LOC118939570


Basic Information

Item Value
gene id LOC118939570
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66698638 ~ 66706256 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036590.1
CCTCCCTTCCTCAGAAACCATTctagaacaagaacagactggaGCCAGTTGGTGTGCTCCGGGCGGGGGAGGTGGGCAGGCAtggatactcacacacacaggagcaggGCGAAGCCAGCAATGTACTCATTCCTCTGGGCTCTGAACAACTTCATGTGAATGTGATCTACAGCCACTGGGTTGTTGGTCAGGTCCACCTTCTCAGTCACACTGTACTTTCGCACCTCCCTGAACGCATCTACATAGAAACAGAGACAAGAGCATGGGAAAACTATGGAAGACTAAAGTGGTGTGGGTTTTTCCTCGGCCACTACACAATTTGTGATCgacaatgacccaaaacacacctccaggctgtgtaagggctattttaccaagaaggagagtgatggagtgctgtatcagatgatctggcctccacaatcacccgacctcaactcatttgagatggtttgggatgagttggaccacagatggaaggaaaagcagccatcaagtgctcagcatatgtgggaactccttcaagactgttggaaaagcattccacatGAAGCTGGCTGAGTGTGTGGAaaactgtcaaggcaaagggtggctactttgaagaatctaaaatattttaatttgtttaacacttttggttactacatgattccatgtgttaattcatagtttgtcttcaccattattctacaatgtagtaataaaaatagtaaaaataaagaaaaacccttgaatgagtaggtgtgtccaaacttttggctggtactgtaagTCAAAAACTCTTAAAGGCAGTGTACTGTATCATTTCCGACAAAAATGGTTGACTTGATGTTTATCCTGATTTTTTCCTCCCCTGATATTCACTTGTCTCTCACTCCCAGTTTATCATGAAAAAATTGTAGGCAAGCCGATGTTACTGGTTTGACTGGGATAGTTGTCTTTTAACATTGATGGACAATAGCATCTCTCGACATCTCTGTCACTACAGGCGATAATTCTTCGTTGGAAAAAGATGCAGGGATAAGAACGGCCTTATGACTTAAACGGATGCAATAGTGCACTGGATCACGGTGATAACACTCCTGGTGGTGCTCTGCACCAAGTGTAATATTACAATGTTAACATTCTGTTAGCTCTACTTATAAAGGGACACAGGATTTTGTACTTGCATTACAATTATACTAAACAcaattataaacgcaacatgtaaagtgttggtcccatgtttcatgagctgaaataaaatatcccagaaatgttcca
>TU1602005
TGTGCTCCGGGCGGGGGAGGTGGGCAGGCAtggatactcacacacacaggagcaggGCGAAGCCAGCAATGTACTCATTCCTCTGGGCTCTGAACAACTTCATGTGAATGTGATCTACAGCCACTGGGTTGTTGGTCAGGTCCACCTTCTCAGTCACACTGTACTTTCGCACCTCCCTGAACGCATCTACATAGAAACAGAGACAAGAGCATGGGAAAACTATGGAAGACTAAAGTGGTGTGGGTTTTTCCTCGGCCACTACACAATTTGTGATCgacaatgacccaaaacacacctccaggctgtgtaagggctattttaccaagaaggagagtgatggagtgctgtatcag

Function

NR:

description
PREDICTED: B-cell receptor-associated protein 31-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036590.1 False 1263 mRNA 0.42 2 66698638 66706256
TU1602005 True 353 lncRNA 0.50 2 66699496 66706204

Neighbor

gene id symbol gene type direction distance location
zgc:86609 LOC106566500 coding downstream 111583 66583103 ~ 66587055 (-)
abt1 abt1 coding downstream 194683 66502032 ~ 66503955 (-)
cdk16 cdk16 coding downstream 219496 66442214 ~ 66479142 (-)
tsr2 tsr2 coding downstream 261736 66433948 ~ 66436902 (-)
si:dkey-32e6.6 LOC106566508 coding downstream 277574 66382003 ~ 66421064 (-)
slc6a8 slc6a8 coding upstream 32070 66738326 ~ 66767036 (-)
LOC110492586 LOC106566493 coding upstream 116078 66822334 ~ 67012161 (-)
LOC110492588 LOC106566492 coding upstream 315679 67021935 ~ 67033045 (-)
LOC110492592 LOC106566478 coding upstream 765688 67471944 ~ 67492651 (-)
LOC110492594 LOC106566480 coding upstream 793409 67499665 ~ 67510144 (-)
G1402750 pim1 non-coding downstream 10563 66684891 ~ 66688075 (-)
G1402821 NA non-coding downstream 43893 66654107 ~ 66654745 (-)
G1402805 NA non-coding downstream 70780 66627605 ~ 66627858 (-)
G1402758 NA non-coding downstream 76743 66616762 ~ 66621895 (-)
G1402797 LOC106566498 non-coding downstream 85021 66613390 ~ 66613617 (-)
G1402751 NA non-coding upstream 20507 66726763 ~ 66727652 (-)
G1402855 NA non-coding upstream 30114 66736370 ~ 66736681 (-)
G1402888 NA non-coding upstream 90889 66797145 ~ 66797353 (-)
G1402906 NA non-coding upstream 112765 66819021 ~ 66819255 (-)
G1402707 LOC106566505 other downstream 203971 66484901 ~ 66494667 (-)
G1402686 srpk3 other downstream 272316 66425551 ~ 66426322 (-)
LOC110492562 LOC106568106 other downstream 944028 65715711 ~ 65754610 (-)
G1401617 NA other downstream 1062266 65635482 ~ 65636372 (-)
si:ch211-117c9.5 LOC106566567 other downstream 2250166 64445355 ~ 64485638 (-)
G1403498 NA other upstream 737165 67443421 ~ 67444179 (-)
LOC118939478 LOC106566484 other upstream 2084933 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 2497030 69203286 ~ 69207158 (-)
G1405016 nsfl1c other upstream 2571571 69277827 ~ 69280359 (-)
G1405172 NA other upstream 2811499 69517755 ~ 69518113 (-)

Expression


Co-expression Network