tsr2 (tsr2)


Basic Information

Item Value
gene id tsr2
gene name tsr2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66433948 ~ 66436902 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566973.2
GCAAATTCGAATCACTCACTGGTCACTCGTCATGTAATGCCTGATTATTTTCAAAATGGAAGCGCAGAAGACTGCACGTGAACTTTTCACTGAAGCAGTGAGAGCAGTCCTAGAAACTTGGCCTGTTTTACAGATCGCAGTTGATAATGGATTTGGAGGCGTGTACGGCCAACAGAAGGCAGATTGGATGGTGGATGTGGTCCAACAGTATTTTCATGACAACGAAAACCTGCAGCCAGATGAAGTGGAGGACTACATAGCAGACCTTATGAACAATGAGTTTGATACAGTGGTGGATGATGGCAGTTTACCTCAGGTGGCACAGAAGGTTAGCCAGATCTTTACACAGTGCCAACAAGGAAAGCTTGCAGAGGTCAAAGATCAGATAGTCAAACTTAACAAGAGTGCAGAACGAGCCAAGGTCACACCTCAACCAAACGCTGCTGAAGAGTGTAATAGCGATGAAACAGAGTTCATGGAGTGTGAAGCAGCAACGTCAACAAACCCCCCGCGTAGTTCGGCACCCAAACAGACAGATCAACCCCAGTCTCAAGAGGAAAACGATGGTTGGACCACAGTGGTGCGCAGGAAGTGACATTACTGTGGAAGTGCTGAGTGAATTGGGATTTTACTGCCTCCGAACACTGTCGCCGTTTTGTTTTATACGTGTCTCTCCAATGGTTCTGTCATATTGGGAGGATGGACATATGTTCTGATGAAAACCTGGACACGTAACCTATACCTCGAGTTCACATTTATGCAGGTGTCAAAAGAGGTCTTATCAGGGCATCTTCTGAGGAACTGTCACTGTTTACAGGAATTTCATTGTTTTTGGTACATGGAAATCCAGTTCAGTAGCAATTAAATAGCCATCACACATCACTCACCTACAATGCCGAGGCAGGCCCCCACCCCtctgaggggttgggttaaatgcggaagatatcagttgaacaactgactaggtatcccctttccaaTAGTATGTATTACTGAGTAAGGGATAGAAAGTGTTCCTTTGCACTGATCCATGTTCTATTTTCATATGAAATTAATAGAGGTCTACCTGCTACAACATGTCTATTTACAGTATAGTAGTCGGCAGTGTTAAATATAAAACTTAAACAGCCAACTTAATGGTGAATTTATTTAATGTACTTAACTCACCATCTCTTGGCCGCATGAGTGGCATATAGTACTCTAAAACTGGTTTAAAGATTTATTCTGAAGAATACAGGTTGTAAGATATCTGGTCTTTCTTCCAGTCATGTTTAAAGACATTTTATGTTCACAAAATAAGCATTCCACATACAGTTTGGCGACATGTATAAAACAAAGTGAAGGATATTTtttttgtatacttttttttgTACACCTGGCATATCAAGGCACTATTTTAACAAATGTGACTCAGCACAATGAGAAGTAGATCATCCATTTTAAAACAAACTACAGATATCATATTCATCCCAACCATTTATAGAACCTGTAATGCTGCTTTAATAAATACAAAGAATCTGTAGATTTAGGTTACTGCTACTTATGTGCTCAGAGTAATGGTAACGTCAGTTTATATTAACTTTAGATAAATAATCAACGTTTCATTTAGAAAAGATCTCCATCTAGGCTGAGAATAACCACACGGACTTAGTGGTACAGTATGGACTCAGTGGTATACAGTAAAGGTTAGACGCATGgtagttgtgttgtggtggtggacaGTAGTCTACAAGTTGAGCCAGGGGTGCTGCAAACACTGAGCGGCAGTGGCTCTCTTTTCTGGTGTGACGTCCAGCATGGTGAGGAGGAAGTCACTGAACTGGGCCGCCTGCTCCAGTGGCCACTCATACTTCTCCAACAGCACCTCAAACAGACCCCATGGCTTCAGGTTGGCTATGTGTCTCAGCTCACCTTCAAGAGGGAAAAGAATGCATTGTTCCAGTGAGCTAAACATTAAACCACAAAAATAGGGACAGTCTCTCAGATCATCATTTTGGGGGTTGCCGAGTGGCATAGCCctctaaaggcactgcatctcagtgctagaggcgtcaatacagaccaggctgtatcacaaccggatgtgattgggagtcccatagggtggcgcacaattgggtTCGGGTTTaacttcattgtaaataagaattgtttCTTTAAGTGCCTGTAACTTGCCGAGTTATATAATAAATCCTATTAGGCACCATACAGG

Function

symbol description
tsr2 Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within rRNA processing. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 14 with mandibulofacial dysostosis. Orthologous to human TSR2 (TSR2 ribosome maturation factor).

NR:

description
pre-rRNA-processing protein TSR2 homolog

GO: NA

KEGG:

id description
K14800 TSR2; pre-rRNA-processing protein TSR2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566973.2 True 2212 mRNA 0.42 5 66433948 66436902

Neighbor

gene id symbol gene type direction distance location
si:dkey-32e6.6 LOC106566508 coding downstream 12884 66382003 ~ 66421064 (-)
bgnb bgn coding downstream 88305 66320422 ~ 66345643 (-)
b4galt3 b4galt3 coding downstream 125881 66303589 ~ 66308067 (-)
LOC110492566 LOC106566511 coding downstream 137509 66280956 ~ 66296439 (-)
ddx20 ddx20 coding downstream 157465 66269637 ~ 66276483 (-)
cdk16 cdk16 coding upstream 14190 66442214 ~ 66479142 (-)
abt1 abt1 coding upstream 65130 66502032 ~ 66503955 (-)
zgc:86609 LOC106566500 coding upstream 146201 66583103 ~ 66587055 (-)
LOC118939570 NA coding upstream 261736 66698638 ~ 66706256 (-)
slc6a8 slc6a8 coding upstream 301424 66738326 ~ 66767036 (-)
G1402659 NA non-coding downstream 57108 66359441 ~ 66376840 (-)
G1402604 NA non-coding downstream 116232 66234253 ~ 66317716 (-)
G1402620 NA non-coding downstream 132431 66299646 ~ 66301517 (-)
G1402588 NA non-coding downstream 227708 66205628 ~ 66206240 (-)
G1402585 NA non-coding downstream 232445 66201159 ~ 66201503 (-)
G1402707 LOC106566505 non-coding upstream 53755 66484901 ~ 66494667 (-)
G1402728 NA non-coding upstream 87824 66524726 ~ 66525092 (-)
G1402731 LOC106566502 non-coding upstream 94454 66531356 ~ 66531965 (-)
G1402732 NA non-coding upstream 95746 66532648 ~ 66533823 (-)
G1402686 srpk3 other downstream 7626 66425551 ~ 66426322 (-)
LOC110492562 LOC106568106 other downstream 679338 65715711 ~ 65754610 (-)
G1401617 NA other downstream 797576 65635482 ~ 65636372 (-)
si:ch211-117c9.5 LOC106566567 other downstream 1985476 64445355 ~ 64485638 (-)
G1400578 NA other downstream 2123492 64309883 ~ 64310456 (-)
G1403498 NA other upstream 1006519 67443421 ~ 67444179 (-)
LOC118939478 LOC106566484 other upstream 2354287 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 2766384 69203286 ~ 69207158 (-)
G1405016 nsfl1c other upstream 2840925 69277827 ~ 69280359 (-)

Expression


Co-expression Network