uxt (uxt)


Basic Information

Item Value
gene id uxt
gene name uxt
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66597637 ~ 66599559 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566986.2
GACCCCGGAAGGACTTAGTTATTCATGCCTGCTAGCTTGACAGTGGTTACATAAGATAGCTGCAGTTTTTTTGTGCTGTGGAGCTAGGATTCAGAATCATTGCCTCGTTTTCGAACACGAATGACCATCAACAACTGATTGATTTCACGACTCATAATGGCTCATGCTGGAAAACCCAGCATTGACAAAAAGGTCTTGCAGTATGAAACGTTTATTAGCGATGTGTTGAAACGAGATTTGGAGAGGGTATTGGAGCAAAGAGATGGAGTGTATGAAAAAATTGCACAATATCTACAACTGAAAAATACCATTGAAAGCCTAAAGGAATCTGAGACGAAGGGACTCAAAACAGAGATAGATCTTGGCTGTAATTTCTACGTCCAAGCACATGTGGAGGACTCGTCAAAAATCTTTGTTGCTGTTGGATATGGCTTTTTTGTCGAGTTAACGCACTCGGAAGCTCTGAAGTTCATTGAGAAAAAGACAAATCAGCTTACAGTACATACCGAAGTGTTGACCAAAGATGCAGCTAAAATCAAAGCCAACATTCgcatggtgttggagGGATTAAGAGAGCTTCAAAGTCTTACGGATGTTCCGGAGAAAAGGATGAGAGACGCTCTTTAGCTGCAGTAGTGCTTCTGTTCAGACCTTTAGATATCAGTTTTCTATCACATTCATAATAGTGATAAGACTGTATTATTTCCATTGCTCTTTGGTTTATCTGAAGTTATATAAATGGTGTGTAAAACAAACCTTTGATACAAACTTGGCATCTGAACAGGTTGTACTGTTTAGAAGTTGCTCTAAAACTGTAATTCTGCATAAAATAAAATGGGGGAAAGAAGTTTTAAAATCTGTTAAACA
>XM_021566985.2
TTCATGCCTGCTAGCTTGACAGTGGTTACATAAGATAGCTGCAGTTTTTTTGTGCTGTGGAGCTAGGTAAGCCAAAGCTACAACAAAATTGTGGACTATGTTGTTATTAAACATAgatagtcagctagctaacaataACTCTGCAGTCGCCTTATTAACTTCATTATATGGGTAATATCTTTGGAACATTTTGTTTTCAGGATTCAGAATCATTGCCTCGTTTTCGAACACGAATGACCATCAACAACTGATTGATTTCACGACTCATAATGGCTCATGCTGGAAAACCCAGCATTGACAAAAAGGTCTTGCAGTATGAAACGTTTATTAGCGATGTGTTGAAACGAGATTTGGAGAGGGTATTGGAGCAAAGAGATGGAGTGTATGAAAAAATTGCACAATATCTACAACTGAAAAATACCATTGAAAGCCTAAAGGAATCTGAGACGAAGGGACTCAAAACAGAGATAGATCTTGGCTGTAATTTCTACGTCCAAGCACATGTGGAGGACTCGTCAAAAATCTTTGTTGCTGTTGGATATGGCTTTTTTGTCGAGTTAACGCACTCGGAAGCTCTGAAGTTCATTGAGAAAAAGACAAATCAGCTTACAGTACATACCGAAGTGTTGACCAAAGATGCAGCTAAAATCAAAGCCAACATTCgcatggtgttggagGGATTAAGAGAGCTTCAAAGTCTTACGGATGTTCCGGAGAAAAGGATGAGAGACGCTCTTTAGCTGCAGTAGTGCTTCTGTTCAGACCTTTAGATATCAGTTTTCTATCACATTCATAATAGTGATAAGACTGTATTATTTCCATTGCTCTTTGGTTTATCTGAAGTTATATAAATGGTGTGTAAAACAAACCTTTGATACAAACTTGGCATCTGAACAGGTTGTACTGTTTAGAAGTTGCTCTAAAACTGTAATTCTGCATAAAATAAAATGGGGGAAAGAAGTTTTAAAATCTGTTAAACA

Function

symbol description
uxt Predicted to enable transcription corepressor activity. Acts upstream of or within angiogenesis and negative regulation of Notch signaling pathway. Located in chromatin. Is expressed in head and trunk. Orthologous to human UXT (ubiquitously expressed prefoldin like chaperone).

NR:

description
PREDICTED: protein UXT isoform X1

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0016272 prefoldin complex cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566986.2 False 867 mRNA 0.39 7 66597637 66599559
XM_021566985.2 True 980 mRNA 0.38 6 66597658 66599559

Neighbor

gene id symbol gene type direction distance location
usp11 usp11 coding upstream 14693 66569476 ~ 66582944 (+)
grm6a LOC106566502 coding upstream 31873 66524736 ~ 66565764 (+)
comta LOC106566505 coding upstream 102952 66477277 ~ 66494685 (+)
srpk3 srpk3 coding upstream 162726 66423889 ~ 66434911 (+)
LOC110492564 LOC102303593 coding upstream 332538 65996027 ~ 66267216 (+)
elk1 LOC106566498 coding downstream 403 66599962 ~ 66621991 (+)
si:ch211-180f4.1 LOC106566497 coding downstream 40674 66640233 ~ 66653854 (+)
otud5a otud5 coding downstream 59450 66659009 ~ 66683358 (+)
pim2 pim1 coding downstream 84547 66684106 ~ 66688076 (+)
slc35a2 slc35a2 coding downstream 89503 66689062 ~ 66701670 (+)
G1402092 NA non-coding upstream 1432 66595567 ~ 66596205 (+)
G1402067 NA non-coding upstream 53253 66544049 ~ 66544384 (+)
G1402063 NA non-coding upstream 58066 66539164 ~ 66539571 (+)
G1402054 NA non-coding upstream 79938 66514792 ~ 66517699 (+)
G1402026 NA non-coding upstream 142715 66448747 ~ 66454922 (+)
G1402098 NA non-coding downstream 28005 66627564 ~ 66627883 (+)
G1402099 NA non-coding downstream 29576 66629135 ~ 66629342 (+)
G1402113 NA non-coding downstream 56164 66655723 ~ 66656284 (+)
G1402126 NA non-coding downstream 72681 66672240 ~ 66673080 (+)
G1402066 NA other upstream 53952 66543311 ~ 66543685 (+)
G1401782 NA other upstream 573392 66019001 ~ 66024245 (+)
G1401354 NA other upstream 700574 65895891 ~ 65897063 (+)
G1401074 NA other upstream 1338793 65258515 ~ 65258844 (+)
G1401041 NA other upstream 1407362 65189990 ~ 65190275 (+)
G1402256 NA other downstream 314806 66914365 ~ 66914716 (+)
LOC110492593 LOC105017353 other downstream 872385 67459278 ~ 67476876 (+)
G1403412 LOC106566473 other downstream 1053509 67653068 ~ 67653447 (+)
G1403463 NA other downstream 1139403 67738962 ~ 67739702 (+)
G1403655 LOC106566486 other downstream 1173997 67773293 ~ 67777491 (+)

Expression


Co-expression Network