LOC110492628 (LOC106566456)


Basic Information

Item Value
gene id LOC110492628
gene name LOC106566456
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68904810 ~ 68909231 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567053.2
GAGGTGGAGGTTTTGTGGCGTTGCAAAGTAAGCAGCAAGACGATTGGTTGATGCTAGTCCAGGCAAAGGGCTTCTTGCCCAATCCTGATCATATTCAGACAAAAGTTACCTAGATAAGGGGTACTTATTGGGTAGTCATAGTACTGTGTCTATCAACGGTGTATCAGAAAGCCACTCTTTCCCTGGACTTCCACctttctctctgttgtctgtTGCAGCGGAGACAGCCACCATGCCTACTGAAACACAGAGTGATGCCCGCTCCTTCCTGAGCGAGGACATGATTGCCGAGTTCCAGGCTGCCTTCAACCTGTTCGACAGTGACGGTGGCGGTGACATCAGCACCAGGGAGTTGGGTCAGGTGATGAGGATGTTGGGCCAGAACCCGACCAGAGAGGAGTTGGCCCTGATCATCGAGGAGGTCGATGAGGATGGTAGCGGCAGCATCGACTTCGAGGAGTTCTTGGTCATGATGGTGAGGCTCCTGAAGGAGGACCAGGCCGGCAAGTCCGAGGAAGAGTTATCAGAGGTCTTCCGTATTTTCGACAAAAACGGCGACGGTTTTATTGACCGTGAGGAGTTAAATGACATCTTGGCCGCCACTGGAGAGCCAGTCACAGAGGAGGAATGTATCGAGCTAATGACAGACGCAGACCTAAACAAAGACAACAGGCTTGATTTTGATGAATTTCTGAAAATGATGGAGAATGTACAGTAACAAGACCACCATTCCTTTGTGACCCTTCCCATGTGTCACTTCTCCTGCTTGAAGAAAAGAACAACTGTTTCTGAATGGAAAAAAATCAAATACAAAAATGAAAGCCACATTTTATTTTTGAGTCTTCCCAACTACTTACAGTAAAGAGTCTACCCAAAAacattacaaatcaaatcaaactttattgatGGCGTACACAGATttacagatgttattgcaggtgcaaggaaatgcttgtgttaatatcagtaatatctagcaatacaa

Function

NR:

description
troponin C, skeletal muscle-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567053.2 True 985 mRNA 0.46 6 68904810 68909231

Neighbor

gene id symbol gene type direction distance location
LOC110492623 LOC106566463 coding upstream 473066 68422113 ~ 68431744 (+)
LOC110492622 LOC100380652 coding upstream 499619 68396762 ~ 68405191 (+)
LOC110491164 LOC106566465 coding upstream 547641 68348773 ~ 68357169 (+)
LOC110492620 NA coding upstream 559797 68301028 ~ 68345013 (+)
LOC110492619 LOC106566466 coding upstream 625521 68275495 ~ 68279289 (+)
LOC110492629 LOC106566457 coding downstream 3656 68912887 ~ 68915383 (+)
LOC118939574 NA coding downstream 22902 68932133 ~ 68934318 (+)
LOC110492631 LOC106566454 coding downstream 48334 68957565 ~ 68961010 (+)
LOC110492632 LOC106566452 coding downstream 52516 68961747 ~ 68970217 (+)
LOC110492634 LOC106566451 coding downstream 64483 68973714 ~ 69006032 (+)
G1404615 NA non-coding upstream 10983 68893058 ~ 68893827 (+)
G1404613 NA non-coding upstream 13160 68891395 ~ 68891650 (+)
G1404609 NA non-coding upstream 14455 68887035 ~ 68890355 (+)
G1404283 LOC106566460 non-coding upstream 217925 68683019 ~ 68686885 (+)
G1404280 LOC106566460 non-coding upstream 224313 68680025 ~ 68680497 (+)
G1404637 NA non-coding downstream 9819 68919050 ~ 68919289 (+)
G1404640 NA non-coding downstream 14232 68923463 ~ 68923913 (+)
G1404644 NA non-coding downstream 15773 68925004 ~ 68925243 (+)
G1404653 NA non-coding downstream 21347 68930578 ~ 68931336 (+)
G1404662 NA non-coding downstream 28458 68937689 ~ 68937994 (+)
G1404281 LOC106566460 other upstream 222833 68681446 ~ 68681977 (+)
G1404105 NA other upstream 614724 68289515 ~ 68290086 (+)
G1403655 LOC106566486 other upstream 1127319 67773293 ~ 67777491 (+)
G1403463 NA other upstream 1165108 67738962 ~ 67739702 (+)
G1404700 NA other downstream 200483 69109714 ~ 69113350 (+)
G1404785 NA other downstream 336314 69245545 ~ 69253709 (+)
fkbp1ab LOC100705189 other downstream 396465 69305670 ~ 69312263 (+)
G1404827 NA other downstream 455290 69364521 ~ 69369376 (+)
G1405216 NA other downstream 671498 69580729 ~ 69583626 (+)

Expression


Co-expression Network