LOC110492595 (LOC106566479)


Basic Information

Item Value
gene id LOC110492595
gene name LOC106566479
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 67512498 ~ 67571087 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947610.1
GAAATTTCAGTCGTTCCTTGTGGGCTCTCCGTTCTGTCGTTGCCCCCTCTCCGCCGTCATCTCTCCGCCACTACCGCCCCTTTCACAGACAACACAGGGACAGACAGcactcttctctcctttctctggctGACAAAATGACAGCCGTTATGGACCTCAACCAGATTGCCATCGCCTGTTCGGCCATTGCTGTAGTGGAGCATGACATCGAGACCTCCCATGGTGTTCTGCACGTGACGATGAGGGGCACCCCCAAGGGCAATAGACCAGTCATCCTCACCTACCATGACATTGGTCTCAACCATAAGTCCTGTTTCAACACACTGTTCAACTTTGAAGACATGCAGGAGATCACATCCCACTTCGCTGTGGTCCACGTGGACGCCCCAGGACAGCAGGAGGGTGCTCCCCCATTCCCCACAGGgtACCAGTACCCTACCATGGATGAGCTGTCTGAGATGCTGCCGTCTGTCATGACTCAGCTGAAGGTGACCAGTGTGATTGGGATTGGAGTTGGCGCTGGAGCCTACATCCTGTCCAGACTGGCTCTCAATGAGCCGGCCCTGGTCGAAGGTCTGGTCCTCATCAATGTGGACCCCTGTGCAAAGGGCTGGATGGACTGGGCTGCCTCCAAGATGTCCGGTTGGACCAGCAACCTGGTGGACATAGTGATGGCCCACCACTTCAGTGATGATGAGCTGTCTGACAACCAGGAGATCACCCAGACGTATCGGCTGCACATCGCCCAGGATATCAACCAGGAAAACCTGGCCCTCTTCTGCAATGCCTACAACAGCCGTCGGGACTTGGAGATTGAGAGGCCTGTCACCGGTCTGACTGACGACACGGTGAACACATTGACATGCACTTCTCTGCTGGTGGTTGGTGACACGTCCCCGGCTGTCGACGCAGTGGTTGAATGCAACTCGAGGTTAAATCCAACCAAAACAACCCTTCTTAAGATGCAAGACTGTGGCGGGCTTCCTCAGGTCATCCAGCCGGGTAAACTAGCGGAGGCCTTCAAATACTTTATCCAGGGAATGGGTTACATGCCCACGGCCAGTATGACCCGCCTGGTGCGTTCTCGTACCCACTCTACCTCCAGCATGGGCTCTGTGGAGGGGAGTCGCAGTCGCACCCACACACAGCTAGAGGGCGCCACTGCTGCCGGCCTGGGTGTCGAACAGGCCAGGCCACAGACCATGGAGGTTTCCTGTTAAAGAACCCAGCCCAGAAAAccaccacctcccccttcctctctgtctccctccctctcttttttcctTTCCCATGCTCAAGGTCAGAGAGGATTGGAATCCTGAGCGGGCGTCTGAAACGTGTTCTGAAAGATAATTTATGAAGACAGAAGCAGTCAGGTTCTCTGCTGTGTTCTCTCACCATTTCCTGTTGTTGTCTGTCTATCATGCCTGTCTGTGCATGACTGCTGTGGTACGGCAACCTGAAAGTCAGTAAGCAGGCGGATGATGCTGCTTgtctggttttccttttgttgtCTACCAGCTCTCCCCATTAAAAGTTGTTTTTTTAATCTTTGAGATTTGAGATATATTTGTATTTAGAACTATTTTGGGTCAGTGTGTCAGTTTAAAGATAACAGATGGAAAGGCATCAGGAGTTTTCTCTTGTAAAGTACTCTATACGGAGTAATGTtgcccctctttctgtctccctctgggGTCTTCCTCACCTTGCTAATTGGTAAGATCAGACCAAATCACACCACCCCTCCTTAGTGATCCATTCCTTAATCAGTCTCATGACACACCAGATtcttttttaattgtttttatgtTGTGATTTGTGGAAAAAAATACCATTTGCTTTCCTGGATTGCAATACGATGTGATAAACTTGCTCCTGCTCTGTACCTTTATACCAAGAATATCTGACAGAATGGCCCTCTAGTAGATGAAACGTAATGGACGTGTCTGTAGAATTGCTTTTGTCTAGATGTATCTAGAAATAGTTGCCTTGTTTGATATTTTCTTTTTCGAGTGAGTTATTTGAAATGGCAGGTCCTGGGTTTTTGATCCCACCCACATTTATTATTGACGGGCAGAGAAAAGaaccaacccactgggcacagatgtcagttcagtgtgtattccatgttggttcaacgtaatttcatcgAAACGATGTGGAAACGACGTTGATTCGACCagcgtgtgcccagtgggaacatTTTACTGTAGTTTATTGAAAACTCAAGTCAAATGCGAAGAGTACCTAAACTAGCCCCAGCTCAGTCAGAGGTGAGTAAATGTCTGCGAATTGAGGTACAGATAACATTACTACCTCTTTCATAAAATAGAACTAAAATATATGAACTTACATTGCTTCCAGTTAGTAGAAAACAGTATGTTTTCCCTcctgattaaataaagatgaGGTGAAAACGACAACGGGTCAGATGCCTGAGGGACTGTGGATTGTGTAATAAATGTTTTTATAGAGTTTCTTATTAATGTTATTAGTTGGTAGTTTTCTCTGTGGTTTTCCTGCATTTCTCTCTGGTTGTACTACAGCTTGGGTGAACACGTGGTGATGATGCATTGGACTCTGTCTGCATAGTATACGGGGTGCTGTTAGTCATACTGTGCTGACTATGTCAATTTGTACTGAATCATAAAATAAAGCTAGAAGCTGTACATGA
>XM_021567021.2
TCCTATCACTCATACTGGTCATCCTCTAGGTTCGGGTTGAATGGAAATGTATTGGAGTTGGTCTCCATTTACACGTTGAAGGGTCCTTTCATGTGTCAGATCAGCGTGCTGCTGGTTTCAGTTGGTCTCCGGCGGTTCGAGCACTACGAGACAGCCAGTCCGACTGCTTTCGCCACTGTTTTATCCTAAATCAACGGGTGTGATTGACAGCTGTCAGACCTAAGTTGAGATGGACGAGCTCCAGGACGTTCAGCTGACTGAGATCAAGCCACTGCTCACAGATAAGAATGGGCGTAACTTCCAGGACTTTGATTGTCAGGAGCATGACATCGAGACCTCCCATGGTGTTCTGCACGTGACGATGAGGGGCACCCCCAAGGGCAATAGACCAGTCATCCTCACCTACCATGACATTGGTCTCAACCATAAGTCCTGTTTCAACACACTGTTCAACTTTGAAGACATGCAGGAGATCACATCCCACTTCGCTGTGGTCCACGTGGACGCCCCAGGACAGCAGGAGGGTGCTCCCCCATTCCCCACAGGgtACCAGTACCCTACCATGGATGAGCTGTCTGAGATGCTGCCGTCTGTCATGACTCAGCTGAAGGTGACCAGTGTGATTGGGATTGGAGTTGGCGCTGGAGCCTACATCCTGTCCAGACTGGCTCTCAATGAGCCGGCCCTGGTCGAAGGTCTGGTCCTCATCAATGTGGACCCCTGTGCAAAGGGCTGGATGGACTGGGCTGCCTCCAAGATGTCCGGTTGGACCAGCAACCTGGTGGACATAGTGATGGCCCACCACTTCAGTGATGATGAGCTGTCTGACAACCAGGAGATCACCCAGACGTATCGGCTGCACATCGCCCAGGATATCAACCAGGAAAACCTGGCCCTCTTCTGCAATGCCTACAACAGCCGTCGGGACTTGGAGATTGAGAGGCCTGTCACCGGTCTGACTGACGACACGGTGAACACATTGACATGCACTTCTCTGCTGGTGGTTGGTGACACGTCCCCGGCTGTCGACGCAGTGGTTGAATGCAACTCGAGGTTAAATCCAACCAAAACAACCCTTCTTAAGATGCAAGACTGTGGCGGGCTTCCTCAGGTCATCCAGCCGGGTAAACTAGCGGAGGCCTTCAAATACTTTATCCAGGGAATGGGTTACATGCCCACGGCCAGTATGACCCGCCTGGTGCGTTCTCGTACCCACTCTACCTCCAGCATGGGCTCTGTGGAGGGGAGTCGCAGTCGCACCCACACACAGCTAGAGGGCGCCACTGCTGCCGGCCTGGGTGTCGAACAGGCCAGGCCACAGACCATGGAGGTTTCCTGTTAAAGAACCCAGCCCAGAAAAccaccacctcccccttcctctctgtctccctccctctcttttttcctTTCCCATGCTCAAGGTCAGAGAGGATTGGAATCCTGAGCGGGCGTCTGAAACGTGTTCTGAAAGATAATTTATGAAGACAGAAGCAGTCAGGTTCTCTGCTGTGTTCTCTCACCATTTCCTGTTGTTGTCTGTCTATCATGCCTGTCTGTGCATGACTGCTGTGGTACGGCAACCTGAAAGTCAGTAAGCAGGCGGATGATGCTGCTTgtctggttttccttttgttgtCTACCAGCTCTCCCCATTAAAAGTTGTTTTTTTAATCTTTGAGATTTGAGATATATTTGTATTTAGAACTATTTTGGGTCAGTGTGTCAGTTTAAAGATAACAGATGGAAAGGCATCAGGAGTTTTCTCTTGTAAAGTACTCTATACGGAGTAATGTtgcccctctttctgtctccctctgggGTCTTCCTCACCTTGCTAATTGGTAAGATCAGACCAAATCACACCACCCCTCCTTAGTGATCCATTCCTTAATCAGTCTCATGACACACCAGATtcttttttaattgtttttatgtTGTGATTTGTGGAAAAAAATACCATTTGCTTTCCTGGATTGCAATACGATGTGATAAACTTGCTCCTGCTCTGTACCTTTATACCAAGAATATCTGACAGAATGGCCCTCTAGTAGATGAAACGTAATGGACGTGTCTGTAGAATTGCTTTTGTCTAGATGTATCTAGAAATAGTTGCCTTGTTTGATATTTTCTTTTTCGAGTGAGTTATTTGAAATGGCAGGTCCTGGGTTTTTGATCCCACCCACATTTATTATTGACGGGCAGAGAAAAGaaccaacccactgggcacagatgtcagttcagtgtgtattccatgttggttcaacgtaatttcatcgAAACGATGTGGAAACGACGTTGATTCGACCagcgtgtgcccagtgggaacatTTTACTGTAGTTTATTGAAAACTCAAGTCAAATGCGAAGAGTACCTAAACTAGCCCCAGCTCAGTCAGAGGTGAGTAAATGTCTGCGAATTGAGGTACAGATAACATTACTACCTCTTTCATAAAATAGAACTAAAATATATGAACTTACATTGCTTCCAGTTAGTAGAAAACAGTATGTTTTCCCTcctgattaaataaagatgaGGTGAAAACGACAACGGGTCAGATGCCTGAGGGACTGTGGATTGTGTAATAAATGTTTTTATAGAGTTTCTTATTAATGTTATTAGTTGGTAGTTTTCTCTGTGGTTTTCCTGCATTTCTCTCTGGTTGTACTACAGCTTGGGTGAACACGTGGTGATGATGCATTGGACTCTGTCTGCATAGTATACGGGGTGCTGTTAGTCATACTGTGCTGACTATGTCAATTTGTACTGAATCATAAAATAAAGCTAGAAGCTGTACATGA
>XM_036947611.1
ACCTCCTATCACTCATACTGGTCATCCTCTAGGTTCGGGTTGAATGGAAATGTATTGGAGTTGGTCTCCATTTACACGTTGAAGGGTCCTTTCATGTGTCAGATCAGCGTGCTGCTGGTTTCAGTTGGTCTCCGGCGGTTCGAGCACTACGAGACAGCCAGTCCGACTGCTTTCGCCACTGTTTTATCCTAAATCAACGGGTGTGATTGACAGCTGTCAGACCTAAGTTGAGATGGACGAGCTCCAGGACGTTCAGCTGACTGAGATCAAGCCACTGCTCACAGATAAGGAGCATGACATCGAGACCTCCCATGGTGTTCTGCACGTGACGATGAGGGGCACCCCCAAGGGCAATAGACCAGTCATCCTCACCTACCATGACATTGGTCTCAACCATAAGTCCTGTTTCAACACACTGTTCAACTTTGAAGACATGCAGGAGATCACATCCCACTTCGCTGTGGTCCACGTGGACGCCCCAGGACAGCAGGAGGGTGCTCCCCCATTCCCCACAGGgtACCAGTACCCTACCATGGATGAGCTGTCTGAGATGCTGCCGTCTGTCATGACTCAGCTGAAGGTGACCAGTGTGATTGGGATTGGAGTTGGCGCTGGAGCCTACATCCTGTCCAGACTGGCTCTCAATGAGCCGGCCCTGGTCGAAGGTCTGGTCCTCATCAATGTGGACCCCTGTGCAAAGGGCTGGATGGACTGGGCTGCCTCCAAGATGTCCGGTTGGACCAGCAACCTGGTGGACATAGTGATGGCCCACCACTTCAGTGATGATGAGCTGTCTGACAACCAGGAGATCACCCAGACGTATCGGCTGCACATCGCCCAGGATATCAACCAGGAAAACCTGGCCCTCTTCTGCAATGCCTACAACAGCCGTCGGGACTTGGAGATTGAGAGGCCTGTCACCGGTCTGACTGACGACACGGTGAACACATTGACATGCACTTCTCTGCTGGTGGTTGGTGACACGTCCCCGGCTGTCGACGCAGTGGTTGAATGCAACTCGAGGTTAAATCCAACCAAAACAACCCTTCTTAAGATGCAAGACTGTGGCGGGCTTCCTCAGGTCATCCAGCCGGGTAAACTAGCGGAGGCCTTCAAATACTTTATCCAGGGAATGGGTTACATGCCCACGGCCAGTATGACCCGCCTGGTGCGTTCTCGTACCCACTCTACCTCCAGCATGGGCTCTGTGGAGGGGAGTCGCAGTCGCACCCACACACAGCTAGAGGGCGCCACTGCTGCCGGCCTGGGTGTCGAACAGGCCAGGCCACAGACCATGGAGGTTTCCTGTTAAAGAACCCAGCCCAGAAAAccaccacctcccccttcctctctgtctccctccctctcttttttcctTTCCCATGCTCAAGGTCAGAGAGGATTGGAATCCTGAGCGGGCGTCTGAAACGTGTTCTGAAAGATAATTTATGAAGACAGAAGCAGTCAGGTTCTCTGCTGTGTTCTCTCACCATTTCCTGTTGTTGTCTGTCTATCATGCCTGTCTGTGCATGACTGCTGTGGTACGGCAACCTGAAAGTCAGTAAGCAGGCGGATGATGCTGCTTgtctggttttccttttgttgtCTACCAGCTCTCCCCATTAAAAGTTGTTTTTTTAATCTTTGAGATTTGAGATATATTTGTATTTAGAACTATTTTGGGTCAGTGTGTCAGTTTAAAGATAACAGATGGAAAGGCATCAGGAGTTTTCTCTTGTAAAGTACTCTATACGGAGTAATGTtgcccctctttctgtctccctctgggGTCTTCCTCACCTTGCTAATTGGTAAGATCAGACCAAATCACACCACCCCTCCTTAGTGATCCATTCCTTAATCAGTCTCATGACACACCAGATtcttttttaattgtttttatgtTGTGATTTGTGGAAAAAAATACCATTTGCTTTCCTGGATTGCAATACGATGTGATAAACTTGCTCCTGCTCTGTACCTTTATACCAAGAATATCTGACAGAATGGCCCTCTAGTAGATGAAACGTAATGGACGTGTCTGTAGAATTGCTTTTGTCTAGATGTATCTAGAAATAGTTGCCTTGTTTGATATTTTCTTTTTCGAGTGAGTTATTTGAAATGGCAGGTCCTGGGTTTTTGATCCCACCCACATTTATTATTGACGGGCAGAGAAAAGaaccaacccactgggcacagatgtcagttcagtgtgtattccatgttggttcaacgtaatttcatcgAAACGATGTGGAAACGACGTTGATTCGACCagcgtgtgcccagtgggaacatTTTACTGTAGTTTATTGAAAACTCAAGTCAAATGCGAAGAGTACCTAAACTAGCCCCAGCTCAGTCAGAGGTGAGTAAATGTCTGCGAATTGAGGTACAGATAACATTACTACCTCTTTCATAAAATAGAACTAAAATATATGAACTTACATTGCTTCCAGTTAGTAGAAAACAGTATGTTTTCCCTcctgattaaataaagatgaGGTGAAAACGACAACGGGTCAGATGCCTGAGGGACTGTGGATTGTGTAATAAATGTTTTTATAGAGTTTCTTATTAATGTTATTAGTTGGTAGTTTTCTCTGTGGTTTTCCTGCATTTCTCTCTGGTTGTACTACAGCTTGGGTGAACACGTGGTGATGATGCATTGGACTCTGTCTGCATAGTATACGGGGTGCTGTTAGTCATACTGTGCTGACTATGTCAATTTGTACTGAATCATAAAATAAAGCTAGAAGCTGTACATGA

Function

NR:

description
protein NDRG3-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947610.1 False 2677 mRNA 0.48 14 67512498 67535761
XM_021567021.2 False 2799 mRNA 0.47 16 67512498 67571084
XM_036947611.1 True 2769 mRNA 0.47 15 67512498 67571087

Neighbor

gene id symbol gene type direction distance location
LOC110492594 LOC106566480 coding downstream 2354 67499665 ~ 67510144 (-)
LOC110492592 LOC106566478 coding downstream 19847 67471944 ~ 67492651 (-)
LOC110492588 LOC106566492 coding downstream 479453 67021935 ~ 67033045 (-)
LOC110492586 LOC106566493 coding downstream 500337 66822334 ~ 67012161 (-)
slc6a8 slc6a8 coding downstream 745462 66738326 ~ 66767036 (-)
LOC118939572 NA coding upstream 2634 67573165 ~ 67604966 (-)
LOC110491154 LOC106566473 coding upstream 37737 67608824 ~ 67772580 (-)
LOC110491155 LOC106572085 coding upstream 202183 67773270 ~ 68040541 (-)
LOC118939464 NA coding upstream 589720 68160807 ~ 68163967 (-)
LOC110492614 LOC106566471 coding upstream 598939 68170026 ~ 68176211 (-)
G1403503 NA non-coding downstream 49554 67462362 ~ 67462944 (-)
G1403504 NA non-coding downstream 51096 67460247 ~ 67461402 (-)
G1403478 NA non-coding downstream 106330 67405788 ~ 67406168 (-)
G1403477 NA non-coding downstream 106945 67405191 ~ 67405553 (-)
G1403280 NA non-coding downstream 129619 67382661 ~ 67382879 (-)
G1403507 NA non-coding upstream 302 67571389 ~ 67572065 (-)
G1403514 NA non-coding upstream 1365 67572452 ~ 67572904 (-)
G1403583 NA non-coding upstream 79017 67650104 ~ 67650362 (-)
G1403498 NA other downstream 68319 67443421 ~ 67444179 (-)
G1402707 LOC106566505 other downstream 1017831 66484901 ~ 66494667 (-)
G1402686 srpk3 other downstream 1086176 66425551 ~ 66426322 (-)
LOC110492562 LOC106568106 other downstream 1757888 65715711 ~ 65754610 (-)
G1401617 NA other downstream 1876126 65635482 ~ 65636372 (-)
LOC118939478 LOC106566484 other upstream 1220102 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 1632199 69203286 ~ 69207158 (-)
G1405016 nsfl1c other upstream 1706740 69277827 ~ 69280359 (-)
G1405172 NA other upstream 1946668 69517755 ~ 69518113 (-)
G1405917 NA other upstream 2507570 70078657 ~ 70095541 (-)

Expression


Co-expression Network