LOC110492652 (LOC106566422)


Basic Information

Item Value
gene id LOC110492652
gene name LOC106566422
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 70096449 ~ 70111837 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947682.1
taaattgcTGTCACTAGGTGacactagctaactagctagcactCTCAACACATTTTGATGCTAATGGGGATCACGTGACGTCACGAATGACACGTGTATTCAAGATGGCGGCCGCGGCGATGGAGACGTGGTTGGCCCTGCTGCTGTTGTCCATGTTGCCTGGAGGGGTCCAGCCCTTTTACGTGCCTGGAGTTGCTCCTATGAACTTCCACCAGAACAGTGCTGTAGAGATTAAGGCCGTGAAGCTGACCAGCTCCAGGACTCAGCTTCCCTATGAATACTACTCCCTGCCCTTCTGTCAGCCTGATAAAGTGGTCTACAAAGCAGAGAACCTGGgggaGGTGTTACGTGGGGATCGTATTGTGAACACCCCCTACTCGGTACTCATGACCCAGGACAGGAAGTGTAAGGTGGTTTGTGCCAAGCTGAAACTCAACGTGCAGCAAAGCAAGCTGGTGGCTGAGCGCATCCAGGAAGAGTACTATGTTCACCTCATCGCAGACAACCTCCCAGTGGCCACGCGACTGGAGTTCTACCCCAAcaaagaggcagaggaggagaaggatgtGGTGAAGGATGTTCAGTTTGAACACGGCTACAGACTGGGCTTCACTGAGAGCAGCAAGTTCTACCTTCACAACCACCTGTCTTTCATCATCTACTACCACAAGGAGaagctggaggaggaggaagagcacAACTACAGAGTTGTACGTTTTGAGGTGGTTCCCCAGAGTGTGAAGGTGGAGGACCTGAAGGCTGATAAGGGGTTGTGTACCCTGCCTGAGGCCACTAACTCAGCTCCTCAGGAGATTGACCCCTCCAAGGAGAATGAGGTTCTCTTCACCTACTCTGTCCGCTGGGAGgaGAGCCAGGTGAAGTGGGCATCTCGCTGGGACACCTACCTGACCATGAGTGACGTGCAGATCCACTGGTTCTCCATCGTCAACTCAGTGGTGGTGGTCTTCTTCCTCTCTGGGATCCTCAGTATGATCATCATCAGGACCCTGAGGAAGGACATTGCCAACTACAACAGAGAGGATGACATAGAGGACACCATGGAGGAGTCGGGCTGGAAGAATGTCCATGGTGACGTGTTCAGACCTCCACAGTATCCCATGATCCTCAGCTCTCTGCTGGGCTCTGGCATACAGCTCTTCTGCATGATTCTCATCGTCATCTTCGTGGCCATGTTGGGGATGCTGTCTCCTTCCAGTAGAGGGGCCCTGATGACCACTTCCTGCTTTCTGTTCATGTTCATGGGTGTGTTCGGTGGATACTTCGCTGGCAGACTCTACCGCACCCTGAAAGGTCATCGGTGGAAGAAGGGTGCTTTCTGTACGGCCACTCTGTACCCGGCTGTGGTCTTCTCCATCTGCTTCGTCCTCAACTGTTTCATCTGGGGAGAGCACTCTTCTggagctgtccccttcaccaccatgCTGGCTCTACTCTGCATGTGGTTCGGTATCTCCATGCCGCTGGTCTACTTGGGCTACTACTTTGGCTTCCGCAAGCAGCCGTACGATAACCCCGTCCGCACCAATCAGATCCCTCGCCAGGTGCCTGAGCAGCGCTGGTACATGAACAAGTTTGTGGGAATTCTGATGGCTGGGATTCTACCGTTTGGTGCCATGTTCATTGAACTCTTCTTCATTTTCAGTGCCATCTGGGAGAACCAGTTCTACTACCTGTTTGGTTTCCTCTTCCTGGTGTTCATCATCCTGGTGGTGTCCTGCTCCCAGATTAGTATCGTCATGGTCTACTTCCAGCTCTGTGCGGAGGActaccggtggtggtggaggacctTCCTGGTATCAGGGGGCTCAGCCTTCTACGTTCTTGTTTACGCCATTTTCTACTTTGTCAACAAGCTGGACATCGTGGAGTTTATTCCTTCCCTGTTGTACTTTGGCTACACGGCTCTCATGGTCCTGTCCTTCTGGCTCCTTACAGGGACCATCGGTTTTTACGCAGCGTACATGTTCATACGGAAGATCTACGCTGCCGTCAAAATCGACTGAGTTTGTTTCTGctgcttttctttattttttgttgCCACATTTTCTTGTTCGGTTTTAATTTTTGTCTTCTTCGTGTCCAGCAAACACTGACTTCTGTGTATGGAAGGAAGGAAGCATGAGGTGGGTTTTGTGGAACAGTGCCACCCACAGGCATAGGGAGAGAACAGCAAGATGATGCTGCCTGCTAGCTCGacgctccccccctccctccgttATTGGTGTCCACAGAGACAGAGTTCCTCTGGGACAGTCCATGTTTTTCCTGTGGTTCACCTTGGACGCAACATGGGCCAAAGCATGTCAATTGAATTGAGTCTCTGTGTGTTTTAGTGTCTCTGCTTTTTTTGGAAGTTGGACAATCAATGAAGTGCATTGGTTCAGAACTTCACTTCGTTTTAAAATCAGTTCTCTGTAAAGATGTTTTAGTCTGACCTatgtctctgtttctttctcgctctctctgtctttcggtctctctgtgtctgtcggtctctgtgtgtgtgtgtctctctgtctgtgtgttagttAGTAAGGTTAGTTTATTTGAGTTTATAATCTTTATTCCAGATGGTTGGGAGGTCACATGGTGGTAATGGCACTAAAAATTATTTTGTTTAGTTTGGAAATGGAAATGTGACATTGGAACAAGGATATTACAGTATTCTGTTTTTATTGCGGTTTCCATGTCCTGATGTGACCATTTCAACCACAACTAAAAAAATCAGAATCtaaatgtttttcctggagagagaAAACAATCTCTCACATTGAGGTAACCGATTGTGTAAAAGGAAATTCTCCTCCGTGATCAATTAATCTGATGTTGCTAGGGAAGTCGAGGCTTAAGGTGGTTTTAAATATTAAATGTTatggaacaaaaaaaaaagtcaatGTTGATGGAAAAGTAGCATTTCTCATCTTCAAATCACCTTTTCTAGTTTATGAGCTTTAGCCTTAGGGAAAAACGACTTGTTTAAAAACGGTTGGACACCATTACATTACGAGTCAATGTAAACAGCTCCATGGTCTCACTGAACTATGCattttttttgaggggggggAGGGGTGAGATTGATGTTTTGTTTTGAACACCTAGTTCAGTGAGACACACCTGCTATTCTAACAGAAGTTATCGGTGTCGGGTTATCCCTGAGCATCAATGTCTCTACAAGGATCGCCTTAGCAACACAGAGTTCTGTCAATGAGCCTCTGAATGGAGCACAGTTGTTTCCCATAAACAACCTCTAAATTAAGGACGCTTGTGTTTCCCATAAACAACAGGCCCAATCA

Function

NR:

description
transmembrane 9 superfamily member 4

GO: NA

KEGG:

id description
K17086 TM9SF2_4; transmembrane 9 superfamily member 2/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947682.1 True 3314 mRNA 0.48 17 70096449 70111837

Neighbor

gene id symbol gene type direction distance location
LOC110492657 hck coding upstream 1182 70078693 ~ 70095267 (+)
LOC118939577 LOC106566421 coding upstream 27123 70043248 ~ 70069326 (+)
LOC110492659 LOC106566420 coding upstream 100051 69986177 ~ 69996398 (+)
LOC110492656 LOC106566444 coding upstream 400046 69693022 ~ 69696403 (+)
LOC118939480 NA coding upstream 667608 69428060 ~ 69428841 (+)
LOC110492666 NA coding downstream 79955 70191792 ~ 70194430 (+)
LOC110492650 LOC106566426 coding downstream 86601 70198438 ~ 70212716 (+)
LOC110492655 LOC106566410 coding downstream 268492 70380329 ~ 70394365 (+)
si:ch211-148l7.4 LOC106566411 coding downstream 282948 70394785 ~ 70402610 (+)
snrpg LOC106572841 coding downstream 291486 70403323 ~ 70411425 (+)
G1405584 NA non-coding upstream 42822 70052589 ~ 70053627 (+)
G1405575 NA non-coding upstream 59246 70034464 ~ 70037203 (+)
G1405569 NA non-coding upstream 78443 70017481 ~ 70018006 (+)
G1405545 NA non-coding upstream 130682 69965546 ~ 69965767 (+)
G1405540 NA non-coding upstream 137576 69958066 ~ 69958873 (+)
G1405603 NA non-coding downstream 12333 70124170 ~ 70125683 (+)
G1405604 NA non-coding downstream 14504 70126341 ~ 70128867 (+)
G1405606 LOC106566425 non-coding downstream 20842 70132679 ~ 70133504 (+)
G1405607 NA non-coding downstream 22040 70133877 ~ 70134101 (+)
G1405613 NA non-coding downstream 31003 70142840 ~ 70143146 (+)
G1405310 LOC106566443 other upstream 423775 69671464 ~ 69672674 (+)
G1405218 NA other upstream 509543 69585989 ~ 69586906 (+)
G1405216 NA other upstream 512823 69580729 ~ 69583626 (+)
G1404827 NA other upstream 727073 69364521 ~ 69369376 (+)
fkbp1ab LOC100705189 other upstream 784186 69305670 ~ 69312263 (+)
G1405605 LOC106566425 other downstream 18084 70129921 ~ 70132301 (+)
G1405676 NA other downstream 144985 70256822 ~ 70257430 (+)
G1406381 NA other downstream 857778 70969615 ~ 70972604 (+)
G1406424 NA other downstream 1090605 71202442 ~ 71206092 (+)
G1406505 NA other downstream 1098435 71210272 ~ 71210764 (+)

Expression


Co-expression Network