LOC110492629 (LOC106566457)


Basic Information

Item Value
gene id LOC110492629
gene name LOC106566457
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68912887 ~ 68915383 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567054.2
GGAGTCCTGTGAGCATCAGTGGGCGTGTCTTAGGTGACCGGTTTAAAGTGTGTCTAAACTCACTTGACGTCTAGTCTTTCTGTTGAGGTGCACCCGGATTGACCACTCCTTTGGGCTATATTTCCGTGGATATTTAGGGGAAAGCTAATCAGCAACCATGACTGACGCGCAACAGGAGGCCCGCTCATACTTGAGCGAGGAGATGCTTAACGAGTTCAAGGCTGCCTTCGACATGTTTGACACCGACGGTGGCGGTGATATCAGCACCAAGGAATTGGGTCAGGTCATGAGGATGTTGGGCCAGAATCCGACAAGAGAGGAGTTGGATGAAATCATTGAGGAGGTCGATGAGGATGGTAGCGGAACCATCGACTTCGAGGAGTTCTTGGTCATGATGGTGAGGCTCCTAAAGGAGGACCAGGCCGGAAAGTCCGAGGGAGAGTTAGCGGAATGTTTCCGTGTGTTCGACAAGAATGCCGACGGCTATATCGACAGAGAAGAGTTCGCCATCATCATCCGCAGCTCTGGAGAACAAATCTCAGAGGAGGAAATTGATGAGCTGCTGAAGGATGGAGACAAGAACGCTGATGGCATGCTGGACTTTGACGAATTCCTCAAGATGATGGAAAATGTGCAGTAAAACGGAGACTCATGGACATTCCTCCTTCCTTTGACCCCTGCTGACCTATTCCGATCCTCTATTGACCCACTCCAACTCACCCTCCCTATCTGGTCCATTGCCCCCGTTCATCCACCTCAAAAAACAACTAGACCTGTTCGACAGGCACCTGGTGGAAGTTACCAGAGCTTTTGAGCCCTTCCTGCTTGTGATTGACGCCAAGCTGCTGCTGTTCCCCAAATTAGGTGGGCAAGGCCCGGGATGTGAAAATAACTGCAACTCTACAGAATGGCTCAGTGCATCATAGGCACTCAGCACAACAGCCTGAAGCTGGGAGCTTAGTCAGGACGTAGTCTAATGGGCTGCTTGTGATCGCTGCTTAGACCAATCACGTCACTGTAATAATAAATTGTTTGAAAGGAGATATTAATAAACACATGCTCA
>XM_036947648.1
GGCCCATAGCAAACCATGTTGCCGTTAATTCACGTCAGGTCTAATGAATATAATAATTCGTTTCCCGATACTTATGGCCTAATCATTCTAGAGTTCAAGGCTGCCTTCGACATGTTTGACACCGACGGTGGCGGTGATATCAGCACCAAGGAATTGGGTCAGGTCATGAGGATGTTGGGCCAGAATCCGACAAGAGAGGAGTTGGATGAAATCATTGAGGAGGTCGATGAGGATGGTAGCGGAACCATCGACTTCGAGGAGTTCTTGGTCATGATGGTGAGGCTCCTAAAGGAGGACCAGGCCGGAAAGTCCGAGGGAGAGTTAGCGGAATGTTTCCGTGTGTTCGACAAGAATGCCGACGGCTATATCGACAGAGAAGAGTTCGCCATCATCATCCGCAGCTCTGGAGAACAAATCTCAGAGGAGGAAATTGATGAGCTGCTGAAGGATGGAGACAAGAACGCTGATGGCATGCTGGACTTTGACGAATTCCTCAAGATGATGGAAAATGTGCAGTAAAACGGAGACTCATGGACATTCCTCCTTCCTTTGACCCCTGCTGACCTATTCCGATCCTCTATTGACCCACTCCAACTCACCCTCCCTATCTGGTCCATTGCCCCCGTTCATCCACCTCAAAAAACAACTAGACCTGTTCGACAGGCACCTGGTGGAAGTTACCAGAGCTTTTGAGCCCTTCCTGCTTGTGATTGACGCCAAGCTGCTGCTGTTCCCCAAATTAGGTGGGCAAGGCCCGGGATGTGAAAATAACTGCAACTCTACAGAATGGCTCAGTGCATCATAGGCACTCAGCACAACAGCCTGAAGCTGGGAGCTTAGTCAGGACGTAGTCTAATGGGCTGCTTGTGATCGCTGCTTAGACCAATCACGTCACTGTAATAATAAATTGTTTGAAAGGAGATATTAATAAACACATGCTCACTGGAA

Function

NR:

description
PREDICTED: troponin C, skeletal muscle-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567054.2 False 1063 mRNA 0.50 6 68912887 68915377
XM_036947648.1 True 948 mRNA 0.49 4 68913893 68915383

Neighbor

gene id symbol gene type direction distance location
LOC110492628 LOC106566456 coding upstream 3656 68904810 ~ 68909231 (+)
LOC110492623 LOC106566463 coding upstream 481143 68422113 ~ 68431744 (+)
LOC110492622 LOC100380652 coding upstream 507696 68396762 ~ 68405191 (+)
LOC110491164 LOC106566465 coding upstream 555718 68348773 ~ 68357169 (+)
LOC110492620 NA coding upstream 567874 68301028 ~ 68345013 (+)
LOC118939574 NA coding downstream 16750 68932133 ~ 68934318 (+)
LOC110492631 LOC106566454 coding downstream 42182 68957565 ~ 68961010 (+)
LOC110492632 LOC106566452 coding downstream 46364 68961747 ~ 68970217 (+)
LOC110492634 LOC106566451 coding downstream 58331 68973714 ~ 69006032 (+)
LOC110491169 arfgef2 coding downstream 94118 69009501 ~ 69056918 (+)
G1404615 NA non-coding upstream 19060 68893058 ~ 68893827 (+)
G1404613 NA non-coding upstream 21237 68891395 ~ 68891650 (+)
G1404609 NA non-coding upstream 22532 68887035 ~ 68890355 (+)
G1404283 LOC106566460 non-coding upstream 226002 68683019 ~ 68686885 (+)
G1404280 LOC106566460 non-coding upstream 232390 68680025 ~ 68680497 (+)
G1404637 NA non-coding downstream 3667 68919050 ~ 68919289 (+)
G1404640 NA non-coding downstream 8080 68923463 ~ 68923913 (+)
G1404644 NA non-coding downstream 9621 68925004 ~ 68925243 (+)
G1404653 NA non-coding downstream 15195 68930578 ~ 68931336 (+)
G1404662 NA non-coding downstream 22306 68937689 ~ 68937994 (+)
G1404281 LOC106566460 other upstream 230910 68681446 ~ 68681977 (+)
G1404105 NA other upstream 622801 68289515 ~ 68290086 (+)
G1403655 LOC106566486 other upstream 1135396 67773293 ~ 67777491 (+)
G1403463 NA other upstream 1173185 67738962 ~ 67739702 (+)
G1404700 NA other downstream 194331 69109714 ~ 69113350 (+)
G1404785 NA other downstream 330162 69245545 ~ 69253709 (+)
fkbp1ab LOC100705189 other downstream 390313 69305670 ~ 69312263 (+)
G1404827 NA other downstream 449138 69364521 ~ 69369376 (+)
G1405216 NA other downstream 665346 69580729 ~ 69583626 (+)

Expression


Co-expression Network