LOC118939572


Basic Information

Item Value
gene id LOC118939572
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 67573165 ~ 67604966 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036593.1
aacaagactggttactcgcatcaatgcctctgtctcgtcatttaacattcaaacagTAATGATGTGACGCTTCTGTGGATATGAAACTTGCCTGCAAGCGTTCGGGATATTCGCTAGCTACAGCAAAATAATTTGTTTAGGGAAAAGTTTGGAAACTCAAGTgaagtatagtgtatagtgttctCAGACTGTGGTTACGGGGGCCCCGGGAAAGGAAACTACTGATTGACAGTGGCTGTATCCTATGAAACGTCTGTATCGACATTCCGTCATAAATTGTAAACAATCATTCATTCAATATCGGCGGCGGAAGTTGCTACGAGTAGAACGCGGAAGCGAACTGGATTCAGATAATTACTctTCCTATACTGTGAAGTTTTTCGATGGAGTAGTCAAGACCATTAATCCAACCAAAGTAAAGCCATATAAGCTAGAGAATGTGAAGGCCCAGGAGAGAGACATAACTCAAGGTGAGCAGAGCAATGGGAAAGGTGAAGCCAAGGTGAACGGGAAAGCAGAGAGTTACAAATCCAAAAAAGGATCTTCAGACCTGGAGGAAGAAGAGAGTAGGAAAGATGAAGAGGAGAAAACGCGGAATGGCAACATTGAGAACAGTGGACAGAATGGGAACCTGAACGGCGAGGAGGGGGAGACGGGAGCAGGAGAACTAGGCCAGGAAGGTGTTGGGGAACAGACTGAAAAGCCACAAGTCAAGAAAGATGGGCTGGCTGTCCAAGCTGAAAGGAAAGATAGACAGGCTGTCCAAGCTGAAAGGGAAGATGGGAAGGTTGTCCAAGCTGAAAGGGAAGATGGGAAGGTTGTCCAAACTGAAAGGGAAGATGTGAATGTAGGTGGGGAGTGTGTGATGAGCAGTAACCAAAGgcaggaggagaaagaaagggatgTTTCTGGACAGAGTTCCCCGCTGAACTGGTACCGACCTTCTGAAGAAAGTTAACACGAACTGAGAAAGAGGATGGGTGTGTCTCTTGGACAGAGGCCACCTCCAAAGACGGAAAGGTCAGACACAAGCAAAGACAGAAGCAACTCATCCCAGTCTCAGATGCAAGTTAGATCAGATTCCGTCCCAAGCGTTAACCCCAGACCAGACAAACACCCAGGCAACCACAGAGGCCAGCATCGAAGCCCAATCAGAGATAGTGTATAGAGTCATCAAAAACCAGCCACTTCCAATCCTCTCCATTCAACTGGACCACATCCCCTTCAAGTGCAAAGCTCCTGGCTGCCTGAAGTCCTTCCGGAAGACCTCTCTCCTGCACTACCACACGCCTCCGAACACGCCTCTGAGTACAGCGTGCAGACCCGGGCATCAGAGAAGGAGGTTGGCTTTCAGGAGACGCCTAGGAGGAGAAGAACCATGTCAGGCTCTAGACACTCACCCCTGGGTGACAGACAGGCTGCCATCTGAGTTAACCGTCATCGTTGGAGATCACTGAGTGAGAGAAGGAAGTAGAACCAGCAAACAAACAGCGAACCCCAATGCTGAAAGAGAATATGGCGTCAGTGAAACAGTGTTGGAGAGTAGGCTGGACTACACAGGGGAACTGGATCCTCCTGACCCGTTGACCCGATTGCCTCAGCTCAAACATCTCATCAGACAGATGGTCAGAGACCTGGGCACCGTGCATCAGATGTCCCTCTGCTCCTCCAACACATGAGTGCGCCACTGAGTTCATCACTTCACCACAGAGACCTGGCTGGAGCATGGCGTAGCAAGCAAGACTACAGTACAAATGATGGGTAGGGGAGTAACACAAACTGTCATTAATCAGTTATTATACTAGCAAAactattgtaatcagattacagatccTTTTGAAAAACTAcattacttcttggattacttttaatatcagaaaaaaaatacattatgacaCCTTTTCAGTTTTCTTAATGACAGTCAATtcagcattttttttaaaaaggcgcaagtttaagtttgttccaacTGAGCAAGTCTGACcggatgtcagagaccactatgatgacacaccaaatgatgaccaccaatcagagaccactatgatg
>XR_005036594.1
aacaagactggttactcgcatcaatgcctctgtctcgtcatttaacattcaaacagTAATGATGTGACGCTTCTGTGGATATGAAACTTGCCTGCAAGCGTTCGGGATATTCGCTAGCTACAGCAAAATAATTTGTTTAGGGAAAAGTTTGGAAACTCAAGTgaagtatagtgtatagtgttctCAGACTGTGGTTACGGGGGCCCCGGGAAAGGAAACTACTGATTGACAGTGGCTGTATCCTATGAAACGTCTGTATCGACATTCCGTCATAAATTctTCCTATACTGTGAAGTTTTTCGATGGAGTAGTCAAGACCATTAATCCAACCAAAGTAAAGCCATATAAGCTAGAGAATGTGAAGGCCCAGGAGAGAGACATAACTCAAGGTGAGCAGAGCAATGGGAAAGGTGAAGCCAAGGTGAACGGGAAAGCAGAGAGTTACAAATCCAAAAAAGGATCTTCAGACCTGGAGGAAGAAGAGAGTAGGAAAGATGAAGAGGAGAAAACGCGGAATGGCAACATTGAGAACAGTGGACAGAATGGGAACCTGAACGGCGAGGAGGGGGAGACGGGAGCAGGAGAACTAGGCCAGGAAGGTGTTGGGGAACAGACTGAAAAGCCACAAGTCAAGAAAGATGGGCTGGCTGTCCAAGCTGAAAGGAAAGATAGACAGGCTGTCCAAGCTGAAAGGGAAGATGGGAAGGTTGTCCAAGCTGAAAGGGAAGATGGGAAGGTTGTCCAAACTGAAAGGGAAGATGTGAATGTAGGTGGGGAGTGTGTGATGAGCAGTAACCAAAGgcaggaggagaaagaaagggatgTTTCTGGACAGAGTTCCCCGCTGAACTGGTACCGACCTTCTGAAGAAAGTTAACACGAACTGAGAAAGAGGATGGGTGTGTCTCTTGGACAGAGGCCACCTCCAAAGACGGAAAGGTCAGACACAAGCAAAGACAGAAGCAACTCATCCCAGTCTCAGATGCAAGTTAGATCAGATTCCGTCCCAAGCGTTAACCCCAGACCAGACAAACACCCAGGCAACCACAGAGGCCAGCATCGAAGCCCAATCAGAGATAGTGTATAGAGTCATCAAAAACCAGCCACTTCCAATCCTCTCCATTCAACTGGACCACATCCCCTTCAAGTGCAAAGCTCCTGGCTGCCTGAAGTCCTTCCGGAAGACCTCTCTCCTGCACTACCACACGCCTCCGAACACGCCTCTGAGTACAGCGTGCAGACCCGGGCATCAGAGAAGGAGGTTGGCTTTCAGGAGACGCCTAGGAGGAGAAGAACCATGTCAGGCTCTAGACACTCACCCCTGGGTGACAGACAGGCTGCCATCTGAGTTAACCGTCATCGTTGGAGATCACTGAGTGAGAGAAGGAAGTAGAACCAGCAAACAAACAGCGAACCCCAATGCTGAAAGAGAATATGGCGTCAGTGAAACAGTGTTGGAGAGTAGGCTGGACTACACAGGGGAACTGGATCCTCCTGACCCGTTGACCCGATTGCCTCAGCTCAAACATCTCATCAGACAGATGGTCAGAGACCTGGGCACCGTGCATCAGATGTCCCTCTGCTCCTCCAACACATGAGTGCGCCACTGAGTTCATCACTTCACCACAGAGACCTGGCTGGAGCATGGCGTAGCAAGCAAGACTACAGTACAAATGATGGGTAGGGGAGTAACACAAACTGTCATTAATCAGTTATTATACTAGCAAAactattgtaatcagattacagatccTTTTGAAAAACTAcattacttcttggattacttttaatatcagaaaaaaaatacattatgacaCCTTTTCAGTTTTCTTAATGACAGTCAATtcagcattttttttaaaaaggcgcaagtttaagtttgttccaacTGAGCAAGTCTGACcggatgtcagagaccactatgatgacacaccaaatgatgaccaccaatcagagaccactatgatg
>XR_005036595.1
aacaagactggttactcgcatcaatgcctctgtctcgtcatttaacattcaaacagTAATGATGTGACGCTTCTGTGGATATGAAACTTGCCTGCAAGCGTTCGGGATATTCGCTAGCTACAGCAAAATAATTTGTTTAGGGAAAAGTTTGGAAACTCAAGTgaagtatagtgtatagtgttctCAGACTGTGGTTACGGGGGCCCCGGGAAAGGAAACTACTGATTGACAGTGGCTGTATCCTATGAAACGTCTGTATCGACATTCCGTCATAAATTGTAAACAATCATTCATTCAATATCGGCGGCGGAAGTTGCTACGAGTAGAACGCGGAAGCGAACTGGATTCAGATAATTACTctTCCTATACTGTGAAGTTTTTCGATGGAGTAGTCAAGACCATTAATCCAACCAAAGTAAAGCCATATAAGCTAGAGAATGTGAAGGCCCAGGAGAGAGACATAACTCAAGGTGAGCAGAGCAATGGGAAAGGTGAAGCCAAGGTGAACGGGAAAGCAGAGAGTTACAAATCCAAAAAAGGATCTTCAGACCTGGAGGAAGAAGAGAGTAGGAAAGATGAAGAGGAGAAAACGCGGAATGGCAACATTGAGAACAGTGGACAGAATGGGAACCTGAACGGCGAGGAGGGGGAGACGGGAGCAGGAGAACTAGGCCAGGAAGGTGTTGGGGAACAGACTGAAAAGCCACAAGTCAAGAAAGATGGGCTGGCTGTCCAAGCTGAAAGGAAAGATAGACAGGCTGTCCAAGCTGAAAGGGAAGATGGGAAGGTTGTCCAAGCTGAAAGGGAAGATGGGAAGGTTGTCCAAACTGAAAGGGAAGATGTGAATGTAGGTGGGGAGTGTGTGATGAGCAGTAACCAAAGgcaggaggagaaagaaagggatgTTTCTGGACAGAGTTCCCCGCTGAACTGGTACCGACCTTCTGAAGAAAGTTAACACGAACTGAGAAAGAGGATGGGTGTGTCTCTTGGACAGAGGCCACCTCCAAAGACGGAAAGGTCAGACACAAGCAAAGAAGCAACTCATCCCAGTCTCAGATGCAAGTTAGATCAGATTCCGTCCCAAGCGTTAACCCCAGACCAGACAAACACCCAGGCAACCACAGAGGCCAGCATCGAAGCCCAATCAGAGATAGTGTATAGAGTCATCAAAAACCAGCCACTTCCAATCCTCTCCATTCAACTGGACCACATCCCCTTCAAGTGCAAAGCTCCTGGCTGCCTGAAGTCCTTCCGGAAGACCTCTCTCCTGCACTACCACACGCCTCCGAACACGCCTCTGAGTACAGCGTGCAGACCCGGGCATCAGAGAAGGAGGTTGGCTTTCAGGAGACGCCTAGGAGGAGAAGAACCATGTCAGGCTCTAGACACTCACCCCTGGGTGACAGACAGGCTGCCATCTGAGTTAACCGTCATCGTTGGAGATCACTGAGTGAGAGAAGGAAGTAGAACCAGCAAACAAACAGCGAACCCCAATGCTGAAAGAGAATATGGCGTCAGTGAAACAGTGTTGGAGAGTAGGCTGGACTACACAGGGGAACTGGATCCTCCTGACCCGTTGACCCGATTGCCTCAGCTCAAACATCTCATCAGACAGATGGTCAGAGACCTGGGCACCGTGCATCAGATGTCCCTCTGCTCCTCCAACACATGAGTGCGCCACTGAGTTCATCACTTCACCACAGAGACCTGGCTGGAGCATGGCGTAGCAAGCAAGACTACAGTACAAATGATGGGTAGGGGAGTAACACAAACTGTCATTAATCAGTTATTATACTAGCAAAactattgtaatcagattacagatccTTTTGAAAAACTAcattacttcttggattacttttaatatcagaaaaaaaatacattatgacaCCTTTTCAGTTTTCTTAATGACAGTCAATtcagcattttttttaaaaaggcgcaagtttaagtttgttccaacTGAGCAAGTCTGACcggatgtcagagaccactatgatgacacaccaaatgatgaccaccaatcagagaccactatgatg
>XM_036947612.1
aacaagactggttactcgcatcaatgcctctgtctcgtcatttaacattcaaacagTAATGATGTGACGCTTCTGTGGATATGAAACTTGCCTGCAAGCGTTCGGGATATTCGCTAGCTACAGCAAAATAATTTGTTTAGGGAAAAGTTTGGAAACTCAAGTgaagtatagtgtatagtgttctCAGACTGTGGTTACGGGGGCCCCGGGAAAGGAAACTACTGATTGACAGTGGCTGTATCCTATGAAACGTCTGTATCGACATTCCGTCATAAATTGTAAACAATCATTCATTCAATATCGGCGGCGGAAGTTGCTACGAGTAGAACGCGGAAGCGAACTGGATTCAGATAATTACTctTCCTATACTGTGAAGTTTTTCGATGGAGTAGTCAAGACCATTAATCCAACCAAAGTAAAGCCATATAAGCTAGAGAATGTGAAGGCCCAGGAGAGAGACATAACTCAAGGTGAGCAGAGCAATGGGAAAGGTGAAGCCAAGGTGAACGGGAAAGCAGAGAGTTACAAATCCAAAAAAGGATCTTCAGACCTGGAGGAAGAAGAGAGTAGGAAAGATGAAGAGGAGAAAACGCGGAATGGCAACATTGAGAACAGTGGACAGAATGGGAACCTGAACGGCGAGGAGGGGGAGACGGGAGCAGGAGAACTAGGCCAGGAAGGTGTTGGGGAACAGACTGAAAAGCCACAAGTCAAGAAAGATGGGCTGGCTGTCCAAGCTGAAAGGAAAGATAGACAGGCTGTCCAAGCTGAAAGGGAAGATGGGAAGGTTGTCCAAGCTGAAAGGGAAGATGGGAAGGTTGTCCAAACTGAAAGGGAAGATGTGAATGTAGGTGGGGAGTGTGTGATGAGCAGTAACCAAAGgcaggaggagaaagaaagggatgTTTCTGGACAGAGTTCCCCGCTGAACTGGTACCGACCTTCTGAAGAAAGTTAACACGAACTGAGAAAGAGGATGGGTGTGTCTCTTGGACAGAGGCCACCTCCAAAGACGGAAAGGTCAGACACAAGCAAAGACAGAAGCAACTCATCCCAGTCTCAGATGCAAGTTAGATCAGATTCCGTCCCAAGCGTTAACCCCAGACCAGACAAACACCCAGGCAACCACAGAGGCCAGCATCGAAGCCCAATCAGAGATAGTGTATAGAGTCATCAAAAACCAGCCACTTCCAATCCTCTCCATTCAACTGGACCACATCCCCTTCAAGTGCAAAGCTCCTGGCTGCCTGAAGTCCTTCCGGAAGACCTCTCTCCTGCACTACCACACGCCTCCGAACACGCCTCTGAGTACAGCGTGCAGACCCGGGCATCAGAGAAGGAGGTTGGCTTTCAGGAGACGCCTAGGAGGAGAAGAACCATGTCAGGCTCTAGACGTGAGTAGTGTCACTCCAGCCCAGGGATCACCTGAGCTAAACCCAACCTCTCTGTCACATTATTATCTGGACCAGTTGTTGTATACAGCCGGTGCTGTTATATCCATGCATGgacaataaatcaatcaaatccGAATGAAATCTTCTATTGCAAT
>TU1602820
GAGAGAAGGAAGTAGAACCAGCAAACAAACAGCGAACCCCAATGCTGAAAGAGAATATGGCGTCAGTGAAACAGTGTTGGAGAGTAGGCTGGACTACACAGGGGAACTGGATCCTCCTGACCCGTTGACCCGATTGCCTCAGCTCAAACATCTCATCAGACAGATGGTCAGAGACCTGGGCACCGTGCATCAGATGTCCCTCTGCTCCTCCAACACATGAGTGCGCCACTGAGTTCATCACTTCACCACAGAGACCTGGCTGGAGCATGGCGTAGCAAGCAAGACTACAGTACAAATGATGGGTAGGGGAGTAACACAAACTGTCATTAATCAGTTATTATACTAGCAAAactattgtaatcagattacagatccTTTTGAAAAACTAcattacttcttggattacttttaatatcagaaaaaaaatacattatgacaCCTTTTCAGTTTTCTTAATGACAGTCAATtcagcattttttttaaaaaggcgcaagtttaagtttgttccaacTGAGCAAGTCTGACcggatgtcagagaccactatgatgacacaccaaatgatgaccaccaatcagagaccactatgatgacacaccaaatgcatttgatggatcTTTTTCTGTCTTCTgtccaaaagtaactgaaagtaatcagattgaTAACGAGTTGTgataatccaaaagttacgtaaCTGATTACAATTGTGGACaggtaactgtaacggattacattgtTGAAGGTAACATATAGTCCACAACCCTGTGTGTGGGTGACAGGGACTGAGACGTTAACAGGGGATTCCTGAGATACCTGGTACTACTGACAATTCAGGAATCAACCATATGAAATGTCTGGCAACCTGCATTCCTGCCATGGTGATGAAGGATGGATAGGACAGGCTACTTTTCTGAAATGCAAGAAAAATAAGAACAGAACATAACCgtgttttacacttttttagtttagtttttattaatttgaccatttaaaaaacaaaaacaagcacacataaaacttaaAAGCCATACATGAAACTTAGGTTTTCGATTGTAAGTCAACCCCTCCTAATAATATAGTTCTTGCAATTAATTGTAAAACATGGTGAATACTTTGTTTTTGCTAACATAAATAATCTATATCCAACA

Function

NR:

description
PREDICTED: PHD finger protein 20

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036593.1 False 2049 mRNA 0.47 8 67573721 67604966
XR_005036594.1 False 1968 mRNA 0.47 8 67573721 67604966
XR_005036595.1 False 2045 mRNA 0.47 8 67573721 67604966
XM_036947612.1 False 1549 mRNA 0.48 6 67598602 67604966
TU1602820 True 1146 lncRNA 0.39 2 67573165 67598519

Neighbor

gene id symbol gene type direction distance location
LOC110492595 LOC106566479 coding downstream 2634 67512498 ~ 67571087 (-)
LOC110492594 LOC106566480 coding downstream 63577 67499665 ~ 67510144 (-)
LOC110492592 LOC106566478 coding downstream 81070 67471944 ~ 67492651 (-)
LOC110492588 LOC106566492 coding downstream 540676 67021935 ~ 67033045 (-)
LOC110492586 LOC106566493 coding downstream 561560 66822334 ~ 67012161 (-)
LOC110491154 LOC106566473 coding upstream 3858 67608824 ~ 67772580 (-)
LOC110491155 LOC106572085 coding upstream 168304 67773270 ~ 68040541 (-)
LOC118939464 NA coding upstream 555841 68160807 ~ 68163967 (-)
LOC110492614 LOC106566471 coding upstream 565060 68170026 ~ 68176211 (-)
id1 id1 coding upstream 578259 68183225 ~ 68184419 (-)
G1403514 NA non-coding downstream 817 67572452 ~ 67572904 (-)
G1403507 NA non-coding downstream 1656 67571389 ~ 67572065 (-)
G1403535 NA non-coding downstream 48905 67524490 ~ 67524816 (-)
G1403527 NA non-coding downstream 53807 67508359 ~ 67519914 (-)
G1403503 NA non-coding downstream 110777 67462362 ~ 67462944 (-)
G1403583 NA non-coding upstream 45138 67650104 ~ 67650362 (-)
G1403587 NA non-coding upstream 50742 67655708 ~ 67656033 (-)
G1403588 NA non-coding upstream 51370 67656336 ~ 67656555 (-)
G1403590 NA non-coding upstream 52945 67657911 ~ 67658134 (-)
G1403498 NA other downstream 129542 67443421 ~ 67444179 (-)
G1402707 LOC106566505 other downstream 1079054 66484901 ~ 66494667 (-)
G1402686 srpk3 other downstream 1147399 66425551 ~ 66426322 (-)
LOC110492562 LOC106568106 other downstream 1819111 65715711 ~ 65754610 (-)
G1401617 NA other downstream 1937349 65635482 ~ 65636372 (-)
LOC118939478 LOC106566484 other upstream 1186223 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 1598320 69203286 ~ 69207158 (-)
G1405016 nsfl1c other upstream 1672861 69277827 ~ 69280359 (-)
G1405172 NA other upstream 1912789 69517755 ~ 69518113 (-)
G1405917 NA other upstream 2473691 70078657 ~ 70095541 (-)

Expression


Co-expression Network