plpbp (prosc)


Basic Information

Item Value
gene id plpbp
gene name prosc
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 70411676 ~ 70422505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567093.2
AGCTCTGCTACCACTAAATTCATTACTAACATTTTGATACTGAGCCATGCGCTGCTCTACAGTCATATCTGACTAAGATCATAAGTGTCTGAAGGGCTTCAACCTCGTCAAATATAAAACGAGAGATTTTTACATTGAAAATAACGTTCCTTGCGTTTTGCCGAAGTTTAGTGACGAAAAGTAGCTAACTGCTCTCGTGCCTCGTCATTGAGCTGAGCCAGCATTGCTATATGGATACTCAGCCGCTATGAGCAGGGAGCCAGTGACCGGTGCAGCTAATGGATTTACTAACGGAGTCGATTTATTTCTGGTTTCGTGCGGGTCTCATAGTTCAACAAACACCCAGCTAGATTGAATTGATGCGGAATGGTTTATCAATAGTCAACAAGGCGTCGCCCACTCACCTCCACACAAGCGTTCTATAATATAGAaaggacttttattttgacaggTTGATCACGTTGCTGTTGCTTACGCACGGTCGGTGGATTGAGGGTATGTGGAAAGTAGGAATGTCGGAGGAGGTTGGAAAAGCGTTACAAGCGGTGGTAGACAGGGTAAATCAAGCCGCGGCACGTCGACCCAAGACGTTGCCCGCGGTGCCGCCCCGCCTGGTAGCTGTAAGTAAGACGAAACCACCTGACATGGTGATCGAGGCGTACCGAAAAGGACATCGCAACTTTGGTGAAAACTATGTGAATGAACTTGTGGATAAAGCTTCAAATCCTCAGATTTTAGAATCATGCCCAGAAATCGAGTGGCATTTTATTGGCCATTTACAGAAGAATAATGTCAACAAACTTTTGGGTGTACCAAACCTGTTCATGGTGGAGACAGTGGACTCTGTCAAGTTGGCCGACAAGGTAAACAGCTCCTGGCTGCGGTTGAGAACAGCTAGTACGCAGACGTTAAAGATCATGGTTCAGATCAACACCAGTGGGGAGGAAAGTAAACATGGACTGCCTCCTGGTGAGACCGTGACCACAGTGAAACACATTTTATCCAAATGCTCTGCCCTACACTTCTCCGGACTCATGACCATTGGTCGCTATGGTTATGACCTAGCTGATGGCCCTAACCCGGATTTTCAGGCTTTGCTGAGTCGGCGACAGGAAGTGTGTGCCAGTCTACAGCTGCCGCTTGAAGATGTGGAGCTTAGTATGGGCATGTCCACTGACTTCGAACACGCGATTGAGGTGGGTTCAACCAACGTGCGAGTGGGTAGTACTATTTTTGGTAATAGGGATTATCCCAACACTCCCACTCCCAGTCCAGAGAGAAAGTCAAAGGTTCCTACAGAAGAGGCAGCTAAGAAGATGGAGCGTCTCACTGTGACAGAACAGTGATGTTTCTCCTTCCTACTCTCACAACAGGCTGAAAAGGATTTAGTATTTTATGAGATTTtctgggggggaaaaaacaacagcAGGTTTCCACAGTATGTCTTTACGATGTCTTTGGTTGATGTAGTAGTTTTCTACAGAGCCCATTCATTTATTTGAGCATTTTTGGGATGACGTTCGATCTTTTAAGTTGACATTAGACATAGATTCTCATTAATCAATTGATGGTATAGGATATAAGAAGTTCCCTACCTCACATCTTGATCTTGTGCCAACCCCTAGATTCAATAGACACCGTTTTACACGATAACGGAATTCAAGATAATTTGGAGAGTCAAGCAGAGGTCGACTCTCTCGACTCCCCCTTATATCATGACGTATGGTATGAGTCAATGAAATTGTTTTGTATGGTGTCAGATATTTGACGTTTTTTTTATAATTGATAAACCAAATTAGAAAACGGCAGGTAAAGAATGATTCATaccatatgtttacattgccacgTTATTTCATTTTGTGTGATGTCAGTGATTCTTCTGGTCTGAATTATTTGTTGGTGCAGTAAAAGATTTAAGAATGAACCTATGCAAAGATGAAATAGTTTAGTTTGTTCTGTTATGAGATTGTCTATCCTATAGTTATTATGGAACAATAATGCTGTAGTTACCATCAATGTAAAACTAAATCCATAACCAAGGGTGATAATGAACACATTCAGTGAATTGTATTGCAAAAACATTCACTTAAACAAGATACAGGGTTAAATTGATACTGAGGAAGGTGACAAGCAATAcaatatttattgaaaataacTGTTAGAAAAAAATCCTGTTCAGGGAATGCTACATAAACAGACCACAGATGGGAATCAACAACTTTTTCCATTTTTATTGAGTACATTGAAATGACAGCCAACCAAAAGTAAAAAACCTTAATAATGACAAA
>XM_021567094.2
GTCGTGAGAAATGGTCTTATCATTTAAGTGTCGAGGGTCGGTGGACCAGTTATGCAAGGAAAAACACCAACCTTTGAATTGAGAAAGCACACCGTAACATTCACATTACGTTTTGATACGTGCTGATTATTTTAATGCAAACTCTTTAAAGGCGCGCGCTGCATGCCACCAGTTTGCGCGTGGAGGATTCTAGAGGATCTGCTGCTTTTATAATTTTGATGTAAACGTCAACAATGTTTTGTAAACGTTGCAAAACATTTCCATCAACTTCCGTTCACTCCTGATCGTAAGGAATGACCGTTTTGATTGGTTCAATTGAGACCATCCCACCACCATTCGAAAACAACGTTGCCCGCGGTGCCGCCCCGCCTGGTAGCTGTAAGTAAGACGAAACCACCTGACATGGTGATCGAGGCGTACCGAAAAGGACATCGCAACTTTGGTGAAAACTATGTGAATGAACTTGTGGATAAAGCTTCAAATCCTCAGATTTTAGAATCATGCCCAGAAATCGAGTGGCATTTTATTGGCCATTTACAGAAGAATAATGTCAACAAACTTTTGGGTGTACCAAACCTGTTCATGGTGGAGACAGTGGACTCTGTCAAGTTGGCCGACAAGGTAAACAGCTCCTGGCTGCGGTTGAGAACAGCTAGTACGCAGACGTTAAAGATCATGGTTCAGATCAACACCAGTGGGGAGGAAAGTAAACATGGACTGCCTCCTGGTGAGACCGTGACCACAGTGAAACACATTTTATCCAAATGCTCTGCCCTACACTTCTCCGGACTCATGACCATTGGTCGCTATGGTTATGACCTAGCTGATGGCCCTAACCCGGATTTTCAGGCTTTGCTGAGTCGGCGACAGGAAGTGTGTGCCAGTCTACAGCTGCCGCTTGAAGATGTGGAGCTTAGTATGGGCATGTCCACTGACTTCGAACACGCGATTGAGGTGGGTTCAACCAACGTGCGAGTGGGTAGTACTATTTTTGGTAATAGGGATTATCCCAACACTCCCACTCCCAGTCCAGAGAGAAAGTCAAAGGTTCCTACAGAAGAGGCAGCTAAGAAGATGGAGCGTCTCACTGTGACAGAACAGTGATGTTTCTCCTTCCTACTCTCACAACAGGCTGAAAAGGATTTAGTATTTTATGAGATTTtctgggggggaaaaaacaacagcAGGTTTCCACAGTATGTCTTTACGATGTCTTTGGTTGATGTAGTAGTTTTCTACAGAGCCCATTCATTTATTTGAGCATTTTTGGGATGACGTTCGATCTTTTAAGTTGACATTAGACATAGATTCTCATTAATCAATTGATGGTATAGGATATAAGAAGTTCCCTACCTCACATCTTGATCTTGTGCCAACCCCTAGATTCAATAGACACCGTTTTACACGATAACGGAATTCAAGATAATTTGGAGAGTCAAGCAGAGGTCGACTCTCTCGACTCCCCCTTATATCATGACGTATGGTATGAGTCAATGAAATTGTTTTGTATGGTGTCAGATATTTGACGTTTTTTTTATAATTGATAAACCAAATTAGAAAACGGCAGGTAAAGAATGATTCATaccatatgtttacattgccacgTTATTTCATTTTGTGTGATGTCAGTGATTCTTCTGGTCTGAATTATTTGTTGGTGCAGTAAAAGATTTAAGAATGAACCTATGCAAAGATGAAATAGTTTAGTTTGTTCTGTTATGAGATTGTCTATCCTATAGTTATTATGGAACAATAATGCTGTAGTTACCATCAATGTAAAACTAAATCCATAACCAAGGGTGATAATGAACACATTCAGTGAATTGTATTGCAAAAACATTCACTTAAACAAGATACAGGGTTAAATTGATACTGAGGAAGGTGACAAGCAATAcaatatttattgaaaataacTGTTAGAAAAAAATCCTGTTCAGGGAATGCTACATAAACAGACCACAGATGGGAATCAACAACTTTTTCCATTTTTATTGAGTACATTGAAATGACAGCCAACCAAAAGTAAAAAACCTTAATAATGACAAA

Function

symbol description
prosc PLP dependent protein

NR:

description
proline synthase co-transcribed bacterial homolog protein-like isoform X1

GO: NA

KEGG:

id description
K06997 yggS, PROSC; PLP dependent protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567093.2 False 2288 mRNA 0.42 8 70411676 70422505
XM_021567094.2 True 2046 mRNA 0.41 8 70412321 70422505

Neighbor

gene id symbol gene type direction distance location
snrpg LOC106572841 coding upstream 251 70403323 ~ 70411425 (+)
si:ch211-148l7.4 LOC106566411 coding upstream 9066 70394785 ~ 70402610 (+)
LOC110492655 LOC106566410 coding upstream 17311 70380329 ~ 70394365 (+)
LOC110492650 LOC106566426 coding upstream 198960 70198438 ~ 70212716 (+)
LOC110492666 NA coding upstream 217246 70191792 ~ 70194430 (+)
LOC110492662 NA coding downstream 3595 70426100 ~ 70427552 (+)
si:ch211-207e14.4 LOC106566413 coding downstream 10393 70432898 ~ 70443987 (+)
LOC110492651 LOC106566414 coding downstream 22518 70445023 ~ 70463950 (+)
LOC118939580 NA coding downstream 35375 70457880 ~ 70459041 (+)
LOC118939481 NA coding downstream 45703 70468208 ~ 70468967 (+)
G1405741 NA non-coding upstream 1143 70410094 ~ 70410533 (+)
G1405731 NA non-coding upstream 23653 70387770 ~ 70388023 (+)
G1405724 NA non-coding upstream 39112 70370967 ~ 70372564 (+)
G1405719 NA non-coding upstream 49782 70361637 ~ 70361894 (+)
G1405754 NA non-coding downstream 39105 70461610 ~ 70462570 (+)
G1405789 NA non-coding downstream 119083 70541588 ~ 70546404 (+)
G1405805 NA non-coding downstream 144787 70567292 ~ 70571205 (+)
G1405817 NA non-coding downstream 178302 70600807 ~ 70607045 (+)
G1405823 NA non-coding downstream 188223 70610728 ~ 70611352 (+)
G1405676 NA other upstream 154246 70256822 ~ 70257430 (+)
G1405605 LOC106566425 other upstream 279375 70129921 ~ 70132301 (+)
G1405310 LOC106566443 other upstream 739002 69671464 ~ 69672674 (+)
G1405218 NA other upstream 824770 69585989 ~ 69586906 (+)
G1405216 NA other upstream 828050 69580729 ~ 69583626 (+)
G1406381 NA other downstream 547110 70969615 ~ 70972604 (+)
G1406424 NA other downstream 779937 71202442 ~ 71206092 (+)
G1406505 NA other downstream 787767 71210272 ~ 71210764 (+)
G1406507 NA other downstream 791872 71214377 ~ 71216430 (+)
G1406508 NA other downstream 823068 71245573 ~ 71246023 (+)

Expression


Co-expression Network