LOC110492630 (LOC106566458)


Basic Information

Item Value
gene id LOC110492630
gene name LOC106566458
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68915576 ~ 68917426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567055.2
CTGTAAGTACTTCCGGTGGCAAATACAGTGAAGAAGAAATCGTTAATTCGGAGGTTTGGCTGTTGTGCTCCTAGGTTTTTATTATTGATATTAAgctaaaataaatataaacaccTCGACACAAACCGTTTCAGGATTCCAATTGCATCTTCCTGAAACGTTTGCGAAACACCTTTGGACACTGGGATTTGTAACTAGCCAGCTAAGTTAGCCACGTTAttaattagctagttagctaacgctAGCTACAATTGCTAGCTCTAGTACACCGTTTGGCGCTGGTAGAATGGCGGAGGAGGAAGACGAAACCAATTTCGACGAGGATTTGGATGACGGGGCGGGTGGAACCGATGGGAGCCACGGCAAGCGAAAACGGTTGTTTTCTAAAGAGCTTCGGTGTATGATGTATGGGTTTGGAGACGACCAGAATCCCTACACTGAATCAGTGGACATCCTGGAGGACCTTGTGATCGAGTTCGTCACGGAGATGACACACAAAGCCATGTCCATCGGACGCCAGGGCCGTGTCCAGGTGGAAGACATTGTTTTCCTCATCCGGAAAGATCCAAGGAAGTTTGCCAGAGTGAAGGACCTCTTGACGATGAACGAGGAGTTGAAGAGAGCCCGCAAGGCCTTTGATGAAGCAAACTATGGTTCTTAGGTCCTGTGGTTGTAGAGGGATATGGGCTTCAACATGGATTTTTTTTCCCGCATTGTCCATGCTGTGTATTCTGCTATGATTattaaacatgtttttataagGATCTAACGTTTATTTTGTAGCAGATGTGGCCATAGAGATGTTAATTGACCATCCACTTGTGACTTCAGTTATGTTTGTGCTCATGTCAAATGCCAATGCCTTATATACATATCTTTATCAAAATCATCTGTGTGTGGCTTTCTGGCAGACTAGATGCTATGTTGCTGCCTTTCAGTTGGGAATTATACGTTTGTTCACAAATAATCTCTCAATCTAATAGCGTAGACGAATAACAGGATGGCAGGTAGCTGAGAGTTTTGCTGTTTCGAATACCTGAGCTGACACTGAAAAAAATGGtctgtacccttgagcaaggcacttaaccctgatTTGTTTTAGGGGGGCTGCCTACTATGGCTTACCCTGTAAAACATCAcaattcactgcacctatccggtgtatgtgaaaACTTAATACTGGAAAGTTCTCATTAAAGTCCGTCTGCTGAAGGATATTGCTTTGCAGTATAAATCATGTCATGTGAGCTAACTTTGCTCTTGTGAGAGGATTGTCCCATTCCTCGCTAAGGATAGGCATGGTGAAATGAATACAGTAACTTACACCTTTTGACACCGTCTTCCATCCTTTACGGAGATATTTATTTCAGGACATGGCCCAGAGGGGAGGTCAATGTAGACTTTCTATATGAATCCATGGATGAGTTTTTGTTCCGGGACCATTTAACTTGCTCCTACAACTTTAGACAGTGGATATATAGTGTTATTGTTGAATAAACTATTTGGCCTGTGCTGTtattaaatgtttgcaaatgaatGCACATGGACCTAACTGCATGCAATGAAACTGCAAGACGGAGTTTATCCTTTGTCTCTTAACCCTGGGTTTCCTCAAACTCTGTCCTGgagcctctcccctcccctccctacctTTTGTTTTTTACCCAAGGACTGCACAGCGGATTCAAACAACCAACTCCAAGCTTTGAATCGGCTGTGGGCAAAAGGTGCACCCCTGGGGGGCAGGACCAACTTTAGGAAACCCTGCCTTAACTCACTGTATCAGTACTCTATTTTAAGTGGGACTCCTTTGGCTCAAATTGTTTGCATAATCAATATATTAAAAACTTG

Function

NR:

description
transcription initiation factor TFIID subunit 13

GO:

id name namespace
GO:0006366 transcription by RNA polymerase II biological_process
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K03127 TAF13; transcription initiation factor TFIID subunit 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567055.2 True 1851 mRNA 0.43 1 68915576 68917426

Neighbor

gene id symbol gene type direction distance location
LOC110491168 LOC106566483 coding downstream 19456 68894981 ~ 68896120 (-)
LOC118939478 LOC106566484 coding downstream 122248 68791189 ~ 68795025 (-)
LOC110492626 LOC106566459 coding downstream 143323 68703920 ~ 68772253 (-)
LOC110492627 LOC106566460 coding downstream 211973 68671413 ~ 68703603 (-)
LOC118939573 NA coding downstream 244990 68665133 ~ 68670586 (-)
LOC110492636 LOC106566437 coding upstream 195590 69113016 ~ 69123466 (-)
LOC110492644 LOC106566447 coding upstream 437076 69354502 ~ 69379181 (-)
LOC110491170 LOC106566448 coding upstream 552990 69470416 ~ 69506016 (-)
LOC118939576 NA coding upstream 654427 69571853 ~ 69575843 (-)
LOC110491172 LOC106566442 coding upstream 660248 69577674 ~ 69666017 (-)
G1404628 LOC106566457 non-coding downstream 224 68913629 ~ 68915352 (-)
G1404634 NA non-coding downstream 8325 68904808 ~ 68907251 (-)
G1404624 NA non-coding downstream 14084 68900364 ~ 68901492 (-)
G1404608 NA non-coding downstream 29170 68886175 ~ 68886406 (-)
G1404588 NA non-coding downstream 126478 68788892 ~ 68789098 (-)
G1404636 NA non-coding upstream 292 68917718 ~ 68917975 (-)
G1404642 NA non-coding upstream 5433 68922859 ~ 68923213 (-)
G1404645 NA non-coding upstream 6924 68924350 ~ 68924558 (-)
G1404648 NA non-coding upstream 7874 68925300 ~ 68925538 (-)
G1404661 NA non-coding upstream 18166 68935592 ~ 68937610 (-)
G1403498 NA other downstream 1471397 67443421 ~ 67444179 (-)
G1402707 LOC106566505 other downstream 2420909 66484901 ~ 66494667 (-)
G1402686 srpk3 other downstream 2489254 66425551 ~ 66426322 (-)
LOC110492562 LOC106568106 other downstream 3160966 65715711 ~ 65754610 (-)
G1404974 LOC106566438 other upstream 285860 69203286 ~ 69207158 (-)
G1405016 nsfl1c other upstream 360401 69277827 ~ 69280359 (-)
G1405172 NA other upstream 600329 69517755 ~ 69518113 (-)
G1405917 NA other upstream 1161231 70078657 ~ 70095541 (-)
LOC110492660 LOC106566428 other upstream 1302451 70216538 ~ 70221552 (-)

Expression


Co-expression Network