pim2 (pim1)


Basic Information

Item Value
gene id pim2
gene name pim1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66684106 ~ 66688076 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566991.2
ACAGCAACAAACTTTCTTTGGCCAGACGTGTCAGTTTGTTGTGCAAATTGGTCTTTCTGGGAAGCGCATCTGTCTACAGCAACTTGCTCTGCGTTGGATATTTTGAAAACTGAAGATTCTTCACGGATTAAAATTCGAAATGGACATAACCTTGAACTAAATCTACACAACTGTTTTTACTTCGGATACATTCAATTTATAAAAATGTTGGACAAACGTAGTGTTGAGCTGCAATTGGATCAGGAGGATGTCAAAGGAAAAAGCGGTAAAGAGTCCTTTGAGAAGCATTACCAATTCGGTGCGCTTCTTGGAAGTGGTGGATTTGGGTCCGTCTTTGCTGGTCAACGCATCTCAGATGGTCTGCAGGTGGCAATTAAGCAAGTTTCAAGTGACAGAGTGCAGCAATGGGCGCGATTGCCAGATGGACCCAACCTGGTACCCATGGAGATAGCCCTGCTCTTACAGCTGGGGGGTGGTGCAGGGGCAGGACCCTGGCACCATGGGGTGATCAGGATGCTGGACTGGTTTGAGGTGCCAGGACAGGGATTCCTCATCGTGTTCGAAAGACCACAACCCAGTCAGGACCTCTTTGACTTCATCACAGAGCGGGGAGCCCTGGATGAGCCACTTGCACAAAGGTTCATGCTCCAGATAGTGGAAGCGCTGCGGTTCTGTCAAGCACAGGGGATCGTGCATAGGGATGTGAAGGATGAGAACATTTTAGTCGACACTCGGACAGGAGATGTTAAGATCATTGACTTTGGCTCCGGTGCTCTGCTCAAAGACACTGCTTACACAGAATTTGAGGGCACCAGAGTGTACAGTCCTCCTGAGTGGATCCAACATCAACACTATCATGCCCGGTCTCTGACTGTCTGGTCACTAGGAGTGCTTCTCTTCGACATGGTTTGCGGGGACATCCCCtttgagagggacagagacattgTGCAGGCCACGCCAAGTTTCACCAAACGCATTTCAAAAGaGTGCCAGTCTTTGGTTCGTTGGTGCCTTGCCTACAGACCAGAAGATCGGCCAAGCTTAGAAGAGATTTTACTCCATCCCTGGATGGAGTCATCTAACGACAGTGGAGACTTGCATGGGGATCACAACTCTTTGCCAAGCCAGTCAAGCCTATGATTCCTGGATACTATTGGGTGGCTAAAGAAACTTCAGATGCCTTTTAAGATCACACTTATCTTATATTCTCTGTGCTTAACTTATCAAGTCCCCCTATGGAAAGCTATTTATTTATAATTTTGTGGTGTTGCaatactattttattttaatttgacaAGTATTATACAAAAAATTCTGCACTAATGTACTACCTTAGTACAAAGAAATGTATCACACACTTATCTTGAGCCAAGGCAAACTATATCTAAATTATCTTCATAAGTGTTAGAAAACAGCACATTCCATAGTAATATAGACCATATTGGGAAGAGATATGTatgctttatttaaaaaaaaaaaatcatttatgGGTATTTATTTAAATGACTATTTATTCATCTTTAGGGTTGGACTTTCTGTTTACATCAGTTATACTGGAGGCATGTCGAAGTTTCTGATGCCATTTGATTCTATTATTTAATGTGATTTGGTTGAGATCACATACTTTTCCATGTGAAGACCTGGTTTTACAGGTTATTTAAGTTACCTCGTTTCAAGAGGAATAGAGGACTACAAAACAACAGTAGTCCGGAGCACTATGGATATCTTAAATTTTCCATGGATTTTGTCCTGATGGTTTGGTAGTGACACAGGCAAGGCAACATTTCTATGGACACGCAAGTCAGGCTCATACGCCTCATACAATGGACTTATTCGCTGGAGCTGAGTAGTCTTGGGAATGGGACATTGACACTGTTTTCTCTGCAaaataatatttgcatattattttggaactttaaCGCATTTAGAATGTCAAATAGTATCCAGGATGTAATACTATCCTTCAGGATTGACCTTTAGAATGTCATTTTTGTGTAATTTTTTGTGATGGGCAGGCCTCCAAGGGTTTGTCAACACCACAGCAATGAATCATCCAAGAATGTGTCCAATCCAGAAACTAAACTGGGTGATCTTTATCTGGGAGGGAAGTTAAAATCTGTGCTTCCATTTTCCTTCCAAGGACGTATGTTCTTGTTTTCTGTGGAGTTTGAAGGTTTACCTGAAGTAAATGCCTCAGTGTTTTAACCAGTGACTGTTGTTCAAGGCAATAGACAACGTTCAAAACTGGGTGATTTTGACTTTTgtgttatttatttacttttattCTATTGTTGCAAGTGGAACCCACATGACcaattgtatgtatgtatgtatgtatgtatatatgttgttgtttaaaTGTTGGTGAGACTTCATCATATGCCTTAATCTAAATCCTACCTTAATGATGGGACTGTAATGACAAACATTTTCTCATTCATGACTCAATTTACCCAATGGAAGAGTTAATACATTGAAATCTTGTCATGAaaattggataaaaaaaaaaaacataattcttaACAATTAAGTGGAATTATCATTGACATAATCATAGTCAATGAGCTGAGGTAGCATAGTCATATTTGTTGTAAATACTTATGTATTGTTTTATACACTGTCAGTTGTCACAAATCTCTTTACATTAAATGAGAATTtcaggagacacattctgtcaaATTCTTGATTCTTAAGTGTACATAAAGGCTGTCAATGTT

Function

symbol description
pim1 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within camera-type eye morphogenesis and optokinetic behavior. Predicted to be active in cytoplasm. Is expressed in brain and eye. Orthologous to human PIM1 (Pim-1 proto-oncogene, serine/threonine kinase).

NR:

description
serine/threonine-protein kinase pim-1

GO:

id name namespace
GO:0048593 camera-type eye morphogenesis biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007634 optokinetic behavior biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566991.2 True 2717 mRNA 0.40 7 66684106 66688076

Neighbor

gene id symbol gene type direction distance location
otud5a otud5 coding upstream 748 66659009 ~ 66683358 (+)
si:ch211-180f4.1 LOC106566497 coding upstream 30252 66640233 ~ 66653854 (+)
elk1 LOC106566498 coding upstream 62115 66599962 ~ 66621991 (+)
uxt uxt coding upstream 84547 66597637 ~ 66599559 (+)
usp11 usp11 coding upstream 101162 66569476 ~ 66582944 (+)
slc35a2 slc35a2 coding downstream 986 66689062 ~ 66701670 (+)
bcap31 bcap31 coding downstream 14977 66703053 ~ 66726416 (+)
LOC110492587 gripap1 coding downstream 346323 67034399 ~ 67128826 (+)
LOC118939477 NA coding downstream 445034 67133110 ~ 67147363 (+)
LOC110492589 kcnd1 coding downstream 483754 67171830 ~ 67251627 (+)
G1402126 NA non-coding upstream 11026 66672240 ~ 66673080 (+)
G1402113 NA non-coding upstream 27822 66655723 ~ 66656284 (+)
G1402099 NA non-coding upstream 54764 66629135 ~ 66629342 (+)
G1402098 NA non-coding upstream 56223 66627564 ~ 66627883 (+)
G1402074 NA non-coding downstream 38684 66726760 ~ 66727658 (+)
G1402149 LOC105416325 non-coding downstream 43603 66731679 ~ 66732031 (+)
G1402156 NA non-coding downstream 62985 66751061 ~ 66752076 (+)
G1402162 NA non-coding downstream 66856 66754932 ~ 66796778 (+)
G1402201 NA non-coding downstream 132668 66820744 ~ 66821022 (+)
G1402066 NA other upstream 140421 66543311 ~ 66543685 (+)
G1401782 NA other upstream 659861 66019001 ~ 66024245 (+)
G1401354 NA other upstream 787043 65895891 ~ 65897063 (+)
G1401074 NA other upstream 1425262 65258515 ~ 65258844 (+)
G1401041 NA other upstream 1493831 65189990 ~ 65190275 (+)
G1402256 NA other downstream 226289 66914365 ~ 66914716 (+)
LOC110492593 LOC105017353 other downstream 783868 67459278 ~ 67476876 (+)
G1403412 LOC106566473 other downstream 964992 67653068 ~ 67653447 (+)
G1403463 NA other downstream 1050886 67738962 ~ 67739702 (+)
G1403655 LOC106566486 other downstream 1085480 67773293 ~ 67777491 (+)

Expression


Co-expression Network