LOC118936543 (LOC106566425)


Basic Information

Item Value
gene id LOC118936543
gene name LOC106566425
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 70127253 ~ 70133280 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947683.1
agagagggagagagagagagagaaagagagagggagagagagagagcccccccccccccaacggcCTACCCGCCCCGCCTGGAGCCACGCCCTTCACTGCAACCAACCACTGCTCACGTAGAGCCTGGAAGGCAGGGGAGCCACGGCCGGGATTTCATGGCAACAGCACCCTAGGGCTGCCATGGCAGCTGCTGCCGCGGATGCCCCACGCCATATTACCACACTGACGCCGGAGGACGAGGAAGGAAGAGCCGCTGCCAAGCTGTACGGAGGCACTACCCTgccacggacagagagagagagagaacgagagagggaagaGCGAGCCAGTGGAAACGAGTGTTTGGTGTGTGGGACTTGGTTTGGTTCCCAGGATAAACTTCGGCTTCACTCTTTCTGTCACACGGGAGAGAAACCATTCCACTGCTCCCAGCCACACTGTCCTAAGGCCTTCAGCTCCAAATATAAACTGTTCAGGCATATGGCCACACACTCTCCGCAGAAAACTCACCAGTGCTCGTTCTGCGAGAAAATGTTTCACCGCAAAGATCACCTGAAGAACCACCTGCAGACCCATGACCCCAACAAAGAGGCCTTCAAGTGTGAGGAATGTGGCAAGCACTACAACACCAAGCTGGGCTACAAGCGTCATGTGGCCATGCATTCAGCCACGGCTGGGGACCTCACCTGTAAGGTGTGCCTGCAGAGCTACGAGAGTACCCCTGCCCTGATGGAGCATCTCAAGAGCCACTCGGGCAAGTCCTCCGGAGGTGCCAAGGAGAAGAAGCATCCGTGTGACCACTGTGACCGCCGCTTCTACACACGGAAGGACGTGCGTCGCCACATGGTGGTCCACACTGGCAGAAAGGACTTCCTGTGTCAGTACTGCGCCCAGCGCTTCGGCAGGAAGGACCACCTGACGCGGCATGTGAAGAAGAGCCACTCTCAGGAGCTGCTGAAGATAAAGACTGAGCCTCCGGACATGCTAGGCCTGCTGGGCTCTGGCTCCTCCCCCTGCACTGTCAAAGAGGAGCTCAGCCCCATGATGTGCAGCATGGGTTCCAACAAAGACCCCATGCTGGCCAAGCCATTCCCCAGTGGCACCTCCTTCCCCATGGGCATGTACAACCCCCACCACCTCCAGGCCATGTCCAACCCTGGGGTGGGCCACCACCACTCTCTGATGCCTGGCTCCTTGTCCACTGCCATGGGGATGGGCTGCCACATGGAGccccccatccaccacccccatcacccgcaccaccaccaccaccaccactaccatcaccaccacatcCAACACTCCCCCCCGCTGCCCCACCTGCAGCAGCCCCAACAGCACCAGCAGCAACAGCACGCCCAGCCTCCACCCAAGTACCAGCTGGGATCTACCTCATACCTGCTGGACAAGCCCCTCAAAGTGGAGATGGAGAGCTTTCTCATGGATCTGCAGAGTGGGCTGCCGGGCCACCACTCAGGCGATCATCATCATGCTGCTGCCTCGCCCCCCAAGGAGGGACTAGAGCACCCCTCAGGCCTGACAGACGAGCTGTGTGGTGACCCCCTCCTGTCCAAGAGCCCTGCTGTCATCGCTGAGGCTCTGTGCGCTGCTAACATGGACATCTCTCACCTACTGGGCTTCCTGCCCCTCAACCTGCCCCCCAACCTGCCCCCCTACAACGCCTCCATGAGCACAGCAGGGCTTGTCATGAGCTACACCTCGTCtacccctgcctcctcctcttcctcctcttcgtcaTCCTCATCCTTGCATGCTGCCGAGCCCCACACCGTTGCCACGGCTGCAGCCGCACCTCTTACCTCTTTGCAACCTCAACCTCAGGAGCAGCATGGCTCCAGCGAGGGCCTGGGTCTAGGGCCCCTGCACCCTCTCCCGCCAGTGTTTAGCTCCAGCCTCAGCACGACCACCCTGCCTCGCTTTCACCAGGCCTTCCAATGAGGGGCCACCAGGTCCCTACGCCTTCATCCTCAGCTCACTGCCTGGGCGCCCAAGGTCCATGGGGCCTGCTGGCCGCAAGGGCAGTGATAAAAACACATGAACACTTAGAAGCCTTAATCGAATCACACAAAAGCTTTTGATTGAGCCCAGAGAAAACTGAACCCTTTATTGAAACAAAAGGAAAAAGATGAGACATTTTAAAACAAACTTTCTTTCTATCCTTTAGTTATAACCTCTCCCACCAACCTATCTCCCTGATCCATGATCCCCTCTCCCACCAACCTATCTCCCTGATCCATGATAACCTCTACCACCAATGTATCTCCTTGATCCATGATCCCCTCTCCCACCAACCTATCTCCCTGATCCATGATCCCCTCTCCCACCAACCTATCTCCCTGATCCATGATCCCCTCTCCCTTTATTATGTAGGTAGTAGGCAGTAGGCCTTCAGTAGGCCTTCAGTAGGCCTTCAGTAGGTCTTCATTAGCCTTCAGTAGGCCTTCAGTAGGCCTTCAGTAGGCCTTCAGTAGGTCTTCAGTAGCCTTCAGTAGGTCTTCATTAGGCCTTCAGTAGGCCTTCAGTAGGCCTTCAGTAGGTCTTCAGTAGCCTTCAGTAGGCCTTCAGTAGGCCTTCAGTAGGTCTTCAGTAGCCTTCAGTAGGCCTTCAGTAGGCCTTCAGTAGGCCTTCAGTAGGTCTTCAGTAGCCTTCAGTAGGCCTTCAGTAGGCCTTCAGTAGGTCTTCAGTAGCCTTCAGTAGGCCTTCAGTAGGCCTTCATTAGGCCTTCAGTAGGCCTTCAGTAGGTCTTCAGTAGCCTTCAGTAGGCCTTCAGTAGGCCTTCAGTAGGCCTTCAGTAGACCTGAAGGTACCGCTACTTTATAAAGTAATAATATTAGGAAAAATAATCAAAGATTAATTTTAGAGAAGATGTTTTGAAGTGGATGAAATATAATTTTCTTGCTTTTCCAAATGTGACTGAACATGCTAGATTATCTCTCCTATGAGTTTAAAGGTCTGAACCACCTGCCCAGAAACACACCCTGTCTGTCATCATCACCGTCAGGGGGAAAACACACCCTGTCTGTCATCATCACCGTCAGGGGGAAAACACACCCTGTCTGTCATCATCACCGTCAGGGGGAAAATATACCCTGTCTGTCATCATCACCGTCAGGGGGAAAATATACCTTGTCTGTCATCATCACCGTCAGGGGGAAAACACACCCTGTCTGTCATCATCACCGTCAGGGGGAAAACACACCCTGTCTGTCATCATCACCGTCAGGGGGAAAATATACCTTGTCTGTCATCATCACCGTCAGGGCGAAAATACACCTTGTCTGTCATCATCACCGTCAGGGGGAAAATACACCCTGTCTGTCATCATCACCGTCAGGGGGAAAACACACCCTGTCTGTCATCATCACCGTCAGGGGGAAAACACACCCTGTCTGTCATCATCACCGTCAGGGGGAAAACACACCCTGTCTGTCATCATCACCGTCAGGGCGAAAACACACCCTGTTTGTTATCATCACCGTCAGGGGGAAAACACACCCTGTCTGTCATCATCACCGTCAGGGGGAAAACACACCCTGTCTGTCATCATCACCGTCAGGGCGAAAACACACCCTGTCTGTCATCATCACCGTCAGGGGGAAAACACACCCTGTCTGTCATCATCACCGTCAGGGGGAAAACACACCCTGTCTGTCATCATCACCGTCAGGGCGAAAATACACCTTGTCTGTCATCATCACTGTCAGGGGGAAAATACACCCTGTCTGTCATCATCACCGTCAGGGGGAAAACACACCCTGTCTGTCATCATCACCGTCAGGGCGAAAATACACCCTGTCTGTCATCATCACCGTCAGGGGGAAAACACACCCTGTCTGTCATCATCACCGTCAGGGGGAAAACACACCCTGTCTGTCATCATCACCGTCAGGGGGAAAACACACCCTGTCTGTCATCATCACCGTCAGGGGGAAAACACACCCTGTCTGTCATCATCACCGTCAGGGGGAAGATTAATGAAGGAATGAAGTGATAATGCCCCGCCAACATTGCCCTCATCCAATAGGCCAACATTGCCCTCCTCCAATAGGCCAACATTGCCCTCATCCAATAGGCCAACATTGCCCTCCTCCAATAGGCCAACATTGCCCTCATCCAATAGGCCAACATTGCCCTCATCCAATAGGCCAACATTGCCCTCATCCAATAGGCCAACATTGCCCTCCTCCAATAGGCCAACATTGCCCTCCTCCAATAGGCCTACATTGCCCTCCTCCAATAGGCCAACATTGCCCTCATCCAATAGGCTACAACCACACTAAAAATATCTCAGAGAAAGACTCGAACAACTGATTAATGTTATGACTCATAGAGGCAGATCATTTGTCCAGAAAGTATGATAACCAACGCTGCCAAACACAGCAACCAGTGGCGCCCACATATTTAATGACAAAGATATGTGAAAACATCTGAGTCGGTAGAAAACATGCCAAGTCATGCCGGTTTTATCTGGTTTTTCTAGAgaagcatttattttatttttttttggcaGAAGGCTCTTCCCCTTTAAGAATCCCTTTGGCTAGCTCTCAGTGATGATGACCCTATATGGGGAAGGCTCTTCACCTGTAAGATTCTCTTTGGCTAGCTCTCAGTGATGATGACCCTATATGGGGAAGGCTCTTCACCTTTAAGATTCTCTTTGGCTAGCTCTCAGTGATGATGACCCTATATGGGGAAGACTCTTCCCCTTTAAGAATCCCTTTGGCTAGCTCTCAGTGATGATGACCCTATATggggaaaaaaaaaacaacttgtaAAAGCTGCTCTTGAAAACAGGTCAAATTACCAGTATTTGACTCATGATGATTTTCCTTCCTTCAACTGTCTTCCTTCCAGTATTTGTTTTAAGAAGTCTCCATGGTAACAATATGCCACACATTActgatatgtattttttttttgttgttgaagaaaacaaatatattttctcTCTGTTAGAGATGCATGGTAATAACCACCCTGACATATGTGAATAGCAAACAAAAATGACAACGACGACATTGAGGAAAACGTGTAAGAGAATGTTATTGCAGTGTACAAAATATCTCATCAAAAATGAATATTATTATTGCTTTTATCTCAGTAAGGTGTACAAAGTGATGATGTTTAATGTCTGGCAggtttacatttgtgtgtatctGACATTTTATTGCTCAAAAAAAGGATGAATTATTAGCTTTGCCCTTTAGCTTTTCTCCTCTGTATTCATTATTGATCTTGATCTTTAACTTGATATTTGCCTTGATCTTGAACTTTACCTTGATCTTGAACTTTACCTTGATCTTGAACTTTACCTTGATCTTAACCTTTACCTACTTGAGTTAGTAGCAGAAACTTGGATTGTGGATTTTGACAAATGTTTTAGTAGGCTGTTAGTGGAATAATACTGAAATAACAGTCAACATAGATAACATTGATAGACTCTCCAGTTTCAATTCATTCTCTACTTTCTCAGTATGAAACCCAACCTGACCCTAAGTAAACGAAGCGATCCGA

Function

NR:

description
PREDICTED: zinc finger protein PLAGL2-like isoform X1

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
K19486 PLAGL2; zinc finger protein PLAGL2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947683.1 True 5539 mRNA 0.50 2 70127253 70133280

Neighbor

gene id symbol gene type direction distance location
LOC110491172 LOC106566442 coding downstream 461236 69577674 ~ 69666017 (-)
LOC118939576 NA coding downstream 551410 69571853 ~ 69575843 (-)
LOC110491170 LOC106566448 coding downstream 621237 69470416 ~ 69506016 (-)
LOC110492644 LOC106566447 coding downstream 748072 69354502 ~ 69379181 (-)
LOC110492636 LOC106566437 coding downstream 1003787 69113016 ~ 69123466 (-)
LOC118939578 NA coding upstream 52095 70185375 ~ 70187858 (-)
LOC110492660 LOC106566428 coding upstream 83258 70216538 ~ 70221552 (-)
LOC110492649 LOC106566409 coding upstream 96559 70229839 ~ 70282239 (-)
tmed4 LOC106566412 coding upstream 289149 70422429 ~ 70426035 (-)
LOC118939579 NA coding upstream 324641 70455694 ~ 70552795 (-)
G1405933 NA non-coding downstream 959 70126051 ~ 70126294 (-)
G1405918 NA non-coding downstream 13372 70112899 ~ 70113881 (-)
G1405954 NA non-coding downstream 20291 70104852 ~ 70106962 (-)
G1405920 NA non-coding downstream 89862 70034724 ~ 70037391 (-)
G1405912 NA non-coding downstream 100768 70024699 ~ 70026485 (-)
G1405919 NA non-coding upstream 1490 70134770 ~ 70135100 (-)
G1405958 NA non-coding upstream 4107 70137387 ~ 70137737 (-)
G1405985 NA non-coding upstream 89882 70223162 ~ 70226004 (-)
G1406075 NA non-coding upstream 256328 70389608 ~ 70394300 (-)
G1406091 LOC106566414 non-coding upstream 318955 70452235 ~ 70453318 (-)
G1405917 NA other downstream 31712 70078657 ~ 70095541 (-)
G1405172 NA other downstream 609140 69517755 ~ 69518113 (-)
G1405016 nsfl1c other downstream 846894 69277827 ~ 69280359 (-)
G1404974 LOC106566438 other downstream 920095 69203286 ~ 69207158 (-)
LOC118939478 LOC106566484 other downstream 1332228 68791189 ~ 68795025 (-)
G1406228 NA other upstream 602367 70735647 ~ 70742179 (-)
G1406514 NA other upstream 1127042 71260322 ~ 71260817 (-)
G1406752 NA other upstream 1369199 71501118 ~ 71547366 (-)
G1406760 NA other upstream 1406678 71539958 ~ 71543469 (-)

Expression


Co-expression Network