LOC110492666


Basic Information

Item Value
gene id LOC110492666
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 70191792 ~ 70194430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469055.2
CAATTTAAGTTTTAGTGATGCAGCTGAACAAGGAGATCAGCACCTCGGGGGTTAAACTTTTTTTCAGTATCCAATGCATTCTGGGATGTGAGAATGAAGCGCAATGGCGGCGAAACTGAATCACTTGCAACTTTTTTTGTGGTCGATTTGGAAACCAAGCCGACTACTTTCTGGGGTCTTTGACATTCGCAAAAATGCTGAGTTGCACAATGGCAGTGTGCCGCCACCACGCTCCTCCAGAATCaaatgtagttagttagttagttagttcttCCAGCTAGAGGCCCTGACTCACTCCCACTGCGTGGTAAGCCTAGATGACTTGATGAAGCAACTGGCCCCAACACTGGCCTAAGGGCAGCCTACTTAGTCAGCTGCACAGAGGAGTGTAAAGACAAGAAGTCCTGCCCCATGAAGGTGAAGGTGGTGAGCTTCAAGCCAGACTTGGCCCAGATGGACTTGTACATCATAAGCCAGCCTGACCACTTCGTTGGGGATCGTGTGTCCTCCTCCTTCCTGCTTTTGTCAAACAAGACCGTGATGTCCATGCCCGGCCGTCGTCTTTCTTCGGGAAGGGACTAAGCTGGAAAATGTAACAAGCAAGACGAGCTGTGAAGATTTTGCCCTTCCTGGGGAGTCCATGACAAATTGCTTTTAGAATGGCTTTTTAATCTTGGGTGAGGAGGAGGACATTGCAGTGTAGGAATGTGATCCATACTCACTATTACAGTGATGTAGtgataaaaatgttttttagtCAACTCTGATCACCGCTCGCGGTAAATAAAGTAAAGCTCCCATTTTGTTTCCTCTAAACCCTTACGCAAAATAATGCATGTGTGTTTACCCTCCACAACACCACTGCTATTAAACAAGCAGTAGCATCATTACACACGCTGTATACATGACATTATTATACTCTTCATAGCATCAacaatccaggctgcatcacatccggcaatgattggtagtcccatagggcggcgcccaattggcccagcgtcgcctggGGTttgccagggtaggccgtcattgtaaataagaatttgttcttaactgattttcctagttaaatagaggttcaataaaaaaaaaagttcaatttCCGCAATAACTTCTAtgctgcacaacgcatcaccgggggcaaactacctgccctccaggacacctacaccacccgatgtcacaggaaggccataaagatcatcaaggacaacaaccacccgagccactgc
>XR_002469054.2
CTTTTTTTCAGTATCCAATGCATTCTGGGATGTGAGAATGAAGCGCAATGGCGGCGAAACTGAATCACTTGCAACTTTTTTTGTGGTCTGTTATTTCCTTACAGCAATATTGCTACAAATTAGTCTAACGTTTGCTACAGAGTTAACGTGTGACGACAACATTTTATATTGTCCTTGCATGGGTCGATTTGGAAACCAAGCCGACTACTTTCTGGGGTCTTTGACATTCGCAAAAATGCTGAGTTGCACAATGGCAGTGTGCCGCCACCACGCTCCTCCAGAATCaaatgtagttagttagttagttagttcttCCAGCTAGAGGCCCTGACTCACTCCCACTGCGTGGTAAGCCTAGATGACTTGATGAAGCAACTGGCCCCAACACTGGCCTAAGGGCAGCCTACTTAGTCAGCTGCACAGAGGAGTGTAAAGACAAGAAGTCCTGCCCCATGAAGGTGAAGGTGGTGAGCTTCAAGCCAGACTTGGCCCAGATGGACTTGTACATCATAAGCCAGCCTGACCACTTCGTTGGGGATCGTGTGTCCTCCTCCTTCCTGCTTTTGTCAAACAAGACCGTGATGTCCATGCCCGGCCGTCGTCTTTCTTCGGGAAGGGACTAAGCTGGAAAATGTAACAAGCAAGACGAGCTGTGAAGATTTTGCCCTTCCTGGGGAGTCCATGACAAATTGCTTTTAGAATGGCTTTTTAATCTTGGGTGAGGAGGAGGACATTGCAGTGTAGGAATGTGATCCATACTCACTATTACAGTGATGTAGtgataaaaatgttttttagtCAACTCTGATCACCGCTCGCGGTAAATAAAGTAAAGCTCCCATTTTGTTTCCTCTAAACCCTTACGCAAAATAATGCATGTGTGTTTACCCTCCACAACACCACTGCTATTAAACAAGCAGTAGCATCATTACACACGCTGTATACATGACATTATTATACTCTTCATAGCATCAacaatccaggctgcatcacatccggcaatgattggtagtcccatagggcggcgcccaattggcccagcgtcgcctggGGTttgccagggtaggccgtcattgtaaataagaatttgttcttaactgattttcctagttaaatagaggttcaataaaaaaaaaagttcaatttCCGCAATAACTTCTAtgctgcacaacgcatcaccgggggcaaactacctgccctccaggacacctacaccacccgatgtcacaggaaggccataaagatcatcaaggacaacaaccacccgagccactgc
>TU1605404
ATGAAGCAACTGGCCCCAACACTGGCCTAAGGGCAGCCTACTTAGTCAGCTGCACAGAGGAGTGTAAAGACAAGAAGTCCTGCCCCATGAAGGTGAAGGTGGTGAGCTTCAAGCCAGACTTGGCCCAGATGGACTTGTACATCATAAGCCAGCCTGACCACTTCGTTGGGGATCGTGTGTCCTCCTCCTTCCTGCTTTTGTCAAACAAGACCGTGATGTCCATGCCCGGCCGTCGTCTTTCTTCGGGAAGGGACTAAGCTGGAAAATGTAACAAGCAAGACGAGCTGTGAAGATTTTGCCCTTCCTGGGGAGTCCATGACAAATTGCTTTTAGAATGGCTTTTTAATCTTGGGTGAGGAGGAGGACATTGCAGTGTAGGAATGTGATCCATACTCACTATTACAGTGATGTAGtgataaaaatgttttttagtCAACTCTGATCACCGCTCGCGGTAAATAAAGTAAAGCTCCC

Function

NR:

description
PREDICTED: GDP-fucose protein O-fucosyltransferase 1 isoform X1

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469055.2 False 1235 mRNA 0.46 3 70191792 70194430
XR_002469054.2 False 1276 mRNA 0.46 3 70191848 70194430
TU1605404 True 474 lncRNA 0.48 2 70192545 70193994

Neighbor

gene id symbol gene type direction distance location
LOC110492652 LOC106566422 coding upstream 79955 70096449 ~ 70111837 (+)
LOC110492657 hck coding upstream 96525 70078693 ~ 70095267 (+)
LOC118939577 LOC106566421 coding upstream 122466 70043248 ~ 70069326 (+)
LOC110492659 LOC106566420 coding upstream 195394 69986177 ~ 69996398 (+)
LOC110492656 LOC106566444 coding upstream 495389 69693022 ~ 69696403 (+)
LOC110492650 LOC106566426 coding downstream 4008 70198438 ~ 70212716 (+)
LOC110492655 LOC106566410 coding downstream 185899 70380329 ~ 70394365 (+)
si:ch211-148l7.4 LOC106566411 coding downstream 200355 70394785 ~ 70402610 (+)
snrpg LOC106572841 coding downstream 208893 70403323 ~ 70411425 (+)
plpbp prosc coding downstream 217246 70411676 ~ 70422505 (+)
G1405645 NA non-coding upstream 3340 70187507 ~ 70188452 (+)
G1405613 NA non-coding upstream 48646 70142840 ~ 70143146 (+)
G1405607 NA non-coding upstream 57691 70133877 ~ 70134101 (+)
G1405606 LOC106566425 non-coding upstream 58288 70132679 ~ 70133504 (+)
G1405604 NA non-coding upstream 62925 70126341 ~ 70128867 (+)
G1405663 NA non-coding downstream 27928 70222358 ~ 70222646 (+)
G1405630 NA non-coding downstream 28782 70223212 ~ 70231898 (+)
G1405676 NA non-coding downstream 62392 70256822 ~ 70257430 (+)
G1405678 NA non-coding downstream 64207 70258637 ~ 70259033 (+)
G1405605 LOC106566425 other upstream 59491 70129921 ~ 70132301 (+)
G1405310 LOC106566443 other upstream 519118 69671464 ~ 69672674 (+)
G1405218 NA other upstream 604886 69585989 ~ 69586906 (+)
G1405216 NA other upstream 608166 69580729 ~ 69583626 (+)
G1404827 NA other upstream 822416 69364521 ~ 69369376 (+)
G1406381 NA other downstream 775185 70969615 ~ 70972604 (+)
G1406424 NA other downstream 1008012 71202442 ~ 71206092 (+)
G1406505 NA other downstream 1015842 71210272 ~ 71210764 (+)
G1406507 NA other downstream 1019947 71214377 ~ 71216430 (+)

Expression


Co-expression Network