abt1 (abt1)


Basic Information

Item Value
gene id abt1
gene name abt1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66502032 ~ 66503955 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165126.2
GCGCACGTGTAGTCCACATTAATTTGCGTTGTGTTCCTAGGTAGCTTCTACTTTGAAAAGCGTATTGTTATTTACTTATTAATGTATTGATTTTCGTATTGGAACGTCGACGCGAGGCTGCACGGCCATCTGATCTGTCTGGATACGTGAGGTGGAGAGGATGAACATCGAGGAGAATAAAGTGAATGAGGATATGGCTGATGAAGAATCTGGAGAAATGCCCAAGATTGAAGCAGATGAGGATGACGACAACACAGAGAATGACGATGAAGAACTAAATGATGAGGAACTTAAAGAAGAGGCTGAAGGTGATCTCAAAGAGAAAAAGGTGTCAGTAGGCAAGACGTGTCTGCCAGGAATAGTGTATTTAGGTCATATACCACCAAGACTGAGACCCAAGAATATGCGCAGCATGCTGAGTCTGTATGGGGAGATTGGAAGGATATTCCTACAGCCTGAAGACCGGTCTGTGAAGAGGAAGAAAAAGAAAGCTGGCACCAAGGCATGCAGTTTCACTGAGGGCTGGGTGGAGTTCAGGGACAAGAGAGTGGCCAAGAGAGTGGCAGCTAGCCTCCACAACACACCGATGGGCGCCCGGAAAAGGAGCCGCTTTGTCAGTGACCTCTGGAACATCAAGTACCTCCACAGGTTCCAGTGGTGTCACCTGAGTGAGCGACTGGCCTATGAGATGACTGTGCTCCAGCAGCGCCTCAGAACTGAGATCTCTCAGGCCAAACGAGAGACCAACTTCTACCTGGCCAATGTGGAGAAGAGCCAGAACATGGACAAactgaggaagaagagggagaggaagggcgAGAAGATAGAGGAGAAGACTTGGAACTTCACTCAGCGATGTACAGAGGATGAGATCCAGATGAGTCGCCTGCGTAAACAGACCATGTCCAAGAAGAACCTGCTGAAGGCCCAGGACAAGGCCAGGGACATACAACAGAAGTCCCAGTCCAACGTCTCTCTGCTGGCCAAGATCTTCAACGGCAGCAAAGCCAGGGACTGAACCTAGCCCGGCAGTTCTGGTCAAACACAGTATCCCAGGACTGGTCTCTTTTCAGTATCACAATTAGAGCAAACTTTTGCCCCTGACACTTGCTGGTGTTGTGAGCGACACTGAGAGGATGGGCTCTGTCCAGACACACAGACTCGAGGGAAAAATAGGGTTTTCTCCATCAGTGTAATTTGATTATAAATGTAGGAGAGACTTGGACAGATCCTCTTTTTGGTTTAATGTATTGTAAACTATTAGCTATGATGCAGTAACAATATGTTCAGCGCCATGGAAAACACCTGCTCATACTGTATGTGCTATTTGGAAATATTAAATGGAAATACCTCT

Function

symbol description
abt1 Predicted to enable RNA binding activity. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in nucleus. Predicted to be active in nucleolus. Orthologous to human ABT1 (activator of basal transcription 1).

NR:

description
activator of basal transcription 1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14785 ESF2, ABT1; ESF2/ABP1 family protein

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165126.2 True 1354 mRNA 0.47 4 66502032 66503955

Neighbor

gene id symbol gene type direction distance location
cdk16 cdk16 coding downstream 22890 66442214 ~ 66479142 (-)
tsr2 tsr2 coding downstream 65130 66433948 ~ 66436902 (-)
si:dkey-32e6.6 LOC106566508 coding downstream 80968 66382003 ~ 66421064 (-)
bgnb bgn coding downstream 156389 66320422 ~ 66345643 (-)
b4galt3 b4galt3 coding downstream 193965 66303589 ~ 66308067 (-)
zgc:86609 LOC106566500 coding upstream 79148 66583103 ~ 66587055 (-)
LOC118939570 NA coding upstream 194683 66698638 ~ 66706256 (-)
slc6a8 slc6a8 coding upstream 234371 66738326 ~ 66767036 (-)
LOC110492586 LOC106566493 coding upstream 318379 66822334 ~ 67012161 (-)
LOC110492588 LOC106566492 coding upstream 517980 67021935 ~ 67033045 (-)
G1402707 LOC106566505 non-coding downstream 7365 66484901 ~ 66494667 (-)
G1402659 NA non-coding downstream 125192 66359441 ~ 66376840 (-)
G1402604 NA non-coding downstream 184316 66234253 ~ 66317716 (-)
G1402620 NA non-coding downstream 200515 66299646 ~ 66301517 (-)
G1402728 NA non-coding upstream 20771 66524726 ~ 66525092 (-)
G1402731 LOC106566502 non-coding upstream 27401 66531356 ~ 66531965 (-)
G1402732 NA non-coding upstream 28693 66532648 ~ 66533823 (-)
G1402739 NA non-coding upstream 43270 66547225 ~ 66547438 (-)
G1402741 NA non-coding upstream 45495 66549450 ~ 66549712 (-)
G1402686 srpk3 other downstream 75710 66425551 ~ 66426322 (-)
LOC110492562 LOC106568106 other downstream 747422 65715711 ~ 65754610 (-)
G1401617 NA other downstream 865660 65635482 ~ 65636372 (-)
si:ch211-117c9.5 LOC106566567 other downstream 2053560 64445355 ~ 64485638 (-)
G1403498 NA other upstream 939466 67443421 ~ 67444179 (-)
LOC118939478 LOC106566484 other upstream 2287234 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 2699331 69203286 ~ 69207158 (-)
G1405016 nsfl1c other upstream 2773872 69277827 ~ 69280359 (-)
G1405172 NA other upstream 3013800 69517755 ~ 69518113 (-)

Expression


Co-expression Network