LOC110492660 (LOC106566428)


Basic Information

Item Value
gene id LOC110492660
gene name LOC106566428
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 70216538 ~ 70221552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947689.1
actgaaaggtggggggggggttcaatgcaaatagtctgggtagccatttgattgttcagcagttttatggcttgggggtagaagctgtaccgttttgggggtagaagctgtaacGTTAGCGCCTAGCTAGCACTAGCTGTGAACTATCTGAGCGCTACCGAACAAAAGCCTTAAAACAAGCTGATTTGCAGCGGCCATCGATATTTTAACACGGACAATTTTTATTATCAAGTTCTAGTCAAGATGGGAGGAGCTGTGAGCGCTGGCGAGGATAATGACGAGTTGATTGACAACCTGAAGGAGGCACACTACATCCATTCAGACCTGGTGGAGCGGGCCTTCAGGGCCATCGACCGGGCCGACTACTACCTGGAGGAGTACCGTGACAGTGCCTACAAGGACCTGGCCTGGAGGCACGGCAACATCCACCTATCAGCCCCCTGTATCTACTCTGAGGTGATGGAGGCCCTGGACCTGCACCCTGGCCTGTCCTTCCTCAACCTGGGCAGTGGGACGGGGTACCTCAGCACTATGGTGGGACTCATACTGGGTCCATTTGGTGTGAACCATGGGGTGGAGTTATATGCTGATGTGATTGAGTATGCCTATCAGAAGCTAGACTACTTCATCAAAACCAGCGAAAGCTTTGACAAGTTTGAGTTCTGCGAACCTTCGTTTGTGGCGGGGAACTGCCTGGAGATCCCCCCTGAGAGCAGGCAGTATGACAGGGTGTACTGTGGCGCGGGAGTGCAGAGAGACCATGAAGAATACATGAAGAACCTGCTGAAGGTGGGGGGTATTCTGGTACTGCCtctggaggagaagCTGACCAAGATCAGGCGTACAGGCCAGAGCAGCTGGGAGACCAAAAAGATCATTGCTGTGTCCTTCGCTCCACTGGCACTGCCCCAACATAACACCAATGGTGAACCCAAGACAGTCCCACTACCCACGTTTGAGGTGCGGACGCTGCAAGAGCTGGCTCGTATAGCCATCCGCCACACCCTGAGAGTGACCACGGACAACGGGGGGGGTCAGCCACGGGGTCGGGGCTCTTTTGGAGGAGGCAGGGGCCTGGGGGTCAGTGGGCTCCACAAGTACGGCCCGCGTTTTAAACGCCGGCGAGTTCACCACCGCCGCCACTGCACCTCTGTAGTACTGGCACACAAGCCTGTGGTGAGCAATGCTGACCCCACCCCTGCTCccctggacaacaacaacaataaccacGGGGGGCAGGAGGATGGGCAGCGAAGGGCAGcccgggaggaggaggaggaggaggaggaagcagaAAAGGAGACAGGGGAGCTACTCCCAGCAGAGCCACCTATAAACATCCTGAGAGAAAGGATTCTCGTTTTGCCCCTCCCGGAGCCTCTGAAGATGTACCTGCTGTACTGCCGGGAGAAATGACTTTTCCACAGATGCAGCACCCAGCAGAAACCAACAACCCctgactgggtctctgtctctgactgggtctctgtctctgactgggtttctgtctctgactgggtctctgtctctgactgggtctctgttaCTGACTGGGTCTCTGTTACTGACTGGGTCTCTGTTACTGACTGGGTCTCTGTTACT
>XM_036947690.1
actgaaaggtggggggggggttcaatgcaaatagtctgggtagccatttgattgttcagcagttttatggcttgggggtagaagctgtaccgttttgggggtagaagctgtaacGTTAGCGCCTAGCTAGCACTAGCTGTGAACTATCTGAGCGCTACCGAACAAAAGCCTTAAAACAAGCTGATTTGCAGCGGCCATCGATATTTTAACACGGACAATTTTTATTATCAAGTTCTAGATAAAGGCTCAGAagtttccccttctctctcgccAGTCAAGATGGGAGGAGCTGTGAGCGCTGGCGAGGATAATGACGAGTTGATTGACAACCTGAAGGAGGCACACTACATCCATTCAGACCTGGTGGAGCGGGCCTTCAGGGCCATCGACCGGGCCGACTACTACCTGGAGGAGTACCGTGACAGTGCCTACAAGGACCTGGCCTGGAGGCACGGCAACATCCACCTATCAGCCCCCTGTATCTACTCTGAGGTGATGGAGGCCCTGGACCTGCACCCTGGCCTGTCCTTCCTCAACCTGGGCAGTGGGACGGGGTACCTCAGCACTATGGTGGGACTCATACTGGGTCCATTTGGTGTGAACCATGGGGTGGAGTTATATGCTGATGTGATTGAGTATGCCTATCAGAAGCTAGACTACTTCATCAAAACCAGCGAAAGCTTTGACAAGTTTGAGTTCTGCGAACCTTCGTTTGTGGCGGGGAACTGCCTGGAGATCCCCCCTGAGAGCAGGCAGTATGACAGGGTGTACTGTGGCGCGGGAGTGCAGAGAGACCATGAAGAATACATGAAGAACCTGCTGAAGCTGACCAAGATCAGGCGTACAGGCCAGAGCAGCTGGGAGACCAAAAAGATCATTGCTGTGTCCTTCGCTCCACTGGCACTGCCCCAACATAACACCAATGGTGAACCCAAGACAGTCCCACTACCCACGTTTGAGGTGCGGACGCTGCAAGAGCTGGCTCGTATAGCCATCCGCCACACCCTGAGAGTGACCACGGACAACGGGGGGGGTCAGCCACGGGGTCGGGGCTCTTTTGGAGGAGGCAGGGGCCTGGGGGTCAGTGGGCTCCACAAGTACGGCCCGCGTTTTAAACGCCGGCGAGTTCACCACCGCCGCCACTGCACCTCTGTAGTACTGGCACACAAGCCTGTGGTGAGCAATGCTGACCCCACCCCTGCTCccctggacaacaacaacaataaccacGGGGGGCAGGAGGATGGGCAGCGAAGGGCAGcccgggaggaggaggaggaggaggaggaagcagaAAAGGAGACAGGGGAGCTACTCCCAGCAGAGCCACCTATAAACATCCTGAGAGAAAGGATTCTCGTTTTGCCCCTCCCGGAGCCTCTGAAGATGTACCTGCTGTACTGCCGGGAGAAATGACTTTTCCACAGATGCAGCACCCAGCAGAAACCAACAACCCctgactgggtctctgtctctgactgggtctctgtctctgactgggtttctgtctctgactgggtctctgtctctgactgggtctctgttaCTGACTGGGTCTCTGTTACTGACTGGGTCTCTGTTACTGACTGGGTCTCTGTTAC
>XM_036947688.1
ATCGCAAATCAAAAGGTGTTTGTCATCTGCTCCGAATACAGCAGGCAACCCATTaataaaccaacaatgcagttttaagaaaatatagtTAAGAAAAATATGTAATAAATTAACTTaagtaaaaaagtaacacaataaaaataacgaggctatcggtacagATAAAGGCTCAGAagtttccccttctctctcgccAGTCAAGATGGGAGGAGCTGTGAGCGCTGGCGAGGATAATGACGAGTTGATTGACAACCTGAAGGAGGCACACTACATCCATTCAGACCTGGTGGAGCGGGCCTTCAGGGCCATCGACCGGGCCGACTACTACCTGGAGGAGTACCGTGACAGTGCCTACAAGGACCTGGCCTGGAGGCACGGCAACATCCACCTATCAGCCCCCTGTATCTACTCTGAGGTGATGGAGGCCCTGGACCTGCACCCTGGCCTGTCCTTCCTCAACCTGGGCAGTGGGACGGGGTACCTCAGCACTATGGTGGGACTCATACTGGGTCCATTTGGTGTGAACCATGGGGTGGAGTTATATGCTGATGTGATTGAGTATGCCTATCAGAAGCTAGACTACTTCATCAAAACCAGCGAAAGCTTTGACAAGTTTGAGTTCTGCGAACCTTCGTTTGTGGCGGGGAACTGCCTGGAGATCCCCCCTGAGAGCAGGCAGTATGACAGGGTGTACTGTGGCGCGGGAGTGCAGAGAGACCATGAAGAATACATGAAGAACCTGCTGAAGGTGGGGGGTATTCTGGTACTGCCtctggaggagaagCTGACCAAGATCAGGCGTACAGGCCAGAGCAGCTGGGAGACCAAAAAGATCATTGCTGTGTCCTTCGCTCCACTGGCACTGCCCCAACATAACACCAATGGTGAACCCAAGACAGTCCCACTACCCACGTTTGAGGTGCGGACGCTGCAAGAGCTGGCTCGTATAGCCATCCGCCACACCCTGAGAGTGACCACGGACAACGGGGGGGGTCAGCCACGGGGTCGGGGCTCTTTTGGAGGAGGCAGGGGCCTGGGGGTCAGTGGGCTCCACAAGTACGGCCCGCGTTTTAAACGCCGGCGAGTTCACCACCGCCGCCACTGCACCTCTGTAGTACTGGCACACAAGCCTGTGGTGAGCAATGCTGACCCCACCCCTGCTCccctggacaacaacaacaataaccacGGGGGGCAGGAGGATGGGCAGCGAAGGGCAGcccgggaggaggaggaggaggaggaggaagcagaAAAGGAGACAGGGGAGCTACTCCCAGCAGAGCCACCTATAAACATCCTGAGAGAAAGGATTCTCGTTTTGCCCCTCCCGGAGCCTCTGAAGATGTACCTGCTGTACTGCCGGGAGAAATGACTTTTCCACAGATGCAGCACCCAGCAGAAACCAACAACCCctgactgggtctctgtctctgactgggtctctgtctctgactgggtttctgtctctgactgggtctctgtctctgactgggtctctgttaCTGACTGGGTCTCTGTTACTGACTGGGTCTCTGTTACTGACTGGGTCTCTGTTAC
>XM_036947687.1
ctgaaaggtggggggggggttcaatgcaaatagtctgggtagccatttgattgttcagcagttttatggcttgggggtagaagctgtaccgttttgggggtagaagctgtaacGTTAGCGCCTAGCTAGCACTAGCTGTGAACTATCTGAGCGCTACCGAACAAAAGCCTTAAAACAAGCTGATTTGCAGCGGCCATCGATATTTTAACACGGACAATTTTTATTATCAAGTTCTAGATAAAGGCTCAGAagtttccccttctctctcgccAGTCAAGATGGGAGGAGCTGTGAGCGCTGGCGAGGATAATGACGAGTTGATTGACAACCTGAAGGAGGCACACTACATCCATTCAGACCTGGTGGAGCGGGCCTTCAGGGCCATCGACCGGGCCGACTACTACCTGGAGGAGTACCGTGACAGTGCCTACAAGGACCTGGCCTGGAGGCACGGCAACATCCACCTATCAGCCCCCTGTATCTACTCTGAGGTGATGGAGGCCCTGGACCTGCACCCTGGCCTGTCCTTCCTCAACCTGGGCAGTGGGACGGGGTACCTCAGCACTATGGTGGGACTCATACTGGGTCCATTTGGTGTGAACCATGGGGTGGAGTTATATGCTGATGTGATTGAGTATGCCTATCAGAAGCTAGACTACTTCATCAAAACCAGCGAAAGCTTTGACAAGTTTGAGTTCTGCGAACCTTCGTTTGTGGCGGGGAACTGCCTGGAGATCCCCCCTGAGAGCAGGCAGTATGACAGGGTGTACTGTGGCGCGGGAGTGCAGAGAGACCATGAAGAATACATGAAGAACCTGCTGAAGGTGGGGGGTATTCTGGTACTGCCtctggaggagaagCTGACCAAGATCAGGCGTACAGGCCAGAGCAGCTGGGAGACCAAAAAGATCATTGCTGTGTCCTTCGCTCCACTGGCACTGCCCCAACATAACACCAATGGTGAACCCAAGACAGTCCCACTACCCACGTTTGAGGTGCGGACGCTGCAAGAGCTGGCTCGTATAGCCATCCGCCACACCCTGAGAGTGACCACGGACAACGGGGGGGGTCAGCCACGGGGTCGGGGCTCTTTTGGAGGAGGCAGGGGCCTGGGGGTCAGTGGGCTCCACAAGTACGGCCCGCGTTTTAAACGCCGGCGAGTTCACCACCGCCGCCACTGCACCTCTGTAGTACTGGCACACAAGCCTGTGGTGAGCAATGCTGACCCCACCCCTGCTCccctggacaacaacaacaataaccacGGGGGGCAGGAGGATGGGCAGCGAAGGGCAGcccgggaggaggaggaggaggaggaggaagcagaAAAGGAGACAGGGGAGCTACTCCCAGCAGAGCCACCTATAAACATCCTGAGAGAAAGGATTCTCGTTTTGCCCCTCCCGGAGCCTCTGAAGATGTACCTGCTGTACTGCCGGGAGAAATGACTTTTCCACAGATGCAGCACCCAGCAGAAACCAACAACCCctgactgggtctctgtctctgactgggtctctgtctctgactgggtttctgtctctgactgggtctctgtctctgactgggtctctgttaCTGACTGGGTCTCTGTTACTGACTGGGTCTCTGTTACTGACTGGGTCTCTGTTA
>TU1605893
gtctgggtagccatttgattgttcagcagttttatggcttgggggtagaagctgtaccgttttgggggtagaagctgtaacGTTAGCGCCTAGCTAGCACTAGCTGTGAACTATCTGAGCGCTACCGAACAAAAGCCTTAAAACAAGCTGATTTGCAGCGGCCATCGATATTTTAACACGGACAATTTTTATTATCAAGTTCTAGATAAAGGCTCAGAagtttccccttctctctcgccAGTCAAGATGGGAGGAGCTGTGAGCGCTGGCGAGGATAATGACGAGTTGATTGACAACCTGAAGGAGGCACACTACATCCATTCAGACCTGGTGGAGCGGGCCTTCAGGGCCATCGACCGGGCCGACTACTACCTGGAGGAGTACCGTGACAGTGCCTACAAGGACCTGGCCTGGAGGCACGGCAACATCCACCTATCAGCCCCCTGTATCTACTCTGAGGTGATGGAGGCC

Function

NR:

description
protein-L-isoaspartate O-methyltransferase domain-containing protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947689.1 False 1602 mRNA 0.55 6 70216538 70221289
XM_036947690.1 False 1601 mRNA 0.55 6 70216539 70221289
XM_036947688.1 False 1560 mRNA 0.54 6 70216539 70221552
XM_036947687.1 False 1635 mRNA 0.55 6 70216540 70221288
TU1605893 True 471 TUCP 0.52 2 70219877 70221256

Neighbor

gene id symbol gene type direction distance location
LOC118939578 NA coding downstream 28680 70185375 ~ 70187858 (-)
LOC118936543 LOC106566425 coding downstream 83258 70127253 ~ 70133280 (-)
LOC110491172 LOC106566442 coding downstream 550521 69577674 ~ 69666017 (-)
LOC118939576 NA coding downstream 640695 69571853 ~ 69575843 (-)
LOC110491170 LOC106566448 coding downstream 710522 69470416 ~ 69506016 (-)
LOC110492649 LOC106566409 coding upstream 8287 70229839 ~ 70282239 (-)
tmed4 LOC106566412 coding upstream 200877 70422429 ~ 70426035 (-)
LOC118939579 NA coding upstream 236369 70455694 ~ 70552795 (-)
LOC110492786 LOC105023799 coding upstream 319998 70541550 ~ 70754162 (-)
trnat-agu-43 NA coding upstream 781799 71003351 ~ 71003424 (-)
G1405958 NA non-coding downstream 78801 70137387 ~ 70137737 (-)
G1405919 NA non-coding downstream 81438 70134770 ~ 70135100 (-)
G1405933 NA non-coding downstream 90244 70126051 ~ 70126294 (-)
G1405918 NA non-coding downstream 102657 70112899 ~ 70113881 (-)
G1405954 NA non-coding downstream 109576 70104852 ~ 70106962 (-)
G1405985 NA non-coding upstream 1610 70223162 ~ 70226004 (-)
G1406075 NA non-coding upstream 168056 70389608 ~ 70394300 (-)
G1406091 LOC106566414 non-coding upstream 230683 70452235 ~ 70453318 (-)
G1406097 NA non-coding upstream 232335 70453887 ~ 70456223 (-)
G1405917 NA other downstream 120997 70078657 ~ 70095541 (-)
G1405172 NA other downstream 698425 69517755 ~ 69518113 (-)
G1405016 nsfl1c other downstream 936179 69277827 ~ 69280359 (-)
G1404974 LOC106566438 other downstream 1009380 69203286 ~ 69207158 (-)
LOC118939478 LOC106566484 other downstream 1421513 68791189 ~ 68795025 (-)
G1406228 NA other upstream 514095 70735647 ~ 70742179 (-)
G1406514 NA other upstream 1038770 71260322 ~ 71260817 (-)
G1406752 NA other upstream 1280927 71501118 ~ 71547366 (-)
G1406760 NA other upstream 1318406 71539958 ~ 71543469 (-)
G1407628 NA other upstream 2110254 72331806 ~ 72332715 (-)

Expression


Co-expression Network