otud5a (otud5)


Basic Information

Item Value
gene id otud5a
gene name otud5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66659009 ~ 66683358 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566988.2
TCCTGTGTCGTCAGATCTGTGTTGATGTTTTGTGGGGAATGGAGAGCTTGGAGGACGGGAAGAGGGAGACGGTTTGTTATTGTTCaactagctagctatccccagaAAACAAAGCCAATAACAGATGATATCGATATATTTTGTAACCTAAGTGATTAAGGTCGAATATTGCACAAAAACTGACGGCCTTAACGGCAAAGTAGGCCTACTAGCTACATTCTGGAAAGAAGGAATCGTCACCCCGTTGACCCCCTCCCTAGCAGACAACCATGACGATTCTTCCGAAGAAGAAGCCGAACTCGAGTGTCGGTGTTTCGGACCACCCGGACGAGACTGACAGAAGGAGTGGCTCTGACCCACATCAACATCCACACGGAGGTCGTACAGGTGCAAGGCCGAGGGCCTCGCCGCCACCATGGTCCTATCAAGCCGCTCCACCTTCGACAAGGGAGGATAGACGGAACGAAGCTAGCTCTCGGCCGCAGCAGGCCTCTCCCCCTCCCGTGGTTTCAGGGTCTCCTGTTGGACCTGGGGATGGTAATGGGACTGGAGGAATACCATGCGTTGCTGGGACACGCGGAGAACTGTCAGGCAGCGTTGGTTGTGGTGGGGGAATTGGAAGTTGTTGTTCGGGGCCTGGTCTGAGTAAAAGGCGACGACAAGCAACCTGCTCTGGGGTGGCCGGTGGTGGAACACCCGGCGTAGCTGGAGGTGGCGGTGGAGGTCCTAGTGCTGATTCGGAGGAAGGTGCGGGTTACAACAGTGAAGATGAATACGAGAACGCATCGAGACTGCAGTCTGAGGACCCAGCGACAGTGGAGCAGCAGGAGCACTGGTTTGAGAAAGCGCTTGGGGAAAAGAAAGGCTTCGTCATTAAAAAAATGAAAGAGGACGGAGCATGTCTCTTCAGAGCTGTCGCTGATCAAGTATATGGAGACCAAGATATGCATGAAGTTGTCCGTAAACACTGCATGGACTACTTGACGAAAAATGCAGACTACTTTTCGAACTACGTGACAGAAGACTTCACCACGTACATCAACAGGAAGAGGAAAAACAACTGCCACGGGAACCATATCGAGATGCAGGCTATGGCAGAGATGTACAATCGACCAGTGGAAGTTTACCAGGAGGGCACAGAACCAATCAACACGTTCCATGGCATTCATCAAAACAATGACGAACCAatcagagtcagctaccatcGTAACATTCACTACAACTCTGTGGTGAACCCCAACAAAGCGACAATTGGAGTAGGCCTTGGGCTTCCTGCTTTAAAACCAGGGcagTATGTAGACCAGTCACTTATGAAGAACGCTATAAAGACCTCTGAGGAGTCATGGATCGAGCAGCAGATGCTGGAGGACAAGAAGAGAGCCACGGACTGGGAGGCCACCAACGAGGCCATTGAGGAGCAGGTGGCCAGGGAGTCCTACCTGCAGTGGCTCCAGGACCAAGAGAAGCAGGCACGCCAGccccgAAAGGCTAGTGCCACCTGCAGCTCGGCCACCGCAGCATCTTCTAGTGGTCTGGAGGAGTGGAGTGCCCGCTCTCCCCGGCAGCGCAGCTCAGCTCCCTCACCGGAGAACACTGACCCCTCTCACTCAGACACAAGCAACAAGCCTCCCTCCCCTGCTGGGGCAGCCCACATGTCTAAGCCCCCTTCACCTTGTGCCCCAGGTCCCAGCAACCAGGCTTGTGTTGGGCCTGATAGACCCACCTCCTCTCTGAAGTCTCTGTACCCGGCCCTGGAGTACCGTGCTATCATGAAAGAAATGTCACCCACCGCCTTTGGCTTAACAGACTGGGAGGATGATGAGATTCTGGCCTCAGTCTTGGCCGTTTCACAACAAGAGTACCTCGACAGCATGAAGAAGAACTCAATGCATAGAGAACCCTCTCCAGACAGCAGTTGATAAAGGggatcaagcacacacacaacgtCCCCTGGAAGGAAGGTGGCAGAACGGGGAAAAATCCAAACGTCATCATGTAACCATCCagtcttctctcctccttctccctatcATCCATCTCTGCCTCTCCACACTTACCAATAAAGATCCAGCATAATCAGACTCCACCCCCTTCCTTTCTAATACCATCATTGGACTTATTTAGTTGCATGTTTAATTGAACACAACCAATATCATCATAGAAAAcaagaagaaaaaatatataaaaatggtCATACTTATCCTCTTAATGATTGGTTAATAtaagtttgttttattttctTTTCTTGTTTGggatgaaaatacattttttttttcttggaATAAAAGAGGAAATCTTTCTGAAAAACAG
>XM_021566990.2
TCCTGTGTCGTCAGATCTGTGTTGATGTTTTGTGGGGAATGGAGAGCTTGGAGGACGGGAAGAGGGAGACGGTTTGTTATTGTTCaactagctagctatccccagaAAACAAAGCCAATAACAGATGATATCGATATATTTTGTAACCTAAGTGATTAAGGTCGAATATTGCACAAAAACTGACGGCCTTAACGGCAAAGTAGGCCTACTAGCTACATTCTGGAAAGAAGGAATCGTCACCCCGTTGACCCCCTCCCTAGCAGACAACCATGACGATTCTTCCGAAGAAGAAGCCGAACTCGAGTGTCGGTGTTTCGGACCACCCGGACGAGACTGACAGAAGGAGTGGCTCTGACCCACATCAACATCCACACGGAGGTCGTACAGGTGCAAGGCCGAGGGCCTCGCCGCCACCATGGTCCTATCAAGCCGCTCCACCTTCGACAAGGGAGGATAGACGGAACGAAGCTAGCTCTCGGCCGCAGCAGGCCTCTCCCCCTCCCGTGGTTTCAGGGTCTCCTGTTGGACCTGGGGATGGTAATGGGACTGGAGGAATACCATGCGTTGCTGGGACACGCGGAGAACTGTCAGGCAGCGTTGGTTGTGGTGGGGGAATTGGAAGTTGTTGTTCGGGGCCTGGTCTGAGTAAAAGGCGACGACAAGCAACCTGCTCTGGGGTGGCCGGTGGTGGAACACCCGGCGTAGCTGGAGGTGGCGGTGGAGGTCCTAGTGCTGATTCGGAGGAAGGTGCGGGTTACAACAGTGAAGATGAATACGAGAACGCATCGAGACTGCAGTCTGAGGACCCAGCGACAGTGGAGCAGGAGCACTGGTTTGAGAAAGCGCTTGGGGAAAAGAAAGGCTTCGTCATTAAAAAAATGAAAGAGGACGGAGCATGTCTCTTCAGAGCTGTCGCTGATCAAGTATATGGAGACCAAGATATGCATGAAGTTGTCCGTAAACACTGCATGGACTACTTGACGAAAAATGCAGACTACTTTTCGAACTACGTGACAGAAGACTTCACCACGTACATCAACAGGAAGAGGAAAAACAACTGCCACGGGAACCATATCGAGATGCAGGCTATGGCAGAGATGTACAATCGACCAGTGGAAGTTTACCAGGAGGGCACAGAACCAATCAACACGTTCCATGGCATTCATCAAAACAATGACGAACCAatcagagtcagctaccatcGTAACATTCACTACAACTCTGTGGTGAACCCCAACAAAGCGACAATTGGAGTAGGCCTTGGGCTTCCTGCTTTAAAACCAGGGcagTATGTAGACCAGTCACTTATGAAGAACGCTATAAAGACCTCTGAGGAGTCATGGATCGAGCAGCAGATGCTGGAGGACAAGAAGAGAGCCACGGACTGGGAGGCCACCAACGAGGCCATTGAGGAGCAGGTGGCCAGGGAGTCCTACCTGCAGTGGCTCCAGGACCAAGAGAAGCAGGCACGCCAGccccgAAAGGCTAGTGCCACCTGCAGCTCGGCCACCGCAGCATCTTCTAGTGGTCTGGAGGAGTGGAGTGCCCGCTCTCCCCGGCAGCGCAGCTCAGCTCCCTCACCGGAGAACACTGACCCCTCTCACTCAGACACAAGCAACAAGCCTCCCTCCCCTGCTGGGGCAGCCCACATGTCTAAGCCCCCTTCACCTTGTGCCCCAGGTCCCAGCAACCAGGCTTGTGTTGGGCCTGATAGACCCACCTCCTCTCTGAAGTCTCTGTACCCGGCCCTGGAGTACCGTGCTATCATGAAAGAAATGTCACCCACCGCCTTTGGCTTAACAGACTGGGAGGATGATGAGATTCTGGCCTCAGTCTTGGCCGTTTCACAACAAGAGTACCTCGACAGCATGAAGAAGAACTCAATGCATAGAGAACCCTCTCCAGACAGCAGTTGATAAAGGggatcaagcacacacacaacgtCCCCTGGAAGGAAGGTGGCAGAACGGGGAAAAATCCAAACGTCATCATGTAACCATCCagtcttctctcctccttctccctatcATCCATCTCTGCCTCTCCACACTTACCAATAAAGATCCAGCATAATCAGACTCCACCCCCTTCCTTTCTAATACCATCATTGGACTTATTTAGTTGCATGTTTAATTGAACACAACCAATATCATCATAGAAAAcaagaagaaaaaatatataaaaatggtCATACTTATCCTCTTAATGATTGGTTAATAtaagtttgttttattttctTTTCTTGTTTGggatgaaaatacattttttttttcttggaATAAAAGAGGAAATCTTTCTGAAAAACAG
>XM_021566989.2
GGAAGAGGGAGACGGTTTGTTATTGTTCaactagctagctatccccagaAAACAAAGCCAATAACAGATGATATCGATATATTTTGTAACCTAAGTGATTAAGGTCGAATATTGCACAAAAACTGACGGCCTTAACGGCAAAGTAGGCCTACTAGCTACATTCTGGAAAGAAGGAATCGTCACCCCGTTGACCCCCTCCCTAGCAGACAACCATGACGATTCTTCCGAAGAAGAAGCCGAACTCGAGTGTCGGTGTTTCGGACCACCCGGACGAGACTGACAGAAGGAGTGGCTCTGACCCACATCAACATCCACACGGAGGTCGTACAGGTGCAAGGCCGAGGGCCTCGCCGCCACCATGGTCCTATCAAGCCGCTCCACCTTCGACAAGGGAGGATAGACGGAACGAAGCTAGCTCTCGGCCGCAGCAGGCCTCTCCCCCTCCCGTGGTTTCAGGGTCTCCTGTTGGACCTGGGGATGGTAATGGGACTGGAGGAATACCATGCGTTGCTGGGACACGCGGAGAACTGTCAGGCAGCGTTGGTTGTGGTGGGGGAATTGGAAGTTGTTGTTCGGGGCCTGGTCTGAGTAAAAGGCGACGACAAGCAACCTGCTCTGGGGTGGCCGGTGGTGGAACACCCGGCGTAGCTGGAGGTGGCGGTGGAGGTCCTAGTGCTGATTCGGAGGAAGGTGCGGGTTACAACAGTGAAGATGAATACGAGAACGCATCGAGACTGCAGTCTGAGGACCCAGCGACAGTGGAGCAGCAGGAGCACTGGTTTGAGAAAGCGCTTGGGGAAAAGAAAGGCTTCGTCATTAAAAAAATGAAAGAGGACGGAGCATGTCTCTTCAGAGCTGTCGCTGATCAAGTATATGGAGACCAAGATATGCATGAAGTTGTCCGTAAACACTGCATGGACTACTTGACGAAAAATGCAGACTACTTTTCGAACTACGTGACAGAAGACTTCACCACGTACATCAACAGGAAGAGGAAAAACAACTGCCACGGGAACCATATCGAGATGCAGGCTATGGCAGAGATGTACAATCGACCAGTGGAAGTTTACCAGGAGGGCACAGAACCAATCAACACGTTCCATGGCATTCATCAAAACAATGACGAACCAatcagagtcagctaccatcGTAACATTCACTACAACTCTGTGGTGAACCCCAACAAAGCGACAATTGGAGTAGGCCTTGGGCTTCCTGCTTTAAAACCAGGGTATGTAGACCAGTCACTTATGAAGAACGCTATAAAGACCTCTGAGGAGTCATGGATCGAGCAGCAGATGCTGGAGGACAAGAAGAGAGCCACGGACTGGGAGGCCACCAACGAGGCCATTGAGGAGCAGGTGGCCAGGGAGTCCTACCTGCAGTGGCTCCAGGACCAAGAGAAGCAGGCACGCCAGccccgAAAGGCTAGTGCCACCTGCAGCTCGGCCACCGCAGCATCTTCTAGTGGTCTGGAGGAGTGGAGTGCCCGCTCTCCCCGGCAGCGCAGCTCAGCTCCCTCACCGGAGAACACTGACCCCTCTCACTCAGACACAAGCAACAAGCCTCCCTCCCCTGCTGGGGCAGCCCACATGTCTAAGCCCCCTTCACCTTGTGCCCCAGGTCCCAGCAACCAGGCTTGTGTTGGGCCTGATAGACCCACCTCCTCTCTGAAGTCTCTGTACCCGGCCCTGGAGTACCGTGCTATCATGAAAGAAATGTCACCCACCGCCTTTGGCTTAACAGACTGGGAGGATGATGAGATTCTGGCCTCAGTCTTGGCCGTTTCACAACAAGAGTACCTCGACAGCATGAAGAAGAACTCAATGCATAGAGAACCCTCTCCAGACAGCAGTTGATAAAGGggatcaagcacacacacaacgtCCCCTGGAAGGAAGGTGGCAGAACGGGGAAAAATCCAAACGTCATCATGTAACCATCCagtcttctctcctccttctccctatcATCCATCTCTGCCTCTCCACACTTACCAATAAAGATCCAGCATAATCAGACTCCACCCCCTTCCTTTCTAATACCATCATTGGACTTATTTAGTTGCATGTTTAATTGAACACAACCAATATCATCATAGAAAAcaagaagaaaaaatatataaaaatggtCATACTTATCCTCTTAATGATTGGTTAATAtaagtttgttttattttctTTTCTTGTTTGggatgaaaatacattttttttttcttggaATAAAAGAGGAAATCTTTCTGAAAAA

Function

symbol description
otud5 Enables Lys48-specific deubiquitinase activity; Lys63-specific deubiquitinase activity; and thiol-dependent deubiquitinase. Involved in several processes, including positive regulation of TOR signaling; protein deubiquitination; and response to lipopolysaccharide. Acts upstream of or within protein deubiquitination. Predicted to be located in cytosol.

NR:

description
OTU domain-containing protein 5 isoform X2

GO:

id name namespace
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0071108 protein K48-linked deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0032496 response to lipopolysaccharide biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K12655 OTUD5, DUBA; OTU domain-containing protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566988.2 False 2310 mRNA 0.50 9 66659009 66683358
XM_021566990.2 False 2307 mRNA 0.50 9 66659009 66683358
XM_021566989.2 True 2247 mRNA 0.50 9 66659066 66683355

Neighbor

gene id symbol gene type direction distance location
si:ch211-180f4.1 LOC106566497 coding upstream 5155 66640233 ~ 66653854 (+)
elk1 LOC106566498 coding upstream 37018 66599962 ~ 66621991 (+)
uxt uxt coding upstream 59450 66597637 ~ 66599559 (+)
usp11 usp11 coding upstream 76065 66569476 ~ 66582944 (+)
grm6a LOC106566502 coding upstream 93245 66524736 ~ 66565764 (+)
pim2 pim1 coding downstream 748 66684106 ~ 66688076 (+)
slc35a2 slc35a2 coding downstream 5704 66689062 ~ 66701670 (+)
bcap31 bcap31 coding downstream 19695 66703053 ~ 66726416 (+)
LOC110492587 gripap1 coding downstream 351041 67034399 ~ 67128826 (+)
LOC118939477 NA coding downstream 449752 67133110 ~ 67147363 (+)
G1402113 NA non-coding upstream 2725 66655723 ~ 66656284 (+)
G1402099 NA non-coding upstream 29667 66629135 ~ 66629342 (+)
G1402098 NA non-coding upstream 31126 66627564 ~ 66627883 (+)
G1402092 NA non-coding upstream 62804 66595567 ~ 66596205 (+)
G1402074 NA non-coding downstream 43402 66726760 ~ 66727658 (+)
G1402149 LOC105416325 non-coding downstream 48321 66731679 ~ 66732031 (+)
G1402156 NA non-coding downstream 67703 66751061 ~ 66752076 (+)
G1402162 NA non-coding downstream 71574 66754932 ~ 66796778 (+)
G1402201 NA non-coding downstream 137386 66820744 ~ 66821022 (+)
G1402066 NA other upstream 115324 66543311 ~ 66543685 (+)
G1401782 NA other upstream 634764 66019001 ~ 66024245 (+)
G1401354 NA other upstream 761946 65895891 ~ 65897063 (+)
G1401074 NA other upstream 1400165 65258515 ~ 65258844 (+)
G1401041 NA other upstream 1468734 65189990 ~ 65190275 (+)
G1402256 NA other downstream 231007 66914365 ~ 66914716 (+)
LOC110492593 LOC105017353 other downstream 788586 67459278 ~ 67476876 (+)
G1403412 LOC106566473 other downstream 969710 67653068 ~ 67653447 (+)
G1403463 NA other downstream 1055604 67738962 ~ 67739702 (+)
G1403655 LOC106566486 other downstream 1090198 67773293 ~ 67777491 (+)

Expression


Co-expression Network