LOC110492615 (LOC106566468)


Basic Information

Item Value
gene id LOC110492615
gene name LOC106566468
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68265437 ~ 68272147 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036608.1
GGACATCACCTGACAGGAAGATGTGTTAAAGGCGTGGTGAAAACTGATACCTGACCTACACCCAGCCGCAGCCAGACGGGACTTTTGTCAAGGTGTTTAAAGATTAGTTTAATTCAACACCGTGTACCTGGAACTCACCAAGTTCTCTTCAAACAAGCAAGCAGCTCAGTCATGACttgctactctcctctcctcctccctctccttctccttggtATTTTTGGGCTATGTTCAAGCTTCAAGATCTGTGCCTTCAATGTCCAGAACTTCGACGACGCCAAATCAGCCAACTTCAGGGTGATGCACACTCTGACCAGGATTGTGTCTCGCTGTGACATCTGTCTCCTTCAGGAGGTTAAAGGCACACAGGGCAATGCCATGAAAGCTTTGGTGGAAGCACTCAACAGATATGATGCCTATCACTATAAATATGTTGCCAGTGGAGTTCTGGGGCGAACACCTCAGGACCAGGAGCAATACGTCTATCTGTACAGGAATGAAACCGTAGAGTTGACGGCTCAGTACCAGTACGTTGACAGAAAGGAGGGGAACGCGGCTGTTTTCTCCAGAGACCCCTTTGTTGTTAGATTTCAAGCCAAGGAAACAGTGATTGGAGACTTTTCTCTGATCCCTCTGCACACTATGGCCTCTGATGCAATCAAGGAGATTGACAAGCTCTACGATGTTTTTGAGGAAATCAAAATGAAGTGGAATACTGAGAACGTGATGTTCCTTGGAGCCTTCAATGCTGGTTGTGGGCACATGACCCGCCAGGACAAGGCGAACATCCGACTTTTCTCAATACCTGGATTTTTCTGGTTGATCAGGGACCAGGTGGACACCACTGTTGGGGATACTACCAGCTGTGCCTATGACAGGATTGTGGTACACGGAGAGCGCTTCCTGAAGACCATCAAACCTTATTCAGCTCAGGTCTTCAACATTGCCAATGAGTATAAACTCTCAAAGGAAAGGGTTCTGGAAGTGAGTGACCACTTCCCTATTGAGGTGGAGCTGAAGACTAAATCGTCAGGGCAGCTTCAAGCTCCGGTTCAGCCTCTCCTGCTAATTGCTCTCTCTGTCATCACCTCCGCCCTGCACATCTTACCTTCAACCAGTATGGTGTGAGGAGGACTGATGTTCTTCTCCAGAGTATGGATCTTTGAATTAGAATGAATTTTACATTTCTATGGTATTTGACGTATAATATCTTGAATGGAAGGCTACAGATTCCCGACGCCACCACTTCTGCATTTAGTAAcatctattttgtaaattaaTGGTTGTAATATTTCTAATTCAATTAGGTTTTTAATGTGATGTGGTTTTTACATTGTCACTGTAAATGTTCAATGCATGTATTGTACACAGTATTTGAATAAAACGAAATTGATTTTAAAACAAA
>XM_021567043.2
GGACATCACCTGACAGGAAGATGTGTTAAAGGCGTGGTGAAAACTGATACCTGACCTACACCCAGCCGCAGCCAGACGGGACTTTTGTCAAGGTGTTTAAAGATTAGTTTAATTCAACACCGTGTACCTGGAACTCACCAAGTTCTCTTCAAACAAGCAAGCAGCTCAGTCATGACttgctactctcctctcctcctccctctccttctccttggtATTTTTGGGCTATGTTCAAGCTTCAAGATCTGTGCCTTCAATGTCCAGAACTTCGACGACGCCAAATCAGCCAACTTCAGGGTGATGCACACTCTGACCAGGATTGTGTCTCGCTGTGACATCTGTCTCCTTCAGGAGGTTAAAGGCACACAGGGCAATGCCATGAAAGCTTTGGTGGAAGCACTCAACAGATATGATGCCTATCACTATAAATATGTTGCCAGTGGAGTTCTGGGGCGAACACCTCAGGACCAGGAGCAATACGTCTATCTGTACAGGAATGAAACCGTAGAGTTGACGGCTCAGTACCAGTACGTTGACAGAAAGGAGGGGAACGCGGCTGTTTTCTCCAGAGACCCCTTTGTTGTTAGATTTCAAGCCAAGGAAACAGTGATTGGAGACTTTTCTCTGATCCCTCTGCACACTATGGCCTCTGATGCAATCAAGGAGATTGACAAGCTCTACGATGTTTTTGAGGAAATCAAAATGAAGTGGAATACTGAGAACGTGATGTTCCTTGGAGCCTTCAATGCTGGTTGTGGGCACATGACCCGCCAGGACAAGGCGAACATCCGACTTTTCTCAATACCTGGATTTTTCTGGTTGATCAGGGACCAGGTGGACACCACTGTTGGGGATACTACCAGCTGTGCCTATGACAGGATTGTGGTACACGGAGAGCGCTTCCTGAAGACCATCAAACCTTATTCAGCTCAGGTCTTCAACATTGCCAATGAGTATAAACTCTCAAAGGAAAGGGTTCTGGAAGTGAGTGACCACTTCCCTATTGAGGTGGAGCTGAAGACTAAATCGTCAGGGCAGCTTCAAGCTCCGGTTCAGCCTCTCCTGCTAATTGCTCTCTCTGTCATCACCTCCGCCCTGCACATCTTACCTTCAACCAGTATGGTGTGAGGAGGACTGATGTTCTTCTCCAGAGTATGGATCTTTGAATTAGAATGAATTTTACATTTCTATGGTATGGACATCTATACAACTTCAATGAGCAGCTGGTTCACTCATGCAAGGGTTTGTCAAACCTGTCTCCGGGTACCCCTAGATGCTTCACTATTTTTGCTGTAGCCCTGAACTTGCTCACCTGAGTCATCTAATTAAGATGTTGATGATTCGTTGCTACGTTTAAACAGGTGTGCTAGCATGGATCTACTGGGGGTTCCTGAGGAGAGCTTTGAGAACCACTCCTCTAATAAACAGTGACTCCGTTTTTGACTGGTCCCATGAGATTGCAGACATTTTAGAGACGGCAACATTTATCACTACGCAAATTGACGGCATAATGTCCCTCATTTCAATTCATATCTATGGCTTCACTCTGGTGTTGGATTGCTGATCCCAGTTTTGCTCTGCTCTGACATGTGGTTTCAGGTATTTGACGTATAATATCTTGAATGGAAGGCTACAGATTCCCGACGCCACCACTTCTGCATTTAGTAAcatctattttgtaaattaaTGGTTGTAATATTTCTAATTCAATTAGGTTTTTAATGTGATGTGGTTTTTACATTGTCACTGTAAATGTTCAATGCATGTATTGTACACAGTATTTGAATAAAACGAAATTGATTTTAAAA

Function

NR:

description
deoxyribonuclease gamma-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036608.1 False 1405 mRNA 0.45 10 68265437 68272147
XM_021567043.2 True 1808 mRNA 0.45 9 68265441 68272147

Neighbor

gene id symbol gene type direction distance location
LOC110492616 LOC106566469 coding downstream 76 68249045 ~ 68265361 (-)
id1 id1 coding downstream 81018 68183225 ~ 68184419 (-)
LOC110492614 LOC106566471 coding downstream 89226 68170026 ~ 68176211 (-)
LOC118939464 NA coding downstream 101470 68160807 ~ 68163967 (-)
LOC110491155 LOC106572085 coding downstream 224896 67773270 ~ 68040541 (-)
LOC110492618 LOC106566485 coding upstream 7207 68279354 ~ 68336936 (-)
LOC110492621 LOC106566464 coding upstream 91027 68363174 ~ 68367397 (-)
LOC110491166 NA coding upstream 97848 68369995 ~ 68383908 (-)
LOC110491167 LOC106566462 coding upstream 172136 68444283 ~ 68620213 (-)
LOC118939573 NA coding upstream 392986 68665133 ~ 68670586 (-)
G1404061 NA non-coding downstream 49189 68216018 ~ 68216248 (-)
G1404059 NA non-coding downstream 51331 68213291 ~ 68214106 (-)
G1404035 NA non-coding downstream 75175 68190025 ~ 68190262 (-)
G1404031 NA non-coding downstream 79797 68185359 ~ 68185640 (-)
G1404017 NA non-coding downstream 110970 68154260 ~ 68154467 (-)
G1404348 NA non-coding upstream 9845 68281992 ~ 68335689 (-)
G1404367 NA non-coding upstream 53584 68325731 ~ 68326012 (-)
G1404368 NA non-coding upstream 55499 68327646 ~ 68327903 (-)
G1404373 NA non-coding upstream 62394 68334541 ~ 68334953 (-)
G1404385 NA non-coding upstream 87226 68359373 ~ 68359652 (-)
G1403498 NA other downstream 821258 67443421 ~ 67444179 (-)
G1402707 LOC106566505 other downstream 1770770 66484901 ~ 66494667 (-)
G1402686 srpk3 other downstream 1839115 66425551 ~ 66426322 (-)
LOC110492562 LOC106568106 other downstream 2510827 65715711 ~ 65754610 (-)
G1401617 NA other downstream 2629065 65635482 ~ 65636372 (-)
LOC118939478 LOC106566484 other upstream 519042 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 931139 69203286 ~ 69207158 (-)
G1405016 nsfl1c other upstream 1005680 69277827 ~ 69280359 (-)
G1405172 NA other upstream 1245608 69517755 ~ 69518113 (-)
G1405917 NA other upstream 1806510 70078657 ~ 70095541 (-)

Expression


Co-expression Network