LOC110492616 (LOC106566469)


Basic Information

Item Value
gene id LOC110492616
gene name LOC106566469
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68249045 ~ 68265361 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947641.1
AGTGAACTAACAAGGAAGAGGCTTGTCAATTGCCAGAGTTAGGAAACGTGGCCTTAGCAAAGGAGAATCCAACATTAATAGAAACAAGCTGTTTTGATAGGCGGCAAATAGCGTACACGACTCGGTTGGGTTGGTGAACAACTTGCAAACATGGCCGATATTAATCAAGGATCGGTCTTACCTAGCGAAACTTCACCTCCAGCTCTGGACGGACTGAATGCAACCGACTCCAATGGTACCGACGCTGTCAACGCAACAGTGGCCAAGTTTGTGGCGACACCGGAGGGAACAGCACTGGCATATGGCAGCCTTGTGTTCATGGCTCTGTTGCCCATCTTCTTCGGTGCGCTGCGGTCCGTCAGCTGCGGCAAAAGCAAGGTTGCTGGAGAAAATGGTTGTGATTATGAGTACAGAAACTCCTCAGACATGCCAGAGACCATCACAGGCAGAGATGCTGCACGGTTCCCCATCATTGCCAGCTGCACCCTTTTCGGCCTCTATCTCTTCTTCAAAATTTTCTCTCAAGAGTACATCAACTTGCTGCTATCAATGTATTTCTTTGTCCTGGGGATTTTGGCACTGGCTCATACAATGAGTCCTTTCATGAACAGGATCTTCCCTGCCAACATCCCCATCAAGCAGTACCAGCTGCTCTTCACTCAGGGCTCGGGAGAGACCAAAGAAGAGATGGTCAACTATGAGTTTGACACCAAGGACATGATCTGCCTGGTCATCAGCACTGTGGTTGGGGTCTGGTACATCCTCAAGAAGCACTGGATTGCCAACAACCTCTTTGGCCTGGCGTTCGCACTGAATGGGGTGGAGCTTCTGCACCTGAACAACATCAGTACTGGCTGTATCCTGCTGGGGGGGCTGTTTGTGTATGATGTCTTCTGGGTATTTGGCACCAATGTCATGGTTACTGTGGCCAAGTCGTTCGAGGCACCCATTAAGTTGGTGTTTCCCCAGGACCTGCTGGAGAAGGGTCTGGGTGCCAGTCAATTTGCAATGCTGGGGCTGGGAGATATTGTCATTCCAGGTATCTTCATTGCTTTACTTCTCCGCTTTGATGTCAGTCTAAAGAAGAACACCAGGACCTACTTCCACACCAGCTTCCTGGCCTACATCTTTGGCTTGGGCCTGACCATCTGGGTCATGCACACCTTTAAACACGCCCAGcCTGCCTTGCTGTACCTGGTCCCAGCCTGTATTGGATTCCCATTGGTTGTAGCTCTGTTGAAAGGAGAACTGACTGAGATGTTCAGGTACGAGGAAGTGTCTGCGGAAGATATTGCTGCTAAAGAAGGGACTACACAGGTTGAGAAAAAAGACAAATGACGACCGAGTTCCTACCAGGTTGTCCGTCACTCTCTGGTACCACGTTCACAGCAGCCCTCCTGTCTATACACATCCTAGGAGGGTGTTCATGTTTCCCTGGAGTTGTGTGCTGTACAAGGAAGtggatgatttaaaaaaaaattaaataactgTTATAACATTGGGAAATGTTGTAGTTTAAGTGTTTGTAAAAGAGCTTTTTGGTGCCTATGTTTTCgttcttgttttgtatttctttcccTTTTGCATTCTCatatttcttgtttttatttcatttgattCGCCAGTATTTTAAACTCAtatgttttactttttttttatttttgggtgaATCTGAGATCActggaagctgaacatttttTAGAAATTGCTCTCGGGATACTCAGATAACAGCGGTCAAGTTTGGTGGTTTAGTTTGTTTCTGTCTTGGTTTGCTAAAGGAATCCCTTCCTCATCGAGAATGAAACATCATTGGACGATGTAAAGGAGGCTGGATATGAGTCTACAATTGTCACACACATGCTTTAGAAGGAGCTTCATCTTTACTACTGTCCTCTGGCCTGGAAGTAGGCCTAAATACCTACCATTCTCAAGGTATAATTGCACCAATTTGGTAGTGCATGTAATTACATGCCGCCTGACTTGTTGGCCAGTGTAAAGGTAATAATAGCTTAGAATTCAGATCAGCGTATTTAAGGAAGTAACTAAACTTGTGCAATCATGATATCACATTTTGATATTTGCTATGACACAATGAGATTTCTGAGAGTCTTACTCTGTCATGCTCAGTCATATCCAATCAGAAGAGTCTGTTATATGGAAATAATGTATTAGTATAGGAGTTGGTTACGTCCCGTGCAGTGACTGAGCGGTACCTGCAGATGGAGACCGTGTCGACAGAACCATATCTCCTCGGAGAGAGGAGACCCAGGGGATCAAATGATTCCTCTTGCTTTAGGTTGGGGTTGTTTTGCTTTGATTATGTAGAAGTTCTGTCCTTTTGCAGAACGGAGCCGTGTGTTTCAGCCCGGGGGGGTTGTGTTAGGGATTTAAGATTGAGCAGTTCTGTAGTAATGTGTTTAGGTGAAGTTCAGTAACCCTGCTATCAtttcaaatatacattttcttttCTCCTATTCTACTTGTGTAATTCAAAGTTTATTATGAGCCTttgtttattttcaataaatgatGGTGTATATCACCGTAGAGAAGCATAACCAATGTGTAGGTCTTTAGTTTTGTGTTGAAGTAGCCACCCACACATGGGTTTTTCTGGTTATTTAGAATAAATTCTACAGGGAAGTGCATTCTGGGCTGTAGGAGGGATGGCGCGGAGAGCACATCTGATGGACCACTCGAGGGAGATTAGGATGTTACAGCGCAGAAAGcatttagaccccttgacctaTTAAAATAAAAACCTCTA
>XM_036947643.1
TGAAACGATATTGACAAGTGAACTAACAAGGAAGAGGCTTGTCAATTGCCAGAGTTAGGAAACGTGGCCTTAGCAAAGGAGAATCCAACATTAATAGAAACAAGCTGTTTTGATAGGCGGCAAATAGCGTACACGACTCGGTTGGGTTGGTGAACAACTTGCAAACATGGCCGATATTAATCAAGGATCGGTCTTACCTAGCGAAACTTCACCTCCAGCTCTGGACGGACTGAATGCAACCGACTCCAATGGTACCGACGCTGTCAACGCAACAGTGGCCAAGTTTGTGGCGACACCGGAGGGAACAGCACTGGCATATGGCAGCCTTGTGTTCATGGCTCTGTTGCCCATCTTCTTCGGTGCGCTGCGGTCCGTCAGCTGCGGCAAAAGCAAGAACTCCTCAGACATGCCAGAGACCATCACAGGCAGAGATGCTGCACGGTTCCCCATCATTGCCAGCTGCACCCTTTTCGGCCTCTATCTCTTCTTCAAAATTTTCTCTCAAGAGTACATCAACTTGCTGCTATCAATGTATTTCTTTGTCCTGGGGATTTTGGCACTGGCTCATACAATGAGTCCTTTCATGAACAGGATCTTCCCTGCCAACATCCCCATCAAGCAGTACCAGCTGCTCTTCACTCAGGGCTCGGGAGAGACCAAAGAAGAGATGGTCAACTATGAGTTTGACACCAAGGACATGATCTGCCTGGTCATCAGCACTGTGGTTGGGGTCTGGTACATCCTCAAGAAGCACTGGATTGCCAACAACCTCTTTGGCCTGGCGTTCGCACTGAATGGGGTGGAGCTTCTGCACCTGAACAACATCAGTACTGGCTGTATCCTGCTGGGGGGGCTGTTTGTGTATGATGTCTTCTGGGTATTTGGCACCAATGTCATGGTTACTGTGGCCAAGTCGTTCGAGGCACCCATTAAGTTGGTGTTTCCCCAGGACCTGCTGGAGAAGGGTCTGGGTGCCAGTCAATTTGCAATGCTGGGGCTGGGAGATATTGTCATTCCAGGTATCTTCATTGCTTTACTTCTCCGCTTTGATGTCAGTCTAAAGAAGAACACCAGGACCTACTTCCACACCAGCTTCCTGGCCTACATCTTTGGCTTGGGCCTGACCATCTGGGTCATGCACACCTTTAAACACGCCCAGcCTGCCTTGCTGTACCTGGTCCCAGCCTGTATTGGATTCCCATTGGTTGTAGCTCTGTTGAAAGGAGAACTGACTGAGATGTTCAGGTACGAGGAAGTGTCTGCGGAAGATATTGCTGCTAAAGAAGGGACTACACAGGTTGAGAAAAAAGACAAATGACGACCGAGTTCCTACCAGGTTGTCCGTCACTCTCTGGTACCACGTTCACAGCAGCCCTCCTGTCTATACACATCCTAGGAGGGTGTTCATGTTTCCCTGGAGTTGTGTGCTGTACAAGGAAGtggatgatttaaaaaaaaattaaataactgTTATAACATTGGGAAATGTTGTAGTTTAAGTGTTTGTAAAAGAGCTTTTTGGTGCCTATGTTTTCgttcttgttttgtatttctttcccTTTTGCATTCTCatatttcttgtttttatttcatttgattCGCCAGTATTTTAAACTCAtatgttttactttttttttatttttgggtgaATCTGAGATCActggaagctgaacatttttTAGAAATTGCTCTCGGGATACTCAGATAACAGCGGTCAAGTTTGGTGGTTTAGTTTGTTTCTGTCTTGGTTTGCTAAAGGAATCCCTTCCTCATCGAGAATGAAACATCATTGGACGATGTAAAGGAGGCTGGATATGAGTCTACAATTGTCACACACATGCTTTAGAAGGAGCTTCATCTTTACTACTGTCCTCTGGCCTGGAAGTAGGCCTAAATACCTACCATTCTCAAGGTATAATTGCACCAATTTGGTAGTGCATGTAATTACATGCCGCCTGACTTGTTGGCCAGTGTAAAGGTAATAATAGCTTAGAATTCAGATCAGCGTATTTAAGGAAGTAACTAAACTTGTGCAATCATGATATCACATTTTGATATTTGCTATGACACAATGAGATTTCTGAGAGTCTTACTCTGTCATGCTCAGTCATATCCAATCAGAAGAGTCTGTTATATGGAAATAATGTATTAGTATAGGAGTTGGTTACGTCCCGTGCAGTGACTGAGCGGTACCTGCAGATGGAGACCGTGTCGACAGAACCATATCTCCTCGGAGAGAGGAGACCCAGGGGATCAAATGATTCCTCTTGCTTTAGGTTGGGGTTGTTTTGCTTTGATTATGTAGAAGTTCTGTCCTTTTGCAGAACGGAGCCGTGTGTTTCAGCCCGGGGGGGTTGTGTTAGGGATTTAAGATTGAGCAGTTCTGTAGTAATGTGTTTAGGTGAAGTTCAGTAACCCTGCTATCAtttcaaatatacattttcttttCTCCTATTCTACTTGTGTAATTCAAAGTTTATTATGAGCCTttgtttattttcaataaatgatGGTGTATATCACCGTAGAGAAGCATAACCAATGTGTAGGTCTTTAGTTTTGTGTTGAAGTAGCCACCCACACATGGGTTTTTCTGGTTATTTAGAATAAATTCTACAGGGAAGTGCATTCTGGGCTGTAGGAGGGATGGCGCGGAGAGCACATCTGATGGACCACTCGAGGGAGATTAGGATGTTACAGCGCAGAAAGcatttagaccccttgacctaTTAAAATAAAAACCTCTA

Function

NR:

description
minor histocompatibility antigen H13-like isoform X2

GO: NA

KEGG:

id description
K09595 HM13; minor histocompatibility antigen H13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947641.1 False 2767 mRNA 0.45 13 68249045 68265345
XM_036947643.1 True 2747 mRNA 0.45 12 68249045 68265361

Neighbor

gene id symbol gene type direction distance location
id1 id1 coding downstream 64626 68183225 ~ 68184419 (-)
LOC110492614 LOC106566471 coding downstream 72834 68170026 ~ 68176211 (-)
LOC118939464 NA coding downstream 85078 68160807 ~ 68163967 (-)
LOC110491155 LOC106572085 coding downstream 208504 67773270 ~ 68040541 (-)
LOC110491154 LOC106566473 coding downstream 476465 67608824 ~ 67772580 (-)
LOC110492615 LOC106566468 coding upstream 76 68265437 ~ 68272147 (-)
LOC110492618 LOC106566485 coding upstream 13993 68279354 ~ 68336936 (-)
LOC110492621 LOC106566464 coding upstream 97813 68363174 ~ 68367397 (-)
LOC110491166 NA coding upstream 104634 68369995 ~ 68383908 (-)
LOC110491167 LOC106566462 coding upstream 178922 68444283 ~ 68620213 (-)
G1404061 NA non-coding downstream 32797 68216018 ~ 68216248 (-)
G1404059 NA non-coding downstream 34939 68213291 ~ 68214106 (-)
G1404035 NA non-coding downstream 58783 68190025 ~ 68190262 (-)
G1404031 NA non-coding downstream 63405 68185359 ~ 68185640 (-)
G1404017 NA non-coding downstream 94578 68154260 ~ 68154467 (-)
G1404348 NA non-coding upstream 16631 68281992 ~ 68335689 (-)
G1404367 NA non-coding upstream 60370 68325731 ~ 68326012 (-)
G1404368 NA non-coding upstream 62285 68327646 ~ 68327903 (-)
G1404373 NA non-coding upstream 69180 68334541 ~ 68334953 (-)
G1404385 NA non-coding upstream 94012 68359373 ~ 68359652 (-)
G1403498 NA other downstream 804866 67443421 ~ 67444179 (-)
G1402707 LOC106566505 other downstream 1754378 66484901 ~ 66494667 (-)
G1402686 srpk3 other downstream 1822723 66425551 ~ 66426322 (-)
LOC110492562 LOC106568106 other downstream 2494435 65715711 ~ 65754610 (-)
G1401617 NA other downstream 2612673 65635482 ~ 65636372 (-)
LOC118939478 LOC106566484 other upstream 525828 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 937925 69203286 ~ 69207158 (-)
G1405016 nsfl1c other upstream 1012466 69277827 ~ 69280359 (-)
G1405172 NA other upstream 1252394 69517755 ~ 69518113 (-)
G1405917 NA other upstream 1813296 70078657 ~ 70095541 (-)

Expression


Co-expression Network