LOC110492634 (LOC106566451)


Basic Information

Item Value
gene id LOC110492634
gene name LOC106566451
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68973714 ~ 69006032 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567059.2
ATAAGTTTGACTTGATTCTGACAGTCGCGGGAGTGTGCGTGTTGGGAACGAGGCTCCAGGCAGGGGCCGCTTCCTGGGTGCGTTAGAAGCGTCACGCAGGACAGCGTTTAAGTGGTTAAACGGGCGATGTGACGGCGAGTTTTGAGAAGATAAGTTTAGAGCAGGTTGGTTGTGGAGGAGGACAATAATCCAAACGAGGGAATTTCAGTATTTTATAAGGACACACAGCTAACTGGAATAACTTGTGTTGATATAATTTGGGATAGAGGGCAGACGAGGGCAGCCCCGTGAGGGCAAGTGTGTGCTGTGGCGCTCCTGTTAGCGAAAGATGAACAAGAACCACCGAGTGCCGAGCAACCGGTCTCTGGGCGCCGTGGAGGTGAAGAGCAAGttTGGGGCTGAATTCCGCCGGTTCTCCCTGGACCGGTCCAAGCCGGGCCGGTTTGATGAGTTCTATAGGCTCCTACAGCACATGCACCGGATCCCAAACGTGGACCTGCTGGTGGGCTATGCTGACGTCCACGGTGACCTGCTGCCAATCAACAACGATGACAACTACCGCAAAGCCATCTCCGTGGCTGACCCCGTGCTTCGCCTCTTCCTGCAGAGGAAAGAGGAAGCCGACTACTCTGCGTTTGGTCTGGACTCTCTGACCCGTCCCAAGAAGACGGTCCTAGCGGCCATGTTGCTACGGCCTGATGCCAACCGGAAGAAGCCCCTTGTGATCATCAGCCTGCCCAGGGACTTCAGGCCCGTCTCCTCCATCATCGACGTGGACATCCTCCCTGAGACACACCGCCGGGTTCGCCTCTACAAGCACGGCCAGGAGAAACCGCTGGGCTTCTACATCCGAGACGGCTCCAGTGTCCGGGTCACGCCCCAGGGCCTGGAGAAGGTTCCTGGGATCTTCATCTCCCGCATGGTGCCTGGGGGCCTGGCTGAGAGCACTGGCCTGCTGGCCGTCAACGACGAGGTTCTGGAGGTCAACGGCATCGAGGTGCAAGGCAAGTCTCTGGACCAGGTGACAGACATGATGATCGCCAACAGCCACAATCTCATCGTGACGGTGAAGCCGGCCAACCAGCGCAACAACATCGTACGGAGTGGCGGGGGCGGGGCAGCGTCCGGGAGCTCGGGACACTCGTCCGACAGTGGCACCAGTTTCTACGGCTACTCCTCCCCGGGCATTGCCGTGGCGACGACTCCGGCAGACATCATCCAGAACTTCCATCCAGAGGAGCTGGAgagtgatgaggatgatgaggacCTTGTGATAGAGGTGGACGGAGAGGCCATGCCCATCCCACGGACCTCCTCGGCCAGCTGTACCATACCCTTCATTCCTCGCTACATGCCCCACCTGGACCTCCGCACCACCAACGGAGCCCTGGCCTCCCACAACCGCTCCGGCTCACTGGGCACGCTCAGCACTGCCGACAGGGGCCTGGAGGGAAGGAGCTTAGAGGAGGAAGGCACCGTCAttacactgtaaacacacactgtCGTAGTTGCATAGTATTTACGGGAACGcaaacacacagtctgacatacactgAAGCGTACTGTCATGCATACACAAAGAACGACAACATCCACACATGCGTTGCCATAGTATCGACACCGCCCTccctatgctgtctgacagacACATTGATTACCCGTGGTGTTTTGTGTGGAGGAGGAAAGTGACTCTGCCTCGGAGAAAGGCCTCCAACTTCTCATTGACAACCATAAAAAGCACTTGTTTCTATTTAGTGAGGGATGAGACTGTTTCTGTGGTCTTCCACTTGAGGGCAGCAATGAGATGCTACACTGTTGTTTTTTCAATTTTGTGAACCATAGGAAAGGACGGATTTTAATGAACAAACAAATGAATGAACGAATGAATGATTGCAGACATCTTTAGGCTTTGACCTTACCCTAGCTATTCTGCCCTGGTTTGTTTGATAGAGGAGACTACATTTCACAATCTGCTTTTGCCTTGTCACTTTGCAAACGACAACAACCATTCCCCTAGGAGATTACAGCTTGTGATTTTGGGAACAAAAGTAATGGCTTCTATCCTACATGTTACCATAGTAACTACCAAAGAGTAGAGGTCTGCAATAACACTCAGATTTTAGTCTGAGGAGAAACGATGTATATGGGTCTCTCTTCATGGACCCGGACATTAACCACTATTCCTGTGTTTCGTCTCCAAGCTTTTAATGTTGTTTATCACAAGAAAAAAACTAGAAGCAATTATGTAAAGCAACTGAAATGACAAAATctcttaaaggggaaatctgtaaTTGCAACATCCAATTTTAGACTTTTAAAtgaatgtatttgtgtgtgtgtgtgtgtgtgtgtgtactgattcttgaagaatataactaatAAAAGCCTTGTGAGCTTAGTTCTATTGTCGAACCCCATCAGAATCCAAAATTTAAGCTTGTTATACCTCTTTGTTTTGTAGACTAGGTAAAtacaaacaaacactgtatagcgtCAACATGGTTAGAACTCTCATTTTGTTATCATGCATTGTCATTCCTTGTATCCGTAGATCTGTCCATGGGTTCGAGAGTGTTTTCAATTCTATAAACCCCATCCTTCAGCCTTCTACCAAAATAGTGGCGGGGAGTCAGTTTTGTTGTTTTGAGCTGCAGATTTCCGCTCTAAATATTTTCATTCTATTTCTTTTACGGTTTTATTTTAATCTAAAATGGTTCACtgtatgatttttttattttttttatttagttcAAAATAAGTATCTCAATTCACTGTCACGGACCAACACCTCATCTGACAGGTGTGCTGTCCCTGCCTGGATGAAGATCCATCTTGTTTTTCATCCAACTTCTCTTTCCTCACGACAAGGGCAATTTCCCCACTTCGTGTACATAGTGTGACAGAATGTGATTGTAAATGTGATTCTCTGATTTCTcagacatgttctctctctcgctctctcgtctctgtctgtctgtctggtttggGAGGATGTATTTGTAACAACAGATGGTGGCTTTCTTAGTTTTCCAACTCTTGAGTTCACTTGGATGTGGCCTGAATCATTCACATTTGAAGAGTGTTCTCGCTTCATGTACAGTATTTATTCACTATTTCATTGTATATTGTTTGGAGTAAACCCTCAGTCGATCTTCAACAGAATGTGATACTGGTATAGATGACTAGCTGGACTGTGACACTGAGTACCACAGAGATGTTACGTAACTTAGAGCCAGGACGCTAATGACCCTGGAGAGGATGTCTGGGACTGTTATAGAACCCAGTCTGCAGGAAGAAGTTAgaatattttgtcttgcacacGCTCTCACACATACCGACCCGGTCTCTGTGTTTGAGTAAGGTGGAGTTTGTCTAGCGCTATGCATTATGACTTGGATCAGGTGATCATTCCCACTTGTTCCTGGTCACATGACATCACCTGATGACTGTACCTACCTGTTCAGGAAGGTGAACACCAGCAAGTTCATTAGAATGTCATTAGTGTAGAGCCAACCGACTTCCCCAAAACACAAGACAGGATAGCACTGCAGAACATCCTCATTCCAATAGATTGTAGTTTTATTCTGTGTGTTTAGTTGCCAGTGAGCTTGTTGTGAAGTATAATGAGAATTTAGACTAAGGCTGTACTCAACATGTAAACATTAAATGACGCTAACAGACTCCACTGAGAGCAGATGGTGTATCGATGTCCATTTCTCCTATTGCTTTTTACCATCCTCTCTGATGGGGAAACAAAATGTTCTGGGAACAGTTgcctccctcacccccctctctcctcctcagtctgacTGCAATGGGTCTTACCTGCAGAAATACCTGATGAGAATCATAAACACTGGATCACTGTAATCAGACATGCCATCTACCCAGAGTAGGGTATCATGTGAACTCCACTAGCCCTCCCTATCAGATATGCCATCTACCCAGAGCAGGGTATCATGTGAACTCAACTCCCCCTCCTTTTCATACTGTGAGGTACAGTACTACTCTATTCTGTTATGGTACAGGGTGTAGAAGAGTTGggattgctttctctctctccctctcattccaaACAGTTCTGGAACATTCAAGGCATGATGAGTCACATTTTAGAAtggaaagtaaaaaaaaaaaaatttaaaaaatgatctGTTAATTTATTATTGTTTTAACTACACAGGACATGGGGATCGTAACCACAACAACTATTTATTTTCTAATCATGTTTCTGTATATTCTTTTTCATTGCTAAGTCAGTAAACATTGTAATGTGTTATAACTGATCCACTGTGTTAATTCATGGTTTAATTTCATTTTCTAATCTGTTCTTTCCCTTTTTTTCAAAAGTGATTTTGTTAAATAGCTTATTTTCTGTACAAACAGCTTCTAGGGGTTTAGATTATGACACTTTTCCTGTACTGTGAATTCCTCTATTCCTGGGAGAGACCTGTATGTTTCAGAGAACACTAACCAGGCTGGGAGAGACCTGTATGTTTCAGAGAACACTAACCAGGCTGGGAGAGACCTGTATGTTTCAGAGAACACTAACCAGGCTGGGAGAGACCTGTATGTTTCAGAGAACACTAACCAGGCTGGGAGAGACCTGTATGTTTCAGAGAACACTAACCAGGCTTTGGAATTtggtttgtctgtttgttttttaa
>XM_021567060.2
TTGACTTGATTCTGACAGTCGCGGGAGTGTGCGTGTTGGGAACGAGGCTCCAGGCAGGGGCCGCTTCCTGGGTGCGTTAGAAGCGTCACGCAGGACAGCGTTTAAGTGGTTAAACGGGCGATGTGACGGCGAGTTTTGAGAAGATAAGTTTAGAGCAGAGGGCAGACGAGGGCAGCCCCGTGAGGGCAAGTGTGTGCTGTGGCGCTCCTGTTAGCGAAAGATGAACAAGAACCACCGAGTGCCGAGCAACCGGTCTCTGGGCGCCGTGGAGGTGAAGAGCAAGttTGGGGCTGAATTCCGCCGGTTCTCCCTGGACCGGTCCAAGCCGGGCCGGTTTGATGAGTTCTATAGGCTCCTACAGCACATGCACCGGATCCCAAACGTGGACCTGCTGGTGGGCTATGCTGACGTCCACGGTGACCTGCTGCCAATCAACAACGATGACAACTACCGCAAAGCCATCTCCGTGGCTGACCCCGTGCTTCGCCTCTTCCTGCAGAGGAAAGAGGAAGCCGACTACTCTGCGTTTGGTCTGGACTCTCTGACCCGTCCCAAGAAGACGGTCCTAGCGGCCATGTTGCTACGGCCTGATGCCAACCGGAAGAAGCCCCTTGTGATCATCAGCCTGCCCAGGGACTTCAGGCCCGTCTCCTCCATCATCGACGTGGACATCCTCCCTGAGACACACCGCCGGGTTCGCCTCTACAAGCACGGCCAGGAGAAACCGCTGGGCTTCTACATCCGAGACGGCTCCAGTGTCCGGGTCACGCCCCAGGGCCTGGAGAAGGTTCCTGGGATCTTCATCTCCCGCATGGTGCCTGGGGGCCTGGCTGAGAGCACTGGCCTGCTGGCCGTCAACGACGAGGTTCTGGAGGTCAACGGCATCGAGGTGCAAGGCAAGTCTCTGGACCAGGTGACAGACATGATGATCGCCAACAGCCACAATCTCATCGTGACGGTGAAGCCGGCCAACCAGCGCAACAACATCGTACGGAGTGGCGGGGGCGGGGCAGCGTCCGGGAGCTCGGGACACTCGTCCGACAGTGGCACCAGTTTCTACGGCTACTCCTCCCCGGGCATTGCCGTGGCGACGACTCCGGCAGACATCATCCAGAACTTCCATCCAGAGGAGCTGGAgagtgatgaggatgatgaggacCTTGTGATAGAGGTGGACGGAGAGGCCATGCCCATCCCACGGACCTCCTCGGCCAGCTGTACCATACCCTTCATTCCTCGCTACATGCCCCACCTGGACCTCCGCACCACCAACGGAGCCCTGGCCTCCCACAACCGCTCCGGCTCACTGGGCACGCTCAGCACTGCCGACAGGGGCCTGGAGGGAAGGAGCTTAGAGGAGGAAGGCACCGTCAttacactgtaaacacacactgtCGTAGTTGCATAGTATTTACGGGAACGcaaacacacagtctgacatacactgAAGCGTACTGTCATGCATACACAAAGAACGACAACATCCACACATGCGTTGCCATAGTATCGACACCGCCCTccctatgctgtctgacagacACATTGATTACCCGTGGTGTTTTGTGTGGAGGAGGAAAGTGACTCTGCCTCGGAGAAAGGCCTCCAACTTCTCATTGACAACCATAAAAAGCACTTGTTTCTATTTAGTGAGGGATGAGACTGTTTCTGTGGTCTTCCACTTGAGGGCAGCAATGAGATGCTACACTGTTGTTTTTTCAATTTTGTGAACCATAGGAAAGGACGGATTTTAATGAACAAACAAATGAATGAACGAATGAATGATTGCAGACATCTTTAGGCTTTGACCTTACCCTAGCTATTCTGCCCTGGTTTGTTTGATAGAGGAGACTACATTTCACAATCTGCTTTTGCCTTGTCACTTTGCAAACGACAACAACCATTCCCCTAGGAGATTACAGCTTGTGATTTTGGGAACAAAAGTAATGGCTTCTATCCTACATGTTACCATAGTAACTACCAAAGAGTAGAGGTCTGCAATAACACTCAGATTTTAGTCTGAGGAGAAACGATGTATATGGGTCTCTCTTCATGGACCCGGACATTAACCACTATTCCTGTGTTTCGTCTCCAAGCTTTTAATGTTGTTTATCACAAGAAAAAAACTAGAAGCAATTATGTAAAGCAACTGAAATGACAAAATctcttaaaggggaaatctgtaaTTGCAACATCCAATTTTAGACTTTTAAAtgaatgtatttgtgtgtgtgtgtgtgtgtgtgtgtactgattcttgaagaatataactaatAAAAGCCTTGTGAGCTTAGTTCTATTGTCGAACCCCATCAGAATCCAAAATTTAAGCTTGTTATACCTCTTTGTTTTGTAGACTAGGTAAAtacaaacaaacactgtatagcgtCAACATGGTTAGAACTCTCATTTTGTTATCATGCATTGTCATTCCTTGTATCCGTAGATCTGTCCATGGGTTCGAGAGTGTTTTCAATTCTATAAACCCCATCCTTCAGCCTTCTACCAAAATAGTGGCGGGGAGTCAGTTTTGTTGTTTTGAGCTGCAGATTTCCGCTCTAAATATTTTCATTCTATTTCTTTTACGGTTTTATTTTAATCTAAAATGGTTCACtgtatgatttttttattttttttatttagttcAAAATAAGTATCTCAATTCACTGTCACGGACCAACACCTCATCTGACAGGTGTGCTGTCCCTGCCTGGATGAAGATCCATCTTGTTTTTCATCCAACTTCTCTTTCCTCACGACAAGGGCAATTTCCCCACTTCGTGTACATAGTGTGACAGAATGTGATTGTAAATGTGATTCTCTGATTTCTcagacatgttctctctctcgctctctcgtctctgtctgtctgtctggtttggGAGGATGTATTTGTAACAACAGATGGTGGCTTTCTTAGTTTTCCAACTCTTGAGTTCACTTGGATGTGGCCTGAATCATTCACATTTGAAGAGTGTTCTCGCTTCATGTACAGTATTTATTCACTATTTCATTGTATATTGTTTGGAGTAAACCCTCAGTCGATCTTCAACAGAATGTGATACTGGTATAGATGACTAGCTGGACTGTGACACTGAGTACCACAGAGATGTTACGTAACTTAGAGCCAGGACGCTAATGACCCTGGAGAGGATGTCTGGGACTGTTATAGAACCCAGTCTGCAGGAAGAAGTTAgaatattttgtcttgcacacGCTCTCACACATACCGACCCGGTCTCTGTGTTTGAGTAAGGTGGAGTTTGTCTAGCGCTATGCATTATGACTTGGATCAGGTGATCATTCCCACTTGTTCCTGGTCACATGACATCACCTGATGACTGTACCTACCTGTTCAGGAAGGTGAACACCAGCAAGTTCATTAGAATGTCATTAGTGTAGAGCCAACCGACTTCCCCAAAACACAAGACAGGATAGCACTGCAGAACATCCTCATTCCAATAGATTGTAGTTTTATTCTGTGTGTTTAGTTGCCAGTGAGCTTGTTGTGAAGTATAATGAGAATTTAGACTAAGGCTGTACTCAACATGTAAACATTAAATGACGCTAACAGACTCCACTGAGAGCAGATGGTGTATCGATGTCCATTTCTCCTATTGCTTTTTACCATCCTCTCTGATGGGGAAACAAAATGTTCTGGGAACAGTTgcctccctcacccccctctctcctcctcagtctgacTGCAATGGGTCTTACCTGCAGAAATACCTGATGAGAATCATAAACACTGGATCACTGTAATCAGACATGCCATCTACCCAGAGTAGGGTATCATGTGAACTCCACTAGCCCTCCCTATCAGATATGCCATCTACCCAGAGCAGGGTATCATGTGAACTCAACTCCCCCTCCTTTTCATACTGTGAGGTACAGTACTACTCTATTCTGTTATGGTACAGGGTGTAGAAGAGTTGggattgctttctctctctccctctcattccaaACAGTTCTGGAACATTCAAGGCATGATGAGTCACATTTTAGAAtggaaagtaaaaaaaaaaaaatttaaaaaatgatctGTTAATTTATTATTGTTTTAACTACACAGGACATGGGGATCGTAACCACAACAACTATTTATTTTCTAATCATGTTTCTGTATATTCTTTTTCATTGCTAAGTCAGTAAACATTGTAATGTGTTATAACTGATCCACTGTGTTAATTCATGGTTTAATTTCATTTTCTAATCTGTTCTTTCCCTTTTTTTCAAAAGTGATTTTGTTAAATAGCTTATTTTCTGTACAAACAGCTTCTAGGGGTTTAGATTATGACACTTTTCCTGTACTGTGAATTCCTCTATTCCTGGGAGAGACCTGTATGTTTCAGAGAACACTAACCAGGCTGGGAGAGACCTGTATGTTTCAGAGAACACTAACCAGGCTGGGAGAGACCTGTATGTTTCAGAGAACACTAACCAGGCTGGGAGAGACCTGTATGTTTCAGAGAACACTAACCAGGCTGGGAGAGACCTGTATGTTTCAGAGAACACTAACCAGGCTTTGGAATTtggtttgtctgtttgttttttaa

Function

NR:

description
partitioning defective 6 homolog beta-like

GO:

id name namespace
GO:0016324 apical plasma membrane cellular_component

KEGG:

id description
K06093 PARD6; partitioning defective protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567059.2 False 4667 mRNA 0.46 3 68973714 69006032
XM_021567060.2 True 4559 mRNA 0.46 4 68973720 69006032

Neighbor

gene id symbol gene type direction distance location
LOC110492632 LOC106566452 coding upstream 3497 68961747 ~ 68970217 (+)
LOC110492631 LOC106566454 coding upstream 12704 68957565 ~ 68961010 (+)
LOC118939574 NA coding upstream 39396 68932133 ~ 68934318 (+)
LOC110492629 LOC106566457 coding upstream 58331 68912887 ~ 68915383 (+)
LOC110492628 LOC106566456 coding upstream 64483 68904810 ~ 68909231 (+)
LOC110491169 arfgef2 coding downstream 3469 69009501 ~ 69056918 (+)
LOC110492635 bclx coding downstream 54323 69060355 ~ 69104116 (+)
LOC118939575 NA coding downstream 118845 69124877 ~ 69168201 (+)
LOC118939479 NA coding downstream 163691 69169723 ~ 69173281 (+)
LOC110492638 LOC106566438 coding downstream 176176 69182208 ~ 69207186 (+)
G1404695 NA non-coding upstream 121 68973334 ~ 68973593 (+)
G1404694 NA non-coding upstream 775 68972600 ~ 68972939 (+)
G1404685 NA non-coding upstream 21312 68952139 ~ 68952402 (+)
G1404674 NA non-coding upstream 26349 68947133 ~ 68947365 (+)
G1404663 NA non-coding upstream 35431 68938045 ~ 68938283 (+)
G1404736 NA non-coding downstream 64759 69070791 ~ 69077789 (+)
G1404737 NA non-coding downstream 67754 69073786 ~ 69076041 (+)
G1404739 NA non-coding downstream 70486 69076518 ~ 69076984 (+)
G1404741 NA non-coding downstream 74891 69080923 ~ 69084989 (+)
G1404745 NA non-coding downstream 86618 69092650 ~ 69094088 (+)
G1404281 LOC106566460 other upstream 291737 68681446 ~ 68681977 (+)
LOC110492620 NA other upstream 630219 68301028 ~ 68345013 (+)
G1404105 NA other upstream 683628 68289515 ~ 68290086 (+)
G1403655 LOC106566486 other upstream 1196223 67773293 ~ 67777491 (+)
G1403463 NA other upstream 1234012 67738962 ~ 67739702 (+)
G1404700 NA other downstream 103682 69109714 ~ 69113350 (+)
G1404785 NA other downstream 239513 69245545 ~ 69253709 (+)
fkbp1ab LOC100705189 other downstream 299664 69305670 ~ 69312263 (+)
G1404827 NA other downstream 358489 69364521 ~ 69369376 (+)
G1405216 NA other downstream 574697 69580729 ~ 69583626 (+)

Expression


Co-expression Network