pim1 (LOC106566482)


Basic Information

Item Value
gene id pim1
gene name LOC106566482
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 67398861 ~ 67402310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567007.2
TTGTCCTTCCGCTGCCCTTACTCAAATCCAAGGAGCCGGTGTCTTTGCGACTAAAACGTATTAGGAGCTGGTTTTCTTTTAATTTGACTTACTGTTTACAACTATTGAGGTTGTTAATAGTCATTTTTTAATCATTGGGCTAGTCGTTATTTCTACTCACTGGATACCGAAGCATTTATGGTCAAGGATCAAATACGAGTCTTCATGAGATCCGGATTAGAGAGCATTCCTGACGCATTTTCCCCCCCAGCTACAACAACGTGGATCACACGCCCGATAGTGGAACTGTATCCCACGACGGAATATTTGTAGAATAAATCACACATTTCGTGGATTACAGGAATGCTGTTGTCGAAATTAAACTCATTCGCTCATATCTCCACCGTTGATATGCCGGCGAAAATCCAGCTTCAAATTCACCAAGggaaggagagggagccaTTTGAAAAGGTTTACCAGGTCGGCGCTGTGCTGGGAAGCGGCGGGTTTGGCACAGTCTATTCAGGCACGACAATTTCAGATGGAGCACTGGTTGCTGTCAAACATGTGGCCAAGGATCGGGTCTCGGATTGGGGAGAGATGCCCAATGGCTCTCGCGTCCCTATGGAGATTCTACTCTTGAAGAAAGTTGGAAATGGGGCTCGGGGGGTAATAAAGATGCTGGACTGGTACGAGCGACCTGACAGCTTTATTATTGTCATGGAACGACCGGAGAACGGCAAGGACTTGTTTGATTTCATCACTGAGAAGGGCGCCTTACCAGAGGAGCTGGCAAAGAACTTTTTCCGTCAGGTTCTTGAAGCGGTGCGACACTGCCACAACTGTGGGGTTGTACACAGGGACATCAAGGACGAAAATATCCTCATCGATCTTCGGACGGGCGAAATTAATCTTATTGACTTTGGATCCGGGGCATTGCTCAAAGACACTGTTTACACCGACTTCGACGGTACTAGAGTGTACAGCCCACCAGAATGGATTAAATACCATCGGTACCATGGGCGGTCAGCCACAGTTTGGTCTCTGGGTGTCCTGCTGTATGACATGGTGTGTGGAGATATCCCCTTCGAACAGGACGAGGAGATTGTACGAGGCCAGGTGCTCTTCAGACGAAGAATCTCCACAGAGTGCCAGCAGTTGATCAAGTTGTGCTTGTCCCTGAGACCTGCTGAGAGGCCATCGTTTGAGGACATCATCAATCACCCGTGGATGCAGAGCACAGTGTCCTCTGCAGAGCAGAGCAACGAGATCCGACTGCACAGCATCAGCCCTGAGCCTGCTGCCTTCACCACCGTGGTGGCCCAGTGACGGCATGGCTGCACTGACAGAGACTAGTGGTACACCCAGAGGACTGATGTGGCCGTACACTGAAACACAACATATGTTATACAGAAGGAAGTTACAGATGACTCTTGttaaatctctctccctctttctcttgtgGCCAGACCCCACCTGTTCACACAGCTTTTGGACTCCATGAAAACCAAAGTCCTTAATAGCTACTTGTAATAGCGAAAGCTATTCTCACCCTTACGAAGGACTTGCTCTATAATATTGGCTGTGGCGTGAGATTATGTTCACCAGAAAAAAGTCCATCCCTACCCATGTGATTGTTCTACTGAAGGCGTGGACAGTCTTTGTTACATAACTAGCTACCAACCAGCCACTGTACTCTGTTGTTGCTCACTGATGAGTGGGAGTCAGAGGAAGCAGATCTAAATGCCTTTGGTTGTGAGTCAGATTGTTGGGACCCTGGAAATACTTGAATAAAATAATACTTTACAAGGCTTTATTTCCTATCTCATAGGCATAGATCAGTAAAGCCTATGCCATATTACAATGTCGACAGCAACAAGACAACCTCACATGGTGCAAACAAGAACCTGAAAACTTACCTCACTTTCCTGCATCCACCTCTGAGCTTTTAACTCCTGTCCACACAGTTACCACTCATCCAGATGTTAATGCACACTGAAATGCAAAGCACCACACTGAAACACTAAATGTCCTGCTCTTTTGTTTATGTGTAAACATGTCTCTGTCTTTTGCATAACAGGCTAGCATTGAGGCCATTGTGAATATTTATTTGTGGGTTTTTTTCTTTCACTCGAGCTACGtggaattatttatttattttaagagaATTTTGGCTGTATATTTCATTCCACGGTTGTTGAAGGGCCCACagattatttaaatgtattttgaccATATTTATGGTTTAAAATCTTCTGAGCAGACGTGTATATGTGTAAATAACCTTCAAAGCACTTCCATTTTAATGTAACATTGAACGTCTACTGATGGACATTTGTTGTTACTGTATTTGTCTGATGGGGATGAAATGACTGTTACATGCATCAACTTGTTTTCACCTCTAGTTGTATGATTGtggcttgttttgtttttttcatccAAATTGTAAATtgttaaaaatatttttataCGTTTCTcaataaatcttttttttttaccttga

Function

NR:

description
serine/threonine-protein kinase pim-1-like

GO:

id name namespace
GO:0048593 camera-type eye morphogenesis biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007634 optokinetic behavior biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04702 PIM1; proto-oncogene serine/threonine-protein kinase Pim-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567007.2 True 2482 mRNA 0.44 6 67398861 67402310

Neighbor

gene id symbol gene type direction distance location
LOC110492590 LOC106566489 coding upstream 123120 67260049 ~ 67275741 (+)
LOC110492589 kcnd1 coding upstream 147234 67171830 ~ 67251627 (+)
LOC118939477 NA coding upstream 251498 67133110 ~ 67147363 (+)
LOC110492587 gripap1 coding upstream 270035 67034399 ~ 67128826 (+)
bcap31 bcap31 coding upstream 672445 66703053 ~ 66726416 (+)
LOC110492593 LOC105017353 coding downstream 56968 67459278 ~ 67476876 (+)
LOC110492619 LOC106566466 coding downstream 873185 68275495 ~ 68279289 (+)
LOC110492620 NA coding downstream 898718 68301028 ~ 68345013 (+)
LOC110491164 LOC106566465 coding downstream 946463 68348773 ~ 68357169 (+)
LOC110492622 LOC100380652 coding downstream 994452 68396762 ~ 68405191 (+)
G1403255 NA non-coding upstream 38504 67359952 ~ 67360357 (+)
G1403245 NA non-coding upstream 44135 67348443 ~ 67354726 (+)
G1403232 NA non-coding upstream 58912 67339620 ~ 67339949 (+)
G1403228 NA non-coding upstream 61707 67336911 ~ 67337154 (+)
G1403184 NA non-coding upstream 96901 67301708 ~ 67301960 (+)
G1403308 NA non-coding downstream 13687 67415997 ~ 67420314 (+)
G1403313 NA non-coding downstream 26429 67428739 ~ 67429903 (+)
G1403317 NA non-coding downstream 36573 67438883 ~ 67439198 (+)
G1403328 NA non-coding downstream 79360 67481670 ~ 67528492 (+)
G1403329 NA non-coding downstream 81805 67484115 ~ 67486897 (+)
G1402256 NA other upstream 484145 66914365 ~ 66914716 (+)
G1402066 NA other upstream 855176 66543311 ~ 66543685 (+)
G1401782 NA other upstream 1374616 66019001 ~ 66024245 (+)
G1401354 NA other upstream 1501798 65895891 ~ 65897063 (+)
G1401074 NA other upstream 2140017 65258515 ~ 65258844 (+)
G1403412 LOC106566473 other downstream 250758 67653068 ~ 67653447 (+)
G1403463 NA other downstream 336652 67738962 ~ 67739702 (+)
G1403655 LOC106566486 other downstream 371246 67773293 ~ 67777491 (+)
G1404105 NA other downstream 887205 68289515 ~ 68290086 (+)

Expression


Co-expression Network