zgc:86609 (LOC106566500)


Basic Information

Item Value
gene id zgc:86609
gene name LOC106566500
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66583103 ~ 66587055 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566982.2
GGGGTCAAAGCGTTATGGAGTTCAAAGGTCTGAAGAATGAGCGCTCGCTTCTCTGATGGTCGGAGAATTGGACTTAAAAAGGGTATAAACGCGTTATTCGAGCTTATCATTTAATTAATATATTAACGTATGTGAAAAATACGGTTGTTGTTTGGATGGCTACACTCACTCCTTTCAATAATCTGTGGTTGGAGACGGTCTTGTCTTCTTCAATTATTTAAGGAAACCTATTTGGGTAGCATGCTACATGCGAACTAGCAGCTAGCTAAGTTAAGTTACAGGAAGCCCCCTAGGGCCGTCGTGTCAACTAAAGATCCGAGCCAAAGATAAATAGTCGTGTAGGTACGCTAACCAGTTAAACAACATGGCTGAGTTGCTTCTGGATTCAAGTATCCGAATATGGGTGGTTTTACCAATTGTATTGATTACATTTTGCGTTGGAATTATCCGTCACTATGTCACCCAACTCCTGCAAAGTGACAAAAAAGTTGATCTGGAACAGGTGTCAGACAGCCAAGTCCTTCTGCGTAGCCGCATCTTAAGAGAAAATGGAAAATATATCCCTAAACAAtcATTTAACATGCGGAAGCAATATTTCAATGATGCGGAGACTGGGTTCTTCAAGAAGGTCAAGCGAAAGGTGACTCCCAAAAACCCAATGACTGATACCAGCATGCTGACTGACATGATGAAGGGAAATCTGACCAATGTACTTCCCATGATTGTGATTGGAGGATGGATCAACTGGGCATTCTCTGGCTTTGTCATCACTAAGGTTCCCTTTCCTCTGACATTGAGATTCAAACCAATGCTGCAGCGTGGAATTGAACTGTTGTCTCTTGATGCATCCTGGGTGAGCTCAGCCTCTTGGTATTTCCTTAATGTTTTTGGACTGAGGAGTATGTACAGCCTCATTCTTGGACAGGACAATGCTGCGGATCAGTCGAGGATCATGCAGGATCAGATGACTGGCGCTGCCATGGCCATGCCGCCTGATCCTAACAAGGCCTTTAAGAGTGAATGGGAGGCGTTGGAGATTGTGGAGCACAAATGGGCCCTGGAGAACGTTGAGGAGGAGCTGATGTCTCGAGATCTGAACTTTTGTGGAATCTTCAGTCAAGAGATAAAAGCCACAATGTTCTAATGAGGTTATTGACTCAACTGCTGCTGTAGAGGCAGCCAGTTTCTGTGATACAGTGTATCATCAGGGTTCTCTGaggcagttgtaaaaaaaaatatttaaaaaatgtcttAAATATGATTGTGatacctaaacagtatatttttgGCTCAAGgcaataaaaaaacaacaatagaAAGGCAAACATATTTAACCTCTGACATTAATTTAATGACAACTAATGCCTATTTGTTTCGTTGTGTGAAAATAGTGTAAGTTGAATGTAAATGATGCATGTTCTCAGCTTAGTTTTATTATTGCCTTGCAATTTTTCACTATTACGCCTTACTGTTAACTGATTTCATTGTGCATTCAAATATCAGCGCATCACACAGATGTATTATTTGTAGAAAATAGTTTGGTTGTGTTGATTAATTTCAGACATGCTTCTCTGCACATTTCTGAAATGGCTtgttctctttgtgtgtgtgtgaaccaagGCCTCATCTCTGATATTGTCTGCATTGCTTGTGTTTGTTTAAGTTGTAAGGTTCTTAGgagtaaaaaaaaagttttttttcttcttctattcTGTCTCTTTCAGAGGTGAACTGGTGTTACCTGATTAGCTCCCAATACCATTTAAGCATTTTTAAACATACAAAATCTTGCCAAAACATCCGCTTTGGCTGTACTGTATAATTGAATGCGATGTAGCCTGTCCATTGGAGCTGATGTTTTTTGTATCTGTGCCAGAAGAGGTGGTGATATGGGGAGGTGAGGATGTATTGGAAATATACCATCTGCTTGGCTGTGGAGATTTAGAAATAAATTATCTGCAGATCTGAAG
>XM_021566981.2
TGTGGACAACGACTCTCCCATTGCTAGGGTGGAGAGACATGTAGTATCTTGTCAGTTTATCCATCATTTTTTTTATTCAAtggggacgtcccaaggatccctaATAGCACGCACCGTTTTTCGACAGCTGAAACTACATTAATTAGATCATTAATTGGTTGAACTAAAatgtattattgattatttaaatGTGGATGCTTTCCATCTTCAGAAAATACATAATATCATAATGCATAATGACCGTATTTGATCATACGTCAGGGGTCAAAGCGTTATGGAGTTCAAAGGTCTGAAGAATGAGCGCTCGCTTCTCTGATGGTCGGAGAATTGGACTTAAAAAGGAATAGTCGTGTAGGTACGCTAACCAGTTAAACAACATGGCTGAGTTGCTTCTGGATTCAAGTATCCGAATATGGGTGGTTTTACCAATTGTATTGATTACATTTTGCGTTGGAATTATCCGTCACTATGTCACCCAACTCCTGCAAAGTGACAAAAAAGTTGATCTGGAACAGGTGTCAGACAGCCAAGTCCTTCTGCGTAGCCGCATCTTAAGAGAAAATGGAAAATATATCCCTAAACAAtcATTTAACATGCGGAAGCAATATTTCAATGATGCGGAGACTGGGTTCTTCAAGAAGGTCAAGCGAAAGGTGACTCCCAAAAACCCAATGACTGATACCAGCATGCTGACTGACATGATGAAGGGAAATCTGACCAATGTACTTCCCATGATTGTGATTGGAGGATGGATCAACTGGGCATTCTCTGGCTTTGTCATCACTAAGGTTCCCTTTCCTCTGACATTGAGATTCAAACCAATGCTGCAGCGTGGAATTGAACTGTTGTCTCTTGATGCATCCTGGGTGAGCTCAGCCTCTTGGTATTTCCTTAATGTTTTTGGACTGAGGAGTATGTACAGCCTCATTCTTGGACAGGACAATGCTGCGGATCAGTCGAGGATCATGCAGGATCAGATGACTGGCGCTGCCATGGCCATGCCGCCTGATCCTAACAAGGCCTTTAAGAGTGAATGGGAGGCGTTGGAGATTGTGGAGCACAAATGGGCCCTGGAGAACGTTGAGGAGGAGCTGATGTCTCGAGATCTGAACTTTTGTGGAATCTTCAGTCAAGAGATAAAAGCCACAATGTTCTAATGAGGTTATTGACTCAACTGCTGCTGTAGAGGCAGCCAGTTTCTGTGATACAGTGTATCATCAGGGTTCTCTGaggcagttgtaaaaaaaaatatttaaaaaatgtcttAAATATGATTGTGatacctaaacagtatatttttgGCTCAAGgcaataaaaaaacaacaatagaAAGGCAAACATATTTAACCTCTGACATTAATTTAATGACAACTAATGCCTATTTGTTTCGTTGTGTGAAAATAGTGTAAGTTGAATGTAAATGATGCATGTTCTCAGCTTAGTTTTATTATTGCCTTGCAATTTTTCACTATTACGCCTTACTGTTAACTGATTTCATTGTGCATTCAAATATCAGCGCATCACACAGATGTATTATTTGTAGAAAATAGTTTGGTTGTGTTGATTAATTTCAGACATGCTTCTCTGCACATTTCTGAAATGGCTtgttctctttgtgtgtgtgtgaaccaagGCCTCATCTCTGATATTGTCTGCATTGCTTGTGTTTGTTTAAGTTGTAAGGTTCTTAGgagtaaaaaaaaagttttttttcttcttctattcTGTCTCTTTCAGAGGTGAACTGGTGTTACCTGATTAGCTCCCAATACCATTTAAGCATTTTTAAACATACAAAATCTTGCCAAAACATCCGCTTTGGCTGTACTGTATAATTGAATGCGATGTAGCCTGTCCATTGGAGCTGATGTTTTTTGTATCTGTGCCAGAAGAGGTGGTGATATGGGGAGGTGAGGATGTATTGGAAATATACCATCTGCTTGGCTGTGGAGATTTAGAAATAAATTATCTGCAGATCTGAAG

Function

NR:

description
PREDICTED: ER membrane protein complex subunit 3-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K23564 EMC3, TMEM111; ER membrane protein complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566982.2 False 1970 mRNA 0.40 9 66583103 66586795
XM_021566981.2 True 1983 mRNA 0.40 9 66583103 66587055

Neighbor

gene id symbol gene type direction distance location
abt1 abt1 coding downstream 79148 66502032 ~ 66503955 (-)
cdk16 cdk16 coding downstream 103961 66442214 ~ 66479142 (-)
tsr2 tsr2 coding downstream 146201 66433948 ~ 66436902 (-)
si:dkey-32e6.6 LOC106566508 coding downstream 162039 66382003 ~ 66421064 (-)
bgnb bgn coding downstream 237460 66320422 ~ 66345643 (-)
LOC118939570 NA coding upstream 111583 66698638 ~ 66706256 (-)
slc6a8 slc6a8 coding upstream 151271 66738326 ~ 66767036 (-)
LOC110492586 LOC106566493 coding upstream 235279 66822334 ~ 67012161 (-)
LOC110492588 LOC106566492 coding upstream 434880 67021935 ~ 67033045 (-)
LOC110492592 LOC106566478 coding upstream 884889 67471944 ~ 67492651 (-)
G1402746 LOC106566502 non-coding downstream 26373 66556131 ~ 66556730 (-)
G1402743 NA non-coding downstream 31953 66550923 ~ 66551150 (-)
G1402742 NA non-coding downstream 32487 66550282 ~ 66550616 (-)
G1402741 NA non-coding downstream 33391 66549450 ~ 66549712 (-)
G1402739 NA non-coding downstream 35665 66547225 ~ 66547438 (-)
G1402782 NA non-coding upstream 2242 66589297 ~ 66589631 (-)
G1402783 NA non-coding upstream 4090 66591145 ~ 66591348 (-)
G1402787 NA non-coding upstream 14102 66601157 ~ 66601881 (-)
G1402790 NA non-coding upstream 17151 66604206 ~ 66605461 (-)
G1402792 NA non-coding upstream 20632 66607687 ~ 66607942 (-)
G1402707 LOC106566505 other downstream 88436 66484901 ~ 66494667 (-)
G1402686 srpk3 other downstream 156781 66425551 ~ 66426322 (-)
LOC110492562 LOC106568106 other downstream 828493 65715711 ~ 65754610 (-)
G1401617 NA other downstream 946731 65635482 ~ 65636372 (-)
si:ch211-117c9.5 LOC106566567 other downstream 2134631 64445355 ~ 64485638 (-)
G1403498 NA other upstream 856366 67443421 ~ 67444179 (-)
LOC118939478 LOC106566484 other upstream 2204134 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 2616231 69203286 ~ 69207158 (-)
G1405016 nsfl1c other upstream 2690772 69277827 ~ 69280359 (-)
G1405172 NA other upstream 2930700 69517755 ~ 69518113 (-)

Expression


Co-expression Network