LOC118939477



Basic Information


Item Value
gene id LOC118939477
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 67133110 ~ 67147363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XR_005036395.1
TTTGAGCAGCGCGCGCTGCAAATACCAAATAGATGATTGTTAAATTgcgactgtcagtgaaaagcagagAGACCCAGCTAGGCATATCGcaatatttaaaaatacaatCGTGGAGAAACTGTTTGGAAAATAAATAGCTATTGCTGTAAAGAGAAGACAATGAAAAGACTTCAATCTGTCTTTTAGTTAGCATTATTCTTAACTTAATTAAGCGAACAGTAGCCTGTCTTATTGGCACCAGCCGAGAACATGTGCCATATCCCCGCCATCATCCCTGCATCATCCCAGCTCTCACAAGCTTCCTTCAATACCAGCCAGGGAGGGGAAACCTGTGATGCAACCAATTTCCTACGTCAGTGCCCTCTTACTACCAGCAGACGTTGCTATCTCCTGCCCTTCAATAGTGGGTGTGCAGTGTGTCATTGCGGCAGTGCACGCACACGGCCATCCGGCGTGGGAGGCtgtcagagagtgtgtgtgggaatCTCCTAATTCAGAATGAAGGGTTTAAATCCAGTCTTTCTTGAAGAAACCATTTATcggggggagggggaaagaggagtcAAATGATTGTTTGCCATATATCTCTCTTTGTGCTGTTTGATCCATTCCAGTAGTTGTCTGGAGATCATGAAAACAGCCTCCCTGGAGTTTTATTATACACTCAATCCCCTTTTCACATCCCAAAAGAGATGAGAAAGATGTCCCCCCTACTATCTGAGCCCATGGAATACGTCTTAGAATAGCTCTTGTCTTAAAGCTCAGGGTtaataactatatactgtaggacatgtCTTTATTCATGTTGTACAAActcaaattatatatttttgaatGAGTGTAAAGAATTTGTCATACATTTTGCTTAGCTACTGTCTGACCGAACAGCCCATGTCTGTCCCAACAATTGATGTGATTCATTTGTGCCTAAGGTCAAGAAAAATACTAGACTAACCTCAATGATTTTTTTTACATCAAATGTTATTTTAGCTGGCTTAGATGTTTCCCCATGTGTTCTTGCCCCCTTAGGAATAAATAGCCCTTATTGTCAAATGAGAAGTTGGATTTTTATGGATTTTAAAGATGAACTGTTTTTGCAGGAACCACTGGTAATGACCATTGCTTTATAGTTCTCTCGGGACAGTTAATTAATCTGCATAGTCCATTTCTCTGGGCCAACGtgcgctgtctgtctgtccactgaTGGCTTTTCCAACCTGTCCACTTCATTACTCTGCCATGCTTGTAAACTGGGCCTTATGATGCACTAGAGATGTGATTATATTGGTAGGAACAGTCCATTCAATTTACCATCAGGAGTCTATCTATAatgcagtagtagtagcaccatcaccagctgtagtagtagtagtagtagtagtagtagtagcaccagtagtagtagctgtagtagcaccagcaccagcaccagctgtagtagtagtagtagtagta

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XR_005036395.1 True 1455 mRNA 0.42 3 67133110 67147363

Neighbor


gene id symbol gene type direction distance location
LOC110492587 gripap1 coding upstream 4284 67034399 ~ 67128826 (+)
bcap31 bcap31 coding upstream 406694 66703053 ~ 66726416 (+)
slc35a2 slc35a2 coding upstream 431440 66689062 ~ 66701670 (+)
pim2 pim1 coding upstream 445034 66684106 ~ 66688076 (+)
otud5a otud5 coding upstream 449752 66659009 ~ 66683358 (+)
LOC110492589 kcnd1 coding downstream 24467 67171830 ~ 67251627 (+)
LOC110492590 LOC106566489 coding downstream 112686 67260049 ~ 67275741 (+)
pim1 LOC106566482 coding downstream 251498 67398861 ~ 67402310 (+)
LOC110492593 LOC105017353 coding downstream 311915 67459278 ~ 67476876 (+)
LOC110492619 LOC106566466 coding downstream 1128132 68275495 ~ 68279289 (+)
G1402364 NA non-coding upstream 8068 67124642 ~ 67125042 (+)
G1402325 LOC106566492 non-coding upstream 107681 67023337 ~ 67025429 (+)
G1402323 NA non-coding upstream 114462 67018349 ~ 67018648 (+)
G1402254 NA non-coding upstream 220684 66912211 ~ 66912426 (+)
G1402397 NA non-coding downstream 22074 67169437 ~ 67170722 (+)
G1402399 NA non-coding downstream 105374 67252737 ~ 67253139 (+)
G1403135 NA non-coding downstream 128588 67275951 ~ 67276164 (+)
G1403158 NA non-coding downstream 130384 67277747 ~ 67278061 (+)
G1402256 NA other upstream 218394 66914365 ~ 66914716 (+)
G1402066 NA other upstream 589425 66543311 ~ 66543685 (+)
G1401782 NA other upstream 1108865 66019001 ~ 66024245 (+)
G1401354 NA other upstream 1236047 65895891 ~ 65897063 (+)
G1401074 NA other upstream 1874266 65258515 ~ 65258844 (+)
G1403412 LOC106566473 other downstream 505705 67653068 ~ 67653447 (+)
G1403463 NA other downstream 591599 67738962 ~ 67739702 (+)
G1403655 LOC106566486 other downstream 626193 67773293 ~ 67777491 (+)
G1404105 NA other downstream 1142152 68289515 ~ 68290086 (+)

Expression



Co-expression Network