LOC110492644 (LOC106566447)


Basic Information

Item Value
gene id LOC110492644
gene name LOC106566447
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 69354502 ~ 69379181 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945796.1
tccccctctctctctctcctctcattatgCCTGCTGATCACTCTAGCTCTCCCCCTCTCATTATGCCTGCTGATCACtcaacctctccccctctctctcctctcattatgCCTGCTGATCACTACCTCTCCCTTTCTACCTCCCCGATCAGGTCtgtttcttcccctctctttctctcctctttctcctctcattaTGCCTGCTGAtcactctacctctccccctctctctcctctcattatgCCTGCTGAtcactctacctctccccctctctctcctctcattatgCCTGCTGATCACCCTACCTCTCCCCTTCTACCTCCCCAATCAggtctgtctcttcccctctctctctctcctctttctcctctcattaTGCCTGCTGAtcactacctctccccctctctctcctctcattatgCCTGCTGAtcactctacctctccccctctctctctcctctcattatgCCTGCTGATCACCCTACCTCTCCTTTTCTACCTCCCCGATCAggtctgtctcttcccctctctttctctcctctcattatGCCTGCTGATCACCCTACCTCTCCCCTTCTACCACCCCAATCAggtctgtctcttcccctctctcctctctcctctcattatgCCTGCTGATCAAtctatctctccctttctacCTCCCCAATCaggtctgtctctctcaatcCATCACTGATTGTCTCCCCAGACTGTGTACCTTGATCACTAGACAGACGGTGTACCTTGATCACTAGACAGACTTTGTACCTTGATCACTAGACAGACTGTGTACCTTGATCACTAGACAGACTGTGTACCTTGATCACTAGACAGACTGTGTACCTTGATCACTAGACAGACTGTGTACCTTCAGACCCATATCTTATAATTGGCCTTCACCCAACATTGCGATGAATTTCAACCTGAGCTTTGACAGCATGTTTATTAGGTCGTATTGAAAGATCAAAACAACTGTCTTGACAGACTTTATTTATTTAGGTTTAGTTTATTATCACTAAATCAAATACAGAATTGTTTTCTGTTGAAGCACAAACACTGCTCTCTCCCATCTCAGGCCTGTGGTCAGACGAATTAGTGGTGATTGGCTGCTTCTCCCTGATGTTCTGTCTGGCTgggctgatcccagatctgtgccatCCCTAGCCCCTGCCATCTTGTGTCAGCTCTCAGCACAATGCTGAGACATCCATAGTTCTCaccaagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacctcactGTCTTCTTCGTACTTGAATATAATAGCTTGTTTTGTTGGTTTAAAACAGTATGTGATGTCATGTCCTTCCACAGAGTCAGTACCTGTTTGCGTGTCGTTTTGTTTTCCTCTCAGGCTGGCTGTCACTGCAGAGTGATAGAGAGACACGGAGaaagacgaggagaggagagaggagcctcCATGTCTGCTCCTGTCCCTTCCAGTCGGAGATCTGCGTCTGGCTCACGCAGATTCAACCCTCTGAATCCTCTGCAGCCCAAACGCCGCTTGCAGCAAATGCTGTCGTCGTCCTCCTCGCCCGTACCCGTACCACTACCGACGCGCCCTGCACGGACAGCTGCCCCAGTCAGCAACAGAGATCCCCATGGCAATGCCTctctcagcagcagcagcactaactCTGGCTCCTGCAAGGGCAGTGACTGCAGCCCCACCAAGGGgcgTCATATGAAGGCATACACCTCGTGTAAAGATAACCATGGCATCCGCCCCCCTCCCCCAGAGCAGTACCTCACACCCCTGCAGCAGAAAGAGGTGTGTATCAGACACCTGCGGGCCCGCCTCAAAGAAACCGTCGACAGGCTGCAGGACAGGGACTCTGAGATCGACGAGTTGAGGACCCAGTTGTCTCGTATGCAGGAGGACTGGGTAGAAGAAGAGTGTCACCGCGTGGAGGCCCAGCTGGCTCTGAAGGAGGCGCGCAGGGAGATCCAGCAGCTCAAGGAAGTGGTGGACGTGGTGCGCACCAACCTCAACTCCAGCGACTCCACCGACACCGGCGTCCAGAAATACTTCCAGGACATCAACGTCCAGAACCACAAGCTGGAGACCCTGCTGCTCAGCATGGAGCTGGCTCAGAACGGGGTGGCCAAGGAGcaggaggctgctgctgcagcaCGAGGAGCGGCAGGGTGGGCTGGGAGGCCTGGGACTGCGGGGTCATGGCCTGGAAGTAGTCCCGCTGCATCAGGGACTGGATGGGGTGGTTCCAAGAGTCTGTGTGGGTCTTGTGACGGCTCCCCCGCCCGCTCTCTGCCCCGTAGCTTCACCTACACCAAGCTGAGCGACCACTCGCTGGCGGATAAGAACGGGAACAGCGTTTTAGGGGAGGAGAACCATGACAGTGGCTTTGTGTGCTGTGGGGAGAGTCGCAGTGCAGCCAACAGTCATAGTCACAGTCGCAGTGCAGCCAGCAGTCATAGTCACAGTCGCAGTGCAGCCAGCAGTCACAGGGCAGATCTGCTTCTGGAGGCAGCCTTCCTGTCTGAGGAGACAGCCTCTCTGCTCAGCACCTACTCCCTCCTGCCACACTTCTCCAACTACGACAAGCTGTGCCCCGGGAAGGACAGGGTGGCGCCCCTTCGCTGTGCCATGGGTGGGGCGGGCAGCGCCAGCCACCCCTGTCTGTCCCACCACCTTTACCTGCACCACCCCAGGGAGCAGGCTGTCCAGACAGAGAGCTGTCCCGTCCCCGGTGGGGTGGGCTACGCCTCTGACCTGGACACCATTGCGGAGCGCACATTCCGCTCTCAGGCCTGCAGCCCCACCTCCACCTGGGTCTCAGACGAGGGAGACGACCTGGACTCGGTTACCCCAACAACCCTCACAGCTACAACAGAGCCCGGTCCTGGCCCTCCGTTACCCAGCTCTTCCTGCCTCTTAGTTGATATGCCCTCCCTCTCagtggaggaggatggggaggcgGTGGGGGAGTTGGAGTGGCAGACAGCGGTAGTGGGGGAGAGTGCCGGGGTGATGGTAGAGGCAGGCAAGCAGGAGGAGGATGGGCGATTGGTACAATTATGTGAGCATGAGGAGGTAAGGGGCCTAGGGTTGCTAGGGGAAGGAAAGCAGGAGGAGGTAAAGGGTCTGGGGTTGCTGGGGGAAGGAAAGCAGGAGGAGGTAAAGGAGTTAGATGTAGATAGTCAGAGGGAGGAAGTGGAGGTGTGGtcggtggaggaggtggaggtgaggtcagtggaggaggtgaggtcagtggagggggaggaggtgagttcagtagaggtggaggaggtgagaTCAGTGGAGGAACGGCCCCACACCTCCCAGCCCATGAGAAGTTTGTTACAGCAGGAGGAGATCGCTGGGGTGACGGTGGTAGAggttgatgatgatgaagatcaGGCTCAGGGAGCAgtagggggagaagaggagtctACCTCGTCTGGGTCTGGACCAGCAGTGAAGAGCTACTGGAGCCGCCACTTCCTGGTTGACCTGCTGGCGGTGGCGGTACCCGTGGTGCCCACGGTGGCATGGCTGTGCCGGGGGCCGCGGGGCGATGCCCTGCCCATTTACCACTTCGGCTCCCTGCTACGTGGCTGCTGCACCGTGGCCCTCAGCTCCCTGCGCAGGGCCGGGGGCGTTAGGCACTACCCCGCAGGCACAGGTGGGGGAGCCATGGGAGGCACAGAGATCTGAGACAGGCCCCATGACACCCTGGGAGCTGCACACACATAACCCTGCCCTCTCTGGTCCTGGGTCGTCCTCCACCTGATGTACTGGGTAAAGGAATGAGTGGAGGAATGATTCTGAAGACAGGACAGCCTCCTAGCAAACCATATAACTCTCTCCTTTGAGCCTTGCTCCTGGtgacctcttccacctcctctgcTGAACTGAGAAGAGACACCGGGATGTGTTGAAGTGACACTGAATGGTAGAACTGAACGATTGAATGGACACTGAATGACCTGAGGGTGTGATTGATGCTGATTGTAACTTCTCTCTCTAGTGTGCAGGGAGACTGAATGGTCTGTCAGTCTCTGTGAGTCTCTTCATTTGGTCCAGTTCAATTTTGACTCGTGGTGTGTAAGTAT

Function

NR:

description
syntaphilin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945796.1 True 4119 mRNA 0.56 6 69354502 69379181

Neighbor

gene id symbol gene type direction distance location
LOC110492636 LOC106566437 coding downstream 231036 69113016 ~ 69123466 (-)
LOC110492630 LOC106566458 coding downstream 437076 68915576 ~ 68917426 (-)
LOC110491168 LOC106566483 coding downstream 458382 68894981 ~ 68896120 (-)
LOC118939478 LOC106566484 coding downstream 561174 68791189 ~ 68795025 (-)
LOC110492626 LOC106566459 coding downstream 582249 68703920 ~ 68772253 (-)
LOC110491170 LOC106566448 coding upstream 91235 69470416 ~ 69506016 (-)
LOC118939576 NA coding upstream 192672 69571853 ~ 69575843 (-)
LOC110491172 LOC106566442 coding upstream 198493 69577674 ~ 69666017 (-)
LOC118936543 LOC106566425 coding upstream 748072 70127253 ~ 70133280 (-)
LOC118939578 NA coding upstream 806194 70185375 ~ 70187858 (-)
G1404993 NA non-coding downstream 587 69351717 ~ 69353915 (-)
G1404991 LOC105013763 non-coding downstream 42239 69305727 ~ 69312263 (-)
G1405017 NA non-coding downstream 68895 69284975 ~ 69285607 (-)
G1405010 NA non-coding downstream 82027 69272267 ~ 69272475 (-)
G1405006 NA non-coding downstream 90398 69263114 ~ 69264104 (-)
G1405067 NA non-coding upstream 36795 69415976 ~ 69416177 (-)
G1405076 NA non-coding upstream 44057 69423238 ~ 69423487 (-)
G1405104 NA non-coding upstream 70081 69449262 ~ 69449564 (-)
G1405107 NA non-coding upstream 76005 69455186 ~ 69455456 (-)
G1405138 NA non-coding upstream 89176 69468357 ~ 69468876 (-)
G1405016 nsfl1c other downstream 74143 69277827 ~ 69280359 (-)
G1404974 LOC106566438 other downstream 147344 69203286 ~ 69207158 (-)
G1403498 NA other downstream 1910323 67443421 ~ 67444179 (-)
G1402707 LOC106566505 other downstream 2859835 66484901 ~ 66494667 (-)
G1405172 NA other upstream 138574 69517755 ~ 69518113 (-)
G1405917 NA other upstream 699476 70078657 ~ 70095541 (-)
LOC110492660 LOC106566428 other upstream 840696 70216538 ~ 70221552 (-)
G1406228 NA other upstream 1356466 70735647 ~ 70742179 (-)
G1406514 NA other upstream 1881141 71260322 ~ 71260817 (-)

Expression


Co-expression Network