LOC110492620


Basic Information

Item Value
gene id LOC110492620
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68301028 ~ 68345013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036609.1
CAAAGCTGGTGTATAGGACCAGCATGTGAGAGATGAACAGCGGCAGCTGCTGTCTGTTACGCTCTTTCAATGAGTTGTGAgtgcaagcagagcagaaactggctactctttagttgactgacctagctggcaaggatcagatggtgacaggtgttcCAGCAGGATCAGAcaaccagggaagaccagtctacggagctcaggtgaattttgcTGTATATTATAACAATCAGCGAATGGATACAAAGTTCCATCTCGAGTTGATGGCTACAGTCTGGGATCAGGGAATAATGCTTCCAGAAGGGTTGGATGAACACCCAGGAGCCCTCATTCCCCGTCCCGTCCAGGGTGACCCGCATGGCGTTCTTCTCCAGCAGGGCAGGCAGACGCTTATTCACAGTCAGagattaccacgagcccgtcctccccagttaaggtgccaccaacctcctgtgctcaaCAGTGCTGCTGATAATGCAGACCTTACCTGAATGTGTGCTGCTGGGAATGCAGACCTTACCTGAATGTGTGCTGCTGGGAATGCAGACCTTACCTGAATGTGTGCTGCTGGGAATGCAGACCTTACCTGAATGACAGTGCCATATTTTACTACATCGCCATGGACCTTCTTGTTTTCGGTCTCGTTCTGTTTTTGCTCCAGATTAGAGGCATGCTGTGAAGAACAAGGAAAGGTTTAATCAGTGTCCAATGTACTGTTTCTATCCTGATGGTATGATCCTTGTTCTACTGTTTCTAACCTGATGGTATGATCCTTGTTCTACTGTTTCTAACCTGATGGTATGATCCTTGTTCTACTGTTTCTATCCTGATGGTATGATCCTTGTTCTACTGTTTCTATCCTGATGGTATGATCCTTGTTCTACTGTTTCTAACCTGATGGTATGATCCTTGTTCTACTGTTTCTAACCTGATGGTATGATCCTTGTTCTACTGTTTCTATCCTGATGGTATGATCCTTGTTCTACTGTTTCTATCCTGATGGTATGACCTGTGTTCTACTGTTTCTAACCTGATGGTATGATCCTTGTTCTACTGTTTCTAACCTGATGGTATGATCCTTGTTCTACTGTTTCTATCCCGATGGTATGATCCTTGTTCTACTGTCTCTAACCTGGTGGTATGACCCTTGTTCTACTGTCTCTAACCTGGTGGTATGACTCTTGTTCTACTGTCTCTAACCTGGTGGTATGACCCTTGTTCTACTGTCTCTAACCTGGTGGTATGATCCGTGTTCTACTGTTTCTAACCTGATGGTATGACCTGTGTTCTACTGTTTCTAACCTGATGGTATGATCTGTGTTCTACTGTTTCTAGCCTGGCGGTATGACCCTTGTTCTACTGTTTCTAACCTGATGGTATGATCTGTGTTCTACTGTTTCTAGCCTGGCGGTATGACCCTTGTTCTACTGTCTCTAACCTGGTGGTATGACCCTTGTTCTACTGTCTCTAACCTGGTGGTATGATCCGTGTTCTACTGTTTCTAACCTGATGGTATGATCCGTGTTCTACTGTTTCTAACCTGATGGTATGATCTGTGTTCTACTGTTTCTAGCCTGGCGGTATGACCCTTGTTCTACTGTTTCTAACCTGATGGTATGATCTGTGTTCTACTGTTTCTAGCCTGGCGGTATGACCCTTGTTCTACTGTTTCTAACCTGGCGGTATGACCCTTGTTCTACTGTTTCTAACCTGGCGGTATGACCCTTACGATACAGTGTGGTGCCTGGTCTTCTTCCTGGAGTGGATTCTTGGAGAGAAACAGATTTTCTTTGCCTGCGTGTGTCGTTGTAGCAGAACTGTATCCTGTGAACTGTATTCTTCTCGATGGATTGGACAGAAGACGACTCAAGAGGAGCTGTTGTTTGATGGCAGTTTGGTCATGACAACACTCCTCCCACAGCTGTACAAGTATTCCCCGAactcactgtatgtactgtaccttTATAATGGCAATTTCCTCATGACCACCTCTCCCATCATCTGCTGATCACCACTTCTCTTAGTCTTCGTCGTCGATTCGTCTCATAAAGTGTCTGTGTCCAGTGGCAAGGGATCAGTTTGAATTTAGAAAagttattaaaataaataatttttttTTGCTCCATGAAGTAATCCAAGATGTCTGTCATCATGACATGTGACACTTTGTGGTGGACACCCACCTGTTTCGATCAATGAGAGAAgatttgaaataaataaaatggcaGCGTACACTGTTGGATTACTTCGTTATTTAGGGACAATGAGGGACATTGGGAGCTGTTTTTGAGAGGAAAGATCAGTCAACAAAGTGAATGGGGTGGGGGAGCTGAAGAAGGTGTGAAACGTCTTAGGAGGACAGTTCTTACACATTATGTTTTGCTGGGAAATTGAGGAGAAATGCCACCTTTTAATTGTtctcatacacaacaatacattgACTGTCTCTAAGCACAACCGAATCGCCCTTCCTAGTCTCAAAGACCTGTCTTTAAACCTCCCTCAGCCCATTGACTTTGACAAATCGTTTGTGTCAATAGTAGTCCTTGGCAGAGGATTTTTGTAGATGTGTCTTTGTATTGTGTTTTGAGAATCTGTAGAGAGAAGAATGTGGTGGTTGTGTCATTACTGTTGTGGTCTTGATGTTACACCTTGCAGTGTCCTTTGCCCGTTTCTGTCCCACAATCTTGTTGTACTCCATAACCGCAAGGTGTGTCCGCTCCCTCGTGCACAAAATGCCCACGCTTTGTATTTTTTTCAGCGGAGTGGACTCCAGATAACCTGGAGTTTTACAAAGGGAAAAGAGATGACATGGTCTGGAAGGTTCTCTGTGGTCCTCAGTCTACATCTAACCACCTGTAACCCCACAACACAAACCATACAAACATGCTTACTGTAAATCTTAGCCGTCAGCTTGTACATATTTTGAATCAATTTACCTTAACCAGAGCTAATGGAATGGTGGAATCAGATTATGTACCACCTACAACAAAACACCTAACAATACACAATTTAACCACCCTACTAATTGTATTGATCTCTATTAGACTGGGTAGCTTAGCATACCTATCATGGATTTGTCAGTACTgtcagcttgctgttagctaaTTAGCATCAGCTGAGAACCAACTAACCAACCATAGACAATTTATACACATTCATCATTACTACCAACACACCGAGAGTGAGTTAGCTATAATCGACAATTCTATTTTTAGTAACAGAGTGTTTTCCAGACAAGGGTGTAATAGATGGCTACCAGATTGAGTTACTCTTATTCGCTAACGTTCGCTAGCTTACATTCGCTAACGTTAGCCAAACTGGTATTGCATCACTTCCCAGCTGTCATTTAAACGTATTCCCCATCCAGTCAGCCTGAAAATCCCTCTGATAATCTTTGGCTGTAAGCATCATTTTTGATAGCTGCAAACAACTGGCAGCATCGGGGTATATTTCTGGTAGGTAGCTAGTACGGTGAAAGATAACTTATTTTCACATTTGTTTGTAGTTAGCACAGCCAGACAGAACACCACTCGGGCATGATGACAAACAttagtgaaaaaaaaaaacgtaaactTTTTTTTAGTTCTGAGACTACTATGTGTTGGTTGTTCGAAGTAAACAACGCTATAAACCAAGTTTGTGGGCACGCCCCATCTATCTAGCGGAGTGGTATCAGCATTTGCTATATTTGCTGGACTTAATGCTTCACTGTGAGCAGCCAaatacacaggaagctgaaactTCCTGATTCTACCATTGAAATGAAATAGTGCTCTTTCTAGCTTGTGGTTTGGATAATTTTGATGTTTATGACAAAAACATAATGTTGTTAATATAGTCATGACtaatctcagcaaaaaaagaacgtcctcttactgtcaactgcggttattttcagcaaacttaacatatatatacaaatatttgtatgacactaacaagattcaaca
>TU1603494
ACTGTTTCTAACCTGATGGTATGATCTGTGTTCTACTGTTTCTAGCCTGGCGGTATGACCCTTGTTCTACTGTTTCTAACCTGATGGTATGATCTGTGTTCTACTGTTTCTAGCCTGGCGGTATGACCCTTGTTCTACTGTTTCTAACCTGGCGGTATGACCCTTGTTCTACTGTTTCTAACCTGGCGGTATGACCCTTACGATACAGTGTGGTGCCTGGTCTTCTTCCTGGAGTGGATTCTTGGAGAGAAACAGATTTTCTTTGCCTGCGTGTGTCGTTGTAGCAGAACTGTATCCTGTGAACTGTATTCTTCTCGATGGATTGGACAGAAGACGACTCAAGAGGAGCTGTTGTTTGATGGCAGTTTGGTCATGACAACACTCCTCCCACAGCTGTACAAGTATTCCCCGAactcactgtatgtactgtaccttTATAATGGCAATTTCCTCATGACCACCTCTCCCATCATCTGCTGATCACCACTTCTCTTAGTCTTCGTCGTCGATTCGTCTCATAAAGTGTCTGTGTCCAGTGGCAAGGGATCAGTTTGAATTTAGAAAagttattaaaataaataatttttttTTGCTCCATGAAGTAATCCAAGATGTCTGTCATCATGACATGTGACACTTTGTGGTGGACACCCACCTGTTTCGATCAATGAGAGAAgatttgaaataaataaaatggcaGCGTACACTGTTGGATTACTTCGTTATTTAGGGACAATGAGGGACATTGGGAGCTGTTTTTGAGAGGAAAGATCAGTCAACAAAGTGAATGGGGTGGGGGAGCTGAAGAAGGTGTGAAACGTCTTAGGAGGACAGTTCTTACACATTATGTTTTGCTGGGAAATTGAGGAGAAATGCCACCTTTTAATTGTtctcatacacaacaata

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005220 inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036609.1 False 3950 mRNA 0.43 5 68301028 68345013
TU1603494 True 907 TUCP 0.43 2 68319655 68343495

Neighbor

gene id symbol gene type direction distance location
LOC110492619 LOC106566466 coding upstream 21739 68275495 ~ 68279289 (+)
LOC110492593 LOC105017353 coding upstream 827335 67459278 ~ 67476876 (+)
pim1 LOC106566482 coding upstream 898718 67398861 ~ 67402310 (+)
LOC110492590 LOC106566489 coding upstream 1025287 67260049 ~ 67275741 (+)
LOC110492589 kcnd1 coding upstream 1049401 67171830 ~ 67251627 (+)
LOC110491164 LOC106566465 coding downstream 3760 68348773 ~ 68357169 (+)
LOC110492622 LOC100380652 coding downstream 51749 68396762 ~ 68405191 (+)
LOC110492623 LOC106566463 coding downstream 77100 68422113 ~ 68431744 (+)
LOC110492628 LOC106566456 coding downstream 559797 68904810 ~ 68909231 (+)
LOC110492629 LOC106566457 coding downstream 567874 68912887 ~ 68915383 (+)
G1404106 NA non-coding upstream 10569 68290151 ~ 68290459 (+)
G1404105 NA non-coding upstream 10942 68289515 ~ 68290086 (+)
G1404098 LOC106566485 non-coding upstream 16432 68281769 ~ 68284596 (+)
G1404078 NA non-coding upstream 34465 68265440 ~ 68266563 (+)
G1404063 NA non-coding upstream 81378 68219416 ~ 68219650 (+)
G1404093 NA non-coding downstream 271 68345284 ~ 68345607 (+)
G1404153 ptn7 non-coding downstream 26567 68371580 ~ 68373836 (+)
G1404166 NA non-coding downstream 60742 68405755 ~ 68406645 (+)
G1404169 NA non-coding downstream 87100 68432113 ~ 68433787 (+)
G1404168 NA non-coding downstream 89499 68434512 ~ 68443855 (+)
G1403655 LOC106566486 other upstream 523537 67773293 ~ 67777491 (+)
G1403463 NA other upstream 561326 67738962 ~ 67739702 (+)
G1403412 LOC106566473 other upstream 647581 67653068 ~ 67653447 (+)
G1404281 LOC106566460 other downstream 336433 68681446 ~ 68681977 (+)
G1404700 NA other downstream 764701 69109714 ~ 69113350 (+)
G1404785 NA other downstream 900532 69245545 ~ 69253709 (+)
fkbp1ab LOC100705189 other downstream 960683 69305670 ~ 69312263 (+)
G1404827 NA other downstream 1019508 69364521 ~ 69369376 (+)

Expression


Co-expression Network