tmed4 (LOC106566412)



Basic Information


Item Value
gene id tmed4
gene name LOC106566412
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 70422429 ~ 70426035 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021567099.2
caacaaaaaaaagagtcGTTTGTTCGCGAACGACTCATCACTAGCATCTACTGCGCTGACTCTGCTGATGGTGACAACAAAGCTGTTTTGACATGATGCTCACTGTACCCGGCGCCGGAATTATCATATTATTTGCTTGGCTCTCTCCAAGTTACGCTCTCTATTTTCACATTGGGGAGACGGAGAAAAAATGCTTTATAGAGGAAATTCCAGATGAAACTATGGTTATTgGGAAATACAGGACCCAGCTGTGGGACAAGCAGACCGGATCGTTCCTCCCAGCCACACCTGGCCTTGGAATGCATGTGGAGATCAAGGATCCAGATACTAAGATCATCCTGTCTCGTCAGTATGGGTCAGATGGACGGTTCACCTTCACATCCCATACCCCGGGCGAGCATCAAATCTGCCTGCACTCCAACTCCACCAAGATGGCCCTGTTTGCTGGTGGCAAACTGAGAGTTCACCTGGATATTCAGGTTGGTGAGCATACCAACAACTACCCTGAAATCGCAGCAAAAGACAAGCTCACAGAGCTGCAATTGAGAGCTCGACAATTACTGGACCAAGTAGAACAAATCCAGAAAGAGCAAAACTATCAGCGGTATCGTGAGGAGCGGTTCCGCATGACAAGTGAGAGCACCAACCAGCGTGTGCTTTGGTGGTCGATAGCGCAGACGCTTATTCTCATCGTCACTGGCATCTGGCAGATGAAGCACCTCAAGAGCTTCTTTGAGGCCAAGAAGTTGGTGTAATGCTCTCAGGCCATCACTGATTGAGTTTAAGACCGGCATCACACCCATACAGAGTTGACTGGCAGAGAGACAAGGTGTTGATGTGATTTAGTAGATGCTTAAAAAGGGCAATTCCGCCACTTTCAACCTCAAGTGTACATATGTGAAACCAGCTCATTTGTGGTTAAATTGATAaggtcctaaaaaaaaaaaaaaaatgcttctctGTGGGTTAAAAATAAAAAGTGATTTTCCAAACCTGCAATTATTTTCTTGCTCCCCATGTCACCACAAATGTTTGAAAATCAGTTTTTAAAATGTTAACTTTTGATGTCATCAGGTAGAACTTCActtaaattgttttaaaataaACAAATGTGCCATTTCACATATGTCGACAATGGTATTATGCTGGAGATAAATGAGGTTGAGAAGTGGTGGAGTTGCCCTTTAAATGGGCAATCTGCAGCTGAAGGATAGGGCTGGAGAAATTTAACCACACTCAAATTTTTAGTCAAAGCTATACATTCCAAGGACTTGACCAACTTTGAGATCAaaattgtttacatttactttgtttataaACAATGAAGTAAAACAAGCTTTTATTTTAGGTTCTGATgaggtacaacagttgaactaagctcatcaGGCATTTGTAAgttattcaagaatcaatgggtacatattaaTTTGTAAGTCTAAAAAAATTtaacaactgcagattgccccttttaaaCCTGGGAAGCAAATGAATTGATGCCATCCAGTGCATTTTGTATTGTCCATTATTATTCCGTGATTTTAATTATTGTGTTAAGGAGTAAGCAGCACCTGTGTCCATGTTGTTGTATTAGGTCTACTGCTGTGTAGTTGTTGTATAAAACTGTGTTGGACTGTACATATAAGCAGTGGCAAAATTTTGAACTAAGCAGTCAGATCCACATTACTAGTATTTTGTAGATCTTGGTCTTTCtgaaaactgtattattttggtTTAAAACACTTGTATTTATTTGGACTATATTGTGTTTTAGTCTACTAACATGATTGTAACATAGCTAATAATAGGGATATCTTAATGACTAACCTGTTCACGCCCAAACACCAGTTCACAAGTAGAATGGCATCCACAACCTTACCTTCTGTTGAAGAGCAGTATCATTCCAGAAAATATTACTTTATTTATATTTCCAGAGGTCCAAACAGCcccgtttaaaaaaaattaaaaaagaccCAACTAATTAAATTAGGTGCAGATTCAATTTGAATGTTGTGAAATGAATGCCCATGATAAAATACCCCTGAGTTATTCAAAACTGAACAAGGGTTTAGGTTACAAGCTAGATATCAGTAAGATGCGAATACAAATACTGTAGTGTTATGACAAGGAATAAAGTCACAAGGTTTGAATTTGTCATTATTAAGGTTTTTTACTTTTGGTTGGCTGTCATTTCAATGTACTCAATAAAAATGGAAAAAGTTGTTGA
>XM_021567100.2
acaacaaaaaaaagagtcGTTTGTTCGCGAACGACTCATCACTAGCATCTACTGCGCTGACTCTGCTGATGGTGACAACAAAGCTGTTTTGACATGATGCTCACTGTACCCGGCGCCGGAATTATCATATTATTTGCTTGGCTCTCTCCAAGTTACGCTCTCTATTTTCACATTGGGGAGACGGAGAAAAAATGCTTTATAGAGGAAATTCCAGATGAAACTATGGTTATTgGGAAATACAGGACCCAGCTGTGGGACAAGCAGACCGGATCGTTCCTCCCAGCCACACCTGGCCTTGGAATGCATGTGGAGATCAAGGATCCAGATACTAAGATCATCCTGTCTCGTCAGTATGGGTCAGATGGACGGTTCACCTTCACATCCCATACCCCGGGCGAGCATCAAATCTGCCTGCACTCCAACTCCACCAAGATGGCCCTGTTTGCTGGTGGCAAACTGAGAGTTCACCTGGATATTCAGGTTGGTGAGCATACCAACAACTACCCTGAAATCGCAGCAAAAGACAAGCTCACAGAGCTGCAATTGAGAGCTCGACAATTACTGGACCAAGTAGAACAAATCCAGAAAGAGCAAAACTATCAGCGGTATCGTGAGGACTTCCCCTTGTCTTTCAATGTTCTCGTGACTGTCTGTGTATCTCATTTAACAGTATCGTGAGGAGCGGTTCCGCATGACAAGTGAGAGCACCAACCAGCGTGTGCTTTGGTGGTCGATAGCGCAGACGCTTATTCTCATCGTCACTGGCATCTGGCAGATGAAGCACCTCAAGAGCTTCTTTGAGGCCAAGAAGTT

Function


NR:

description
transmembrane emp24 domain-containing protein 4-like isoform X2

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021567099.2 False 2224 mRNA 0.39 5 70422429 70426034
XM_021567100.2 True 813 mRNA 0.48 5 70423905 70426035

Neighbor


gene id symbol gene type direction distance location
LOC110492649 LOC106566409 coding downstream 140190 70229839 ~ 70282239 (-)
LOC110492660 LOC106566428 coding downstream 200877 70216538 ~ 70221552 (-)
LOC118939578 NA coding downstream 234571 70185375 ~ 70187858 (-)
LOC118936543 LOC106566425 coding downstream 289149 70127253 ~ 70133280 (-)
LOC110491172 LOC106566442 coding downstream 756412 69577674 ~ 69666017 (-)
LOC118939579 NA coding upstream 31886 70455694 ~ 70552795 (-)
LOC110492786 LOC105023799 coding upstream 115515 70541550 ~ 70754162 (-)
trnat-agu-43 NA coding upstream 577316 71003351 ~ 71003424 (-)
trnah-gug-30 NA coding upstream 578336 71004371 ~ 71004442 (-)
trnat-agu-44 NA coding upstream 578692 71004727 ~ 71004800 (-)
G1406075 NA non-coding downstream 28129 70389608 ~ 70394300 (-)
G1405985 NA non-coding downstream 196425 70223162 ~ 70226004 (-)
G1405958 NA non-coding downstream 284692 70137387 ~ 70137737 (-)
G1405919 NA non-coding downstream 287329 70134770 ~ 70135100 (-)
G1405933 NA non-coding downstream 296135 70126051 ~ 70126294 (-)
G1406091 LOC106566414 non-coding upstream 26200 70452235 ~ 70453318 (-)
G1406097 NA non-coding upstream 27852 70453887 ~ 70456223 (-)
G1406099 NA non-coding upstream 35654 70461689 ~ 70462523 (-)
G1406100 NA non-coding upstream 37635 70463670 ~ 70466262 (-)
G1405917 NA other downstream 326888 70078657 ~ 70095541 (-)
G1405172 NA other downstream 904316 69517755 ~ 69518113 (-)
G1405016 nsfl1c other downstream 1142070 69277827 ~ 69280359 (-)
G1404974 LOC106566438 other downstream 1215271 69203286 ~ 69207158 (-)
G1406228 NA other upstream 309612 70735647 ~ 70742179 (-)
G1406514 NA other upstream 834287 71260322 ~ 71260817 (-)
G1406752 NA other upstream 1076444 71501118 ~ 71547366 (-)
G1406760 NA other upstream 1113923 71539958 ~ 71543469 (-)
G1407628 NA other upstream 1905771 72331806 ~ 72332715 (-)

Expression



Co-expression Network