LOC110492636 (LOC106566437)


Basic Information

Item Value
gene id LOC110492636
gene name LOC106566437
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 69113016 ~ 69123466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947659.1
gacagacagacagacagacagacagagtattaCTCTTGCAATTCAAACAAATCTCCAAAATTAGCTAGTATTCCCAGCCTTTCTGAATCGTCCCCTGGTTTTAGTTTAGTCTAAACCTGGAGTGGGGGGCTATAGTGTAATTAAGGACGCTTTCCCATATCCCCTGTATGATCCTGGAGCGTTCGGTACCCTGATCCGCGCTATAAAGAATATGTAAAACGGAAACGAATCCTGGACAATACCTGGGCTGTGGATTCAAGATTTAGGACCAGGGTAGCAGGTGGACCAGGGTAGCAGATGCTTCACCTGACAGCAGGACGAGTCGGGGGCTTGTTTTCCAGGCGCGCGGTGGTGGGACTGACCAACAGTGGTGCGAGGATGTCAAGCCACCACGAGGTATCTGACCAGGTGGACATGTCCCAGCCAATGTACTGGGATCGTCTGGACACCCCTCTGCCAGACAGAGCATGGATTGATGTCCTTGATTCTAAGGATAAGAGTCTGAAACAGAAGGAGAAGGGGCCATGGACTGCACTGTCCAAGGAGGAAAAAATTGCCTTGTACAGGCTGAAGTTCAACCACACCTACCCTGAGATGAAGAAGCCGTCCCATGAGTGGAAGACCGTGATTGGTGGGATGTTCATCTTCTTTGGCATCACTGGTCTGGTGGTGTTTTGGCAGGGCCACTATGTGTACCCACCTCAACCTCACACTTTTGGTGAGGAGTGGCAGGCTAAGCAGATCCAGAGGATGCTGGACATGCGGGTCAACCCAATTGAGGGCTTTTCTGCCAAGTGGGACTACAAGAACAAACAATGGAAGTAAATGAAGTAATGGAATGGACGGGATACTGTACTGAAATGAGGAGCGGTTGGACTTGACAACACCTTGAGCCTCTGTTTAGCCAACAGCCTCTCCTTCCACCATAGTGGCAAGCTACCCATCTGAatccatccccatactgtttaagtaaaaaattacaaaaaacg
>XM_036947658.1
CCCCTCTCTGCCTTTAGCCCTCCCATTTTCTCCCCAAGAGCCAAAGCTGAGACACAGCCACAGTGCGCCAAAGCAGGCAATCGCTGAAGAGTGGGTGAACTTTTTTTTGTCCATATTGTTTTTCTCAAGGTCCACTCTCTCAGGACAAATATGCTTCACCTGACAGCAGGACGAGTCGGGGGCTTGTTTTCCAGGCGCGCGGTGGTGGGACTGACCAACAGTGGTGCGAGGATGTCAAGCCACCACGAGGTATCTGACCAGGTGGACATGTCCCAGCCAATGTACTGGGATCGTCTGGACACCCCTCTGCCAGACAGAGCATGGATTGATGTCCTTGATTCTAAGGATAAGAGTCTGAAACAGAAGGAGAAGGGGCCATGGACTGCACTGTCCAAGGAGGAAAAAATTGCCTTGTACAGGCTGAAGTTCAACCACACCTACCCTGAGATGAAGAAGCCGTCCCATGAGTGGAAGACCGTGATTGGTGGGATGTTCATCTTCTTTGGCATCACTGGTCTGGTGGTGTTTTGGCAGGGCCACTATGTGTACCCACCTCAACCTCACACTTTTGGTGAGGAGTGGCAGGCTAAGCAGATCCAGAGGATGCTGGACATGCGGGTCAACCCAATTGAGGGCTTTTCTGCCAAGTGGGACTACAAGAACAAACAATGGAAGTAAATGAAGTAATGGAATGGACGGGATACTGTACTGAAATGAGGAGCGGTTGGACTTGACAACACCTTGAGCCTCTGTTTAGCCAACAGCCTCTCCTTCCACCATAGTGGCAAGCTACCCATCTGAatccatccccatactgtttaagtaaaaaattacaaaaaacg

Function

NR:

description
cytochrome c oxidase subunit 4 isoform 2, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947659.1 False 989 mRNA 0.49 5 69113016 69122652
XM_036947658.1 True 842 mRNA 0.50 5 69113016 69123466

Neighbor

gene id symbol gene type direction distance location
LOC110492630 LOC106566458 coding downstream 195590 68915576 ~ 68917426 (-)
LOC110491168 LOC106566483 coding downstream 216896 68894981 ~ 68896120 (-)
LOC118939478 LOC106566484 coding downstream 319688 68791189 ~ 68795025 (-)
LOC110492626 LOC106566459 coding downstream 340763 68703920 ~ 68772253 (-)
LOC110492627 LOC106566460 coding downstream 409413 68671413 ~ 68703603 (-)
LOC110492644 LOC106566447 coding upstream 231036 69354502 ~ 69379181 (-)
LOC110491170 LOC106566448 coding upstream 346950 69470416 ~ 69506016 (-)
LOC118939576 NA coding upstream 448387 69571853 ~ 69575843 (-)
LOC110491172 LOC106566442 coding upstream 454208 69577674 ~ 69666017 (-)
LOC118936543 LOC106566425 coding upstream 1003787 70127253 ~ 70133280 (-)
G1404937 NA non-coding downstream 4587 69108055 ~ 69108429 (-)
G1404930 NA non-coding downstream 19246 69092641 ~ 69093770 (-)
G1404920 NA non-coding downstream 36021 69071027 ~ 69076995 (-)
G1404898 NA non-coding downstream 77009 69035130 ~ 69036007 (-)
G1404897 LOC106566435 non-coding downstream 79860 69031193 ~ 69033156 (-)
G1404944 NA non-coding upstream 3994 69127460 ~ 69127726 (-)
G1404952 NA non-coding upstream 51231 69174697 ~ 69244266 (-)
G1404962 NA non-coding upstream 62277 69185743 ~ 69186013 (-)
G1404981 NA non-coding upstream 94367 69217833 ~ 69219097 (-)
G1405006 NA non-coding upstream 139648 69263114 ~ 69264104 (-)
G1403498 NA other downstream 1668837 67443421 ~ 67444179 (-)
G1402707 LOC106566505 other downstream 2618349 66484901 ~ 66494667 (-)
G1402686 srpk3 other downstream 2686694 66425551 ~ 66426322 (-)
LOC110492562 LOC106568106 other downstream 3358406 65715711 ~ 65754610 (-)
G1404974 LOC106566438 other upstream 79820 69203286 ~ 69207158 (-)
G1405016 nsfl1c other upstream 154361 69277827 ~ 69280359 (-)
G1405172 NA other upstream 394289 69517755 ~ 69518113 (-)
G1405917 NA other upstream 955191 70078657 ~ 70095541 (-)
LOC110492660 LOC106566428 other upstream 1096411 70216538 ~ 70221552 (-)

Expression


Co-expression Network