si:ch211-180f4.1 (LOC106566497)


Basic Information

Item Value
gene id si:ch211-180f4.1
gene name LOC106566497
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66640233 ~ 66653854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566987.2
GTGCTTCAAATACAGTGAGGAACGTCGGGCCAGGTTATAATGCACTGATGTTATGATTTTACAGAAGTCGGTTATTCTATTGTAATGCGAGCTTCGAGATAGCGAGAAAGGTTCAAATTCAACATCCGCAAGGTTATTACGACCGAAGATGTCGATATTGGTCATTTAATTTTCAAGGTGACAGCGAAATTCTTGTAACCAAGGAGTGGAAGACATCGTTCAATTGGAAGCCGCCTGCATTTGGTACAGAGGATTAAAGCTCCATCGGCATAGCAGAAGAAGTCACAGTTTAACCTGGCCCAGGGTTAACAGGGTTACCTCATTCTACTGCAACATGGGAGGATCTGGGATCTGTGCTCGGCTGATGATTGTCTTTCTAATGGTGATCTCATGCCAAAGTTCAGAAGCTAGTTCTCCCTGCCCAGCGCAGTGTGTATGTGAAACACGTCCATGGTACACACCTCAATCGGTATACCATCAGGCCAAGACGGTGGACTGCAATGAGCTCCATCTTAGTGGGGTCCCGTGGAATATTTCAGGTGACACTCAGGTGCTTCTCCTCCAGAGTAACAACATCTCCTCTGTGTCTGTGGAGCTCCAGAGTCTAGTCAACCTCACAGAGCTAGACCTCTCCCAAAACCACTTCACACAGATCCAAGACATTGGACTGCACAACCTGACCCAGCTTGTCACTCTCTACCTTGAGGAAAACCAAGTAAAAGAACTGCAAGATTTCTGTCTGAAGGATCTTGACAGTTTGGAAGAGCTTTACATCAACCATAACCAAATCTCCTCCATTGGGCCTAAAGCCTTCTCTGGGCTCAGAAATCTCCTGAGGCTCCATCTCAACTCCAACAAGCTGGTGGCCATAGACAGCCACTGGTTTGAGTCTCTCCCTAACCTTGAGATTCTTATGATAGGGGAGAACCCCATCCTGGGGTTACAGGATATGAACTTCCACCCCTTGTCAAAGCTGCACAGTCTGGTGCTGGCTGGCATGGGCCTCAGGGAGGTCCCGTCGGGAGCTTTCCAGGGGTTGGAATACCTGGAGAGTCTGTCCTTCTTTGACAACAAGCTGACAGCAGTCCCCAAAGATGCCCTCCGGGTCCTACCAAATCTCAAGTTCTTAGACCTTAACAAGAATCCCATTGGCCGTGTTCAGGAGGGAGACTTCCATGATTTCCCCCATCTGGAGGAGCTGAGTCTGAATAACATGGAGGGCCTGGTTGCCATTGAGAGGGGGGCGTTCTCCAACCTCCCAGAGATGGCAAAACTGGAAATTTATAACAACCCCCATTTAGCTTATATTGATCGTGCTGCTTTCATTGACATGGGCGGCCTGCGCACTCTGTTAGTCCACAACAATGACATCAGCCTCTTGTCACACGAGGTTTTGTCCTCTTTCCCTAGCCTGGATGAAGTGAGTCTCCACAGTAACCCTCTCAGGTGTGACTGCCTCTCTAACTGGGGCCCAGTCCTGGGGAACCAGTCCACCCTCAAGTTGCTGGAGTCCCAAATCACCCTCTGTGCCTCCCCTCCCCATTTGGTTGGCCACGCCCTCCAGGAAGTGGTCACCACCAGCTGGAATGTTGTCAGCAACACCTGCCTCCCTCACATCTCCCTGCACACATTCCCCCCACTGCTCAATGTCACTGCTGGACAACCCCTGACTCTGGACTGTTGGGCTGTTGCTGACCCTGCACCTCAGTTCTACTGGGTGACGCCAACAGGAGACAAGGTGACCTCAGAGGCTGTCTCTGCAGTCATGGTGGACGGCAGGAGCACAAAGAAACACAGACTGCAGGAACAGGGGGCTCTGGAGATCCTCCAGGTTGAGCCAGCTGATTCTGGTCTGTACACGTGCGTGGCGTGGAACACAGAGGGGGCGGACACGCGTAGTGTGTCAGTGTACGTGGAGAAAGGAGACTGGCACGGTGGCAGGCTGAATGTCGGGGGGCACACAGTAAACACCATAATGGCCCTGGTGGTCCTGGCTAAGATCATCCACTCCCAGTCAGTGGTCCTGGAGTGGAAACTCTACCCTCCTCACTTCCACAGCCATGAGGCATCTCAGCCCAAGTGGTCCAGCGCCACCATGAAGATTGACAACCCTCAGATCAGCTATACAGCCAAGGTTCCGGTTGATGTGCAAGAATACAACCTGACTCACCTGTTGCCCTCGACAGAGTACAGAGTGTGTCTGACCATGTCAGCTACAGAACAGCAGACGCAACACTCCTGCATCAACGTCACCACCAAGGAGGCCAGTTTTGCTGTGGAGATGGTGGCCCAGCCCACCAATGTGGCCCTTGCAGCTGTCATGGGCTCCATGTTTGCCATCTGCATCATGGCCCTGCTTGTATTCTACATGGGCCGGCGTATGAAGCAGAAATCCTGCCATCACTCCCTGAAGAAATACGTGCAGCATGCCACCTCCATCCCCCTGAATGAGCTCTACCCTCCCCTGATCAACCTGTGGGAGAACGAGActgagaaggagaaagagggtcCAGTGGATCCCCAGAACTCTCAGATTGACACCTCAAAGACATACATGTGGTAATAAAGGTCAAAGTGCGTAGATGTAAAAGAGACATTTAACGACgtttatgtactgtactgtatgtaatcttAGTTACTGCTCAATCTTGAGATTTAAGAGTAAGATGTCATTGTGAAAGATAAGGTATTTTTAGACTGCAGATCTCTAGCTCAAGCACACTTAGTTGTCCCGTTGAATAAGGATCCTATTGTAATGCAGTTATGTTACATAAGGAAATATGCTGAGTGGGCCAGGTTTGAAGTATCCATGGCCAAACACACCTCCACAGAAGTACACTGTAACATCAAGCATGTAAgatattttattgtttatttaattcACTTTCTAGATTATATTTAACTAAATATGAAACGAAACCATAATACATTTCTGCCAGAGCACTTAGGTCAAGACCTGTTCACTGCTGCGTACTAATTCCAAATCACTGTTTAGGATTTTTTGCATGTCTACCTGCATGTTTTTCCTGTGCTCTGAGTATTTAGTCAAATaccccttctctcctttccctttGAAATATACAGGTGTAAAGCTgacaacaaaatgtttattctacttGGGGGTCGTATCCTGTTGTTCTTTCTTCTTTAGATGATTACTCCTAACACAACGGACCCTGTTTCATAGCTTTAAAGGTGGACTCGGCGATATGACGTAGATggagaaagtaaacagcatagtgggtcaatttccgcaacaactaagagcgttgaagcgcGAGGCTCAACTTCTCCGCTTATTTTGGTGCCATGGCTACCACGCTGTGAACCCCGTGCACATGCGCatatactgtgtgtgactgtgtgagagcgaaGTCTTGCTCATATCTGCGGTGCAGCTTGTGGCAACGTAATTTCACGGAGTCTACCTTTAACAGTTCATGATCATACAGGAAATAAATGCCATTCTTGTCTGGCATTGCATTTGTTGTCCATTTGTTACTGTTAGCCTGcacatgaagaaaaaaaacagcatttgaatgtatgtttatttatttgtttgctAACTTGtttcatatatatttattttctcacATTTTATAATCGAAAAATGTGCATTATAGTTAACCTATGCAGGATAAATGAACACTACCCTCATGTTCTTTGACTTGTTCATTACCAGACCGAGATCATGATGAAGTCATGCAGAGTTGAACCTTTATTAAGTTTCTCTGCATGGACAGCTAAGGGGTATTAACAACATGCATTTTCCTTCACACACAATGCAACATTTAGTGCTATCTACTGTCTATCATGGTGGTTAATTACCACATACACGTGATTTATTTATGTTCTATTAAAAATAGATTTCTAGAATATAGCAATTTAAGGTTGCACACAATGGCCAGTTACTGCATGAGTTTGCACTATATTTTGTGGACTGTTTTTGACTGTTTTTTAAACCATGCCATACAGTACAAGTGAACCTATTTAAGATGGAATATTTACTCACAATACAATGCACTTAGTTGTTGGACTATGCTCATCCAAATGTCTCCCCTGTACCAAAATATTTCAACCAAGATTCGACAGCTTGAGCATATCTGGAAAATGTCTCCAGGATATACTGCTTTTTAACTCATAGATGTAACACAATATTTAGACACATTACATGGTTTTGCATTAGATGTAGGAAACTGcttattttttcatttaattTTATAACCTGATGAAACATCCAAACATTTTATTTATGTGCTTATTTGTTtatatattgattgattgattatgaaTATGACACATATTAATCAAAAAtcagttttttatatatatatatatatatatatatattgagctATTCAAAAACATTAAGCCAAGGAATAACATTTCAGACACAATACATTTATTGTGTGTATAGTTCCATAACTAAGAGGCTGAAAATATCTTTTGATCTATCAAAATGCTGTATGTAGCAAAAGGCTGACTCTCAAAATGAAATGTTATTGACTAAAGCATGCCCTCTAGTGGCATTAGGTCCTTAATCAAAGTACAGTGTAACGTTTCAAATGCTGTAGTCTAGAATTTGATTAAACTTGACAGTGAATTGCAGGGTATTTTGTAATATAAAGCAATCTTGTTATATTTTAATTAAACCATTAATATTCCTCAACACTTTAGACGTATCGGTCTGTGCTTCTGTAGTTAATGGGAGATGACTGTGAAGAAATGTATTTCTTGACATGAATAAAATCATTATCCCATTTATTTGAA

Function

NR:

description
leucine-rich repeat neuronal protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566987.2 True 4770 mRNA 0.44 2 66640233 66653854

Neighbor

gene id symbol gene type direction distance location
elk1 LOC106566498 coding upstream 18242 66599962 ~ 66621991 (+)
uxt uxt coding upstream 40674 66597637 ~ 66599559 (+)
usp11 usp11 coding upstream 57289 66569476 ~ 66582944 (+)
grm6a LOC106566502 coding upstream 74469 66524736 ~ 66565764 (+)
comta LOC106566505 coding upstream 145548 66477277 ~ 66494685 (+)
otud5a otud5 coding downstream 5155 66659009 ~ 66683358 (+)
pim2 pim1 coding downstream 30252 66684106 ~ 66688076 (+)
slc35a2 slc35a2 coding downstream 35208 66689062 ~ 66701670 (+)
bcap31 bcap31 coding downstream 49199 66703053 ~ 66726416 (+)
LOC110492587 gripap1 coding downstream 380545 67034399 ~ 67128826 (+)
G1402099 NA non-coding upstream 10891 66629135 ~ 66629342 (+)
G1402098 NA non-coding upstream 12350 66627564 ~ 66627883 (+)
G1402092 NA non-coding upstream 44028 66595567 ~ 66596205 (+)
G1402067 NA non-coding upstream 95849 66544049 ~ 66544384 (+)
G1402113 NA non-coding downstream 1869 66655723 ~ 66656284 (+)
G1402126 NA non-coding downstream 18386 66672240 ~ 66673080 (+)
G1402074 NA non-coding downstream 72906 66726760 ~ 66727658 (+)
G1402149 LOC105416325 non-coding downstream 77825 66731679 ~ 66732031 (+)
G1402156 NA non-coding downstream 97207 66751061 ~ 66752076 (+)
G1402066 NA other upstream 96548 66543311 ~ 66543685 (+)
G1401782 NA other upstream 615988 66019001 ~ 66024245 (+)
G1401354 NA other upstream 743170 65895891 ~ 65897063 (+)
G1401074 NA other upstream 1381389 65258515 ~ 65258844 (+)
G1401041 NA other upstream 1449958 65189990 ~ 65190275 (+)
G1402256 NA other downstream 260511 66914365 ~ 66914716 (+)
LOC110492593 LOC105017353 other downstream 818090 67459278 ~ 67476876 (+)
G1403412 LOC106566473 other downstream 999214 67653068 ~ 67653447 (+)
G1403463 NA other downstream 1085108 67738962 ~ 67739702 (+)
G1403655 LOC106566486 other downstream 1119702 67773293 ~ 67777491 (+)

Expression


Co-expression Network