCCTGATTTTTGCTTCTGCCGGTGCTGCTATATTCAGGAGGATCTTTGTTACTTCTCTTTACTCCAAGACTGGACTGGAGGTGGTTTCAGAAACACAGCCCAGGTCTCAAAGTTTTTCCTTGTCTATAGTCATTTTTTTCTTGGACTAACTATCCCAGTTAGTTTGTCTTGGACTATCCCAGTTAGTTTGTCTTGGACTGGGTTTTGGATTTGACCAGCCGTGGGCTCAGATCCAGAAACCTGACGTGGCGATGCTGAGATTTTgggttctgtgtctgtgtgtgagtgttctCAGTGTAGGCGTTCTAACTCTGATCCCCCAAAAACACGAGATAGAAAATGAGGTACAACACGATGTGGAACATGTGCATGGAACATGGACCATGGAACATGAAGCGAGGGAACCCGATAAAATCTATGCAGAGACTCTAGCAACCCACCAACCTGCCACATACACTCCTATTATGGACACACATGCCACAGTCCCAACTCTGACAGACATACCTCTTACAGAAACAACTGTGATAGGTACAGCTATTACGGAGTCAGACGTACCTGTGGTCGCCACATGTCTTTCATCAGCCCTACCCCTCACCTCATTACCGAATGATGAAGAAGGCAGGGATCAGGAAAAAGGCAGAGAGGACAAGAATCCAAGaattgaagaggaggaggagaaggggagagtgagggatgagcagatgagaaaggacagagagatggaggcgagcagagggaggagaggagtgacgGGAAGGAGACATGCAGCAACTGTAGAGGCCACTGCGTACAGAATGGCAGGTCTGGGGCGCCCCCTACCTGGCTGGAAGAAGCGAGGTACAAATGGGGGAGCTGAACAGGAAGGTGTTCTCAGGACCATACTAAAGGAACTACACAGTGATAAGGACAGACTAATGGACACAGAGaaggcagaggaagaggaagatgaggaggaagatgaagatgaagacgatgaagaggaagatgattctgaagaggaggaagaggaggaggaggaagaggaagaggaggaggaagaagaggggacagagtctcccaccaaTCAGACAGTAGCAAGGACCAGCTTCACAGAGTCTCTCCCAGGGACGTGTCAAACGTCTAACGGACAAATAAGCTGCAGGGGTAATGGCATGAATCACCTCCCAATCATCACCGACCTTGGGGTCACGACCCTGGACCTGGCAGAGAACAACATCAGTCTTATTGCCTCGCGGGGTTTCTCTGGTCTTCCCAACCTGGAGAGTATAGATCTGAGCAAAAACCGACTGGATGACGACTCACTCAGCCATCACCTCTTCTCTAATCTGACCCGGCTGAGGAGGCTCAACCTCGATGATAACCAGCTGACACGGATCCCCCTGCTGCCACCTTCACTGGGGGAGCTCACGATGAATGGCAACAAGATCACCAGACTCACCCCTTACAGCTTCAAAGgtcTGTTCCATCTGTTGTCTCTGGAGCTAGAGGAGAACCTTTTCCATGACGGCAACGTGTCCCCTTTGACCTTCAAGCCGCTGAAGAGGGTCCAGTACCTGTGCTTGGACATGAACAGGTTCCGCTCCCTCCCCCTCGGCCTGCCCCGCTCCCTACAGgagctgaGGATGCGTGATAACCAGTTACAGGAGGTACCAGAGGGGGTTCTGAGTGAATTGGCCAAACTGAGAGTTTTAGACCTTAGTCACAACCTGCTGCATGAGGGCAGCATCTCAGACCGGGCCTGGGTCAAACTAACttctCTTGAAGCCTTGGACCTCTCTCATAACAGCCTCACTTCAGTCCCCCTCTACCTACCCCGCCCTCTGCGTCAGCTGACCCTGCAACACAACTCCATTGGTCGAATCCCTGCGTATGTCTTTGGCCACCTGCGCCCCGGCCTAGAGTCCCTCCGTCTATCCCACAATGCACTAGGGGACGAAGGAGTGCAAGGAGTTTCTTTTGTGGGCATGTACCGATCGCTTGTTGAGCTCCTATTGGACAATAACCGTCTGGGGGCGGTGCCTCGCAGCGTGTGGCAGTTTAGGAACCTGCAGGTGCTGAGGCTCGACTACAACCAAATCAGGTCTGTGGCGGTGGGGTCGGTGTGTCACTCTCGTGTGGCGGTGCGTTCGGCCCTGGCCTCTCTCCACCTGGAGAACAACCTTATAGAGGAAGACATCCCCTCCACTACCTTCAGCTGTATTCAAGACCCTAGTAGTGTGGTCACACAGCCCCAGGAACACATACACGAGGTGTAGACCAGCTTCTCCATGTATAGATGTTCCACTGAACCATCATTAAACCTCCCTATTTCCCCACCTCCATTTCTTCACCAatcagctgttttgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgcaaaactgatagagacatacctcaagcgacttacagcagtaatcgcagcaaaaggtggcgctacaaagtattaacttaagggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttca
>XM_036947571.1
ctctctctctccacccaggtGTTTGTTAGTTTAAGGCAATGAGGACAGGActagagagggcaggagaggacagaaggggaaaggagaggagggcagaggacaggagaggaggggtgatctGTGTTTTCTGGAGAGATGAACGAAGGCCTTTGTTTAGAATGTGAGAAcatacttttttcccctctctctcactctccccacctctctctctcctctctgtgcactcctccttctcctcttccatcccctctTTTCTCACTCTTTATCCATTCTCATCTCTCACTTTTAGTTCTGCTGGTACAGTATCCTCTGGGGAGTGTGCTTAAGGAGTCCGGAGTCTCTTGGGAGTTCTGTTGTCCACGTCTCCTCTTCTGCTTCGCAGGTTTACTCTTTGCCTGATTTTTGCTTCTGCCGGTGCTGCTATATTCAGGAGGATCTTTGTTACTTCTCTTTACTCCAAGACTGGACTGGAGGTGGTTTCAGAAACACAGCCCAGGTCTCAAAGTTTTTCCTTGTCTATAGTCATTTTTTTCTTGGACTAACTATCCCAGTTAGTTTGTCTTGGACTATCCCAGTTAGTTTGTCTTGGACTGGGTTTTGGATTTGACCAGCCGTGGGCTCAGATCCAGAAACCTGACGTGGCGATGCTGAGATTTTgggttctgtgtctgtgtgtgagtgttctCAGTGTAGGCGTTCTAACTCTGATCCCCCAAAAACACGAGATAGAAAATGAGGTACAACACGATGTGGAACATGTGCATGGAACATGGACCATGGAACATGAAGCGAGGGAACCCGATAAAATCTATGCAGAGACTCTAGCAACCCACCAACCTGCCACATACACTCCTATTATGGACACACATGCCACAGTCCCAACTCTGACAGACATACCTCTTACAGAAACAACTGTGATAGGTACAGCTATTACGGAGTCAGACGTACCTGTGGTCGCCACATGTCTTTCATCAGTGTCTCTCTCAGCCCTACCCCTCACCTCATTACCGAATGATGAAGAAGGCAGGGATCAGGAAAAAGGCAGAGAGGACAAGAATCCAAGaattgaagaggaggaggagaaggggagagtgagggatgagcagatgagaaaggacagagagatggaggcgagcagagggaggagaggagtgacgGGAAGGAGACATGCAGCAACTGTAGAGGCCACTGCGTACAGAATGGCAGGTCTGGGGCGCCCCCTACCTGGCTGGAAGAAGCGAGGTACAAATGGGGGAGCTGAACAGGAAGGTGTTCTCAGGACCATACTAAAGGAACTACACAGTGATAAGGACAGACTAATGGACACAGAGaaggcagaggaagaggaagatgaggaggaagatgaagatgaagacgatgaagaggaagatgattctgaagaggaggaagaggaggaggaggaagaggaagaggaggaggaagaagaggggacagagtctcccaccaaTCAGACAGTAGCAAGGACCAGCTTCACAGAGTCTCTCCCAGGGACGTGTCAAACGTCTAACGGACAAATAAGCTGCAGGGGTAATGGCATGAATCACCTCCCAATCATCACCGACCTTGGGGTCACGACCCTGGACCTGGCAGAGAACAACATCAGTCTTATTGCCTCGCGGGGTTTCTCTGGTCTTCCCAACCTGGAGAGTATAGATCTGAGCAAAAACCGACTGGATGACGACTCACTCAGCCATCACCTCTTCTCTAATCTGACCCGGCTGAGGAGGCTCAACCTCGATGATAACCAGCTGACACGGATCCCCCTGCTGCCACCTTCACTGGGGGAGCTCACGATGAATGGCAACAAGATCACCAGACTCACCCCTTACAGCTTCAAAGgtcTGTTCCATCTGTTGTCTCTGGAGCTAGAGGAGAACCTTTTCCATGACGGCAACGTGTCCCCTTTGACCTTCAAGCCGCTGAAGAGGGTCCAGTACCTGTGCTTGGACATGAACAGGTTCCGCTCCCTCCCCCTCGGCCTGCCCCGCTCCCTACAGgagctgaGGATGCGTGATAACCAGTTACAGGAGGTACCAGAGGGGGTTCTGAGTGAATTGGCCAAACTGAGAGTTTTAGACCTTAGTCACAACCTGCTGCATGAGGGCAGCATCTCAGACCGGGCCTGGGTCAAACTAACttctCTTGAAGCCTTGGACCTCTCTCATAACAGCCTCACTTCAGTCCCCCTCTACCTACCCCGCCCTCTGCGTCAGCTGACCCTGCAACACAACTCCATTGGTCGAATCCCTGCGTATGTCTTTGGCCACCTGCGCCCCGGCCTAGAGTCCCTCCGTCTATCCCACAATGCACTAGGGGACGAAGGAGTGCAAGGAGTTTCTTTTGTGGGCATGTACCGATCGCTTGTTGAGCTCCTATTGGACAATAACCGTCTGGGGGCGGTGCCTCGCAGCGTGTGGCAGTTTAGGAACCTGCAGGTGCTGAGGCTCGACTACAACCAAATCAGGTCTGTGGCGGTGGGGTCGGTGTGTCACTCTCGTGTGGCGGTGCGTTCGGCCCTGGCCTCTCTCCACCTGGAGAACAACCTTATAGAGGAAGACATCCCCTCCACTACCTTCAGCTGTATTCAAGACCCTAGTAGTGTGGTCACACAGCCCCAGGAACACATACACGAGGTGTAGACCAGCTTCTCCATGTATAGATGTTCCACTGAACCATCATTAAACCTCCCTATTTCCCCACCTCCATTTCTTCACCAatcagctgttttgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgcaaaactgatagagacatacctcaagcgacttacagcagtaatcgcagcaaaaggtggcgctacaaagtattaacttaagggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttca

Function

NR:

description
extracellular matrix protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947572.1 False 2941 mRNA 0.51 10 66382003 66421062
XM_036947571.1 True 2955 mRNA 0.51 10 66382003 66421064

Neighbor

gene id symbol gene type direction distance location
bgnb bgn coding downstream 36360 66320422 ~ 66345643 (-)
b4galt3 b4galt3 coding downstream 73936 66303589 ~ 66308067 (-)
LOC110492566 LOC106566511 coding downstream 85564 66280956 ~ 66296439 (-)
ddx20 ddx20 coding downstream 105520 66269637 ~ 66276483 (-)
LOC110492562 LOC106568106 coding downstream 641227 65715711 ~ 65754610 (-)
tsr2 tsr2 coding upstream 12884 66433948 ~ 66436902 (-)
cdk16 cdk16 coding upstream 30028 66442214 ~ 66479142 (-)
abt1 abt1 coding upstream 80968 66502032 ~ 66503955 (-)
zgc:86609 LOC106566500 coding upstream 162039 66583103 ~ 66587055 (-)
LOC118939570 NA coding upstream 277574 66698638 ~ 66706256 (-)
G1402659 NA non-coding downstream 5163 66359441 ~ 66376840 (-)
G1402604 NA non-coding downstream 64287 66234253 ~ 66317716 (-)
G1402620 NA non-coding downstream 80486 66299646 ~ 66301517 (-)
G1402588 NA non-coding downstream 175763 66205628 ~ 66206240 (-)
G1402585 NA non-coding downstream 180500 66201159 ~ 66201503 (-)
G1402707 LOC106566505 non-coding upstream 69593 66484901 ~ 66494667 (-)
G1402728 NA non-coding upstream 103662 66524726 ~ 66525092 (-)
G1402731 LOC106566502 non-coding upstream 110292 66531356 ~ 66531965 (-)
G1402732 NA non-coding upstream 111584 66532648 ~ 66533823 (-)
G1401617 NA other downstream 745631 65635482 ~ 65636372 (-)
si:ch211-117c9.5 LOC106566567 other downstream 1933531 64445355 ~ 64485638 (-)
G1400578 NA other downstream 2071547 64309883 ~ 64310456 (-)
G1400565 LOC106575828 other downstream 2096010 64285628 ~ 64285993 (-)
G1402686 srpk3 other upstream 4487 66425551 ~ 66426322 (-)
G1403498 NA other upstream 1022357 67443421 ~ 67444179 (-)
LOC118939478 LOC106566484 other upstream 2370125 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 2782222 69203286 ~ 69207158 (-)

Expression


Co-expression Network