LOC110492662


Basic Information

Item Value
gene id LOC110492662
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 70426100 ~ 70427552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567101.2
TCCCTGATTtgcatactgctactactgctttaTGAGCTCAAATCAAACGTTTTTCTGtagataataaaaaataatgatCCAAAATAGGATGAATCCTCACTGCAGAAACAATAAATAGTGGGGAGAGGGCGTCAATCTGATCCGTTTGGGAGACAAACGAGCCGACTCTTTTACGTGAACGGAGCTGATTGAGCCGGCTCACTAAAAAGAGTCCGAATGCCCATCACAAATAGACGCAATTAGCTgctgtacttttattttgaaacccCGTCGGAagtgtttttattattttttacaggaTCACACACTGCCCAGAATGCACTTCGTCGAGACAGCTCTTGGTGGCGTTATGATGTGGGGATATCTCGGCATCTACAATTGCATTttgctgtgggaccttataaaacGGTGTTTGGATGTTGTAAAGACAATTTGTCTGTGGCATTTAGCTACTTTTTTTTCTGATTCAAAGATATGGCTTAGTACAAAGATGCAGAAAGCGAGGCTGGAAGAGCCATgcagctgattttttttttttaaagcgtgAAAGAGAACAACTTTCACAGCTAAAGGAGAAAATTGCTCATGTCAGTCAACTtgttaacGACAACATGGTCAAGTCCAACGTCAATAAAAGTTCAAAGCTCAATTATGATGCGGTGGAAGCAGAGCTCAAATCCAGCACTGTTGGTCTGGTGACACTCAATGATATGAAGGCCAGGCAGGAGGCTCTtgtgaaagaaagagaaaagcaACTGGCCAAGAAAGAGCAAACAAAGGAGTTGATGCTGAAGTCTTCTGTCGAAAGCTGTTGTCAGTATCTCGTCTCTGCTCTCCTGTCTACCACCCGGAagctggagaagaagagaaaggatgCCAGTTTATCCTTTAATcctgaagaggaggagacggaggaggaagaggactgtGAGTGGTGTCAATAATAAATCCACAATACTTATGtatcttagctgattagctgttgttgtctcacctgttgttttagctagctctcccaatcaacacctgcgattactttatgcctcgctgtatgtctctctcaaatgtcaatatgccttgtatactg
>XM_021567102.2
GATTtgcatactgctactactgctttaTGAGCTCAAATCAAACGTTTTTCTGtagataataaaaaataatgatCCAAAATAGGATGAATCCTCACTGCAGAAACAATAAATAGTGGGGAGAGGGCGTCAATCTGATCCGTTTGGGAGACAAACGAGCCGACTCTTTTACGTGAACGGAGCTGATTGAGCCGGCTCACTAAAAAGAGTCCGAATGCCCATCACAAATAGACGCAATTAGCTgctgtacttttattttgaaacccCGTCGGAagtgtttttattattttttacaggaTCACACACTGCCCAGAATGCACTTCGTCGAGACAGCTCTTGGTGGCGTTATGATGTGGGGATATCTCGGCATCTACAATTGCATTttgctgtgggaccttataaaacGGTGTTTGGATGTTGTAAAGACAATTTGTCTGTGGCATTTAGCTACTTTTTTTTCTGATTCAAAGATATGGCTTAGTACAAAGATGCAGAAAGCGAGGCTGGAAGAGCCATgcagctgattttttttttttaaagcgtgAAAGAGAACAACTTTCACAGCTAAAGGAGAAAATTGCTCATGACAACATGGTCAAGTCCAACGTCAATAAAAGTTCAAAGCTCAATTATGATGCGGTGGAAGCAGAGCTCAAATCCAGCACTGTTGGTCTGGTGACACTCAATGATATGAAGGCCAGGCAGGAGGCTCTtgtgaaagaaagagaaaagcaACTGGCCAAGAAAGAGCAAACAAAGGAGTTGATGCTGAAGTCTTCTGTCGAAAGCTGTTGTCAGTATCTCGTCTCTGCTCTCCTGTCTACCACCCGGAagctggagaagaagagaaaggatgCCAGTTTATCCTTTAATcctgaagaggaggagacggaggaggaagaggactgtGAGTGGTGTCAATAATAAATCCACAATACTTATGtatcttagctgattagctgttgttgtctcacctgttgttttagctagctctcccaatcaacacctgcgattactttatgcctcgctgtatgtctctctcaaatgtcaatatgccttgtatactg
>XR_005036613.1
ctactgctttaTGAGCTCAAATCAAACGTTTTTCTGtagataataaaaaataatgatCCAAAATAGGATGAATCCTCACTGCAGAAACAATAAATAGTGGGGAGAGGGCGTCAATCTGATCCGTTTGGGAGACAAACGAGCCGACTCTTTTACGTGAACGGAGCTGATTGAGCCGGCTCACTAAAAAGAGTCCGAATGCCCATCACAAATAGACGCAATTAGCTgctgtacttttattttgaaacccCGTCGGAagtgtttttattattttttacaggaTCACACACTGCCCAGAATGCACTTCGTCGAGACAGCTCTTGGTGGCGTTATGATGTGGGGATATCTCGGCATCTACAATTGCATTttgctgtgggaccttataaaacGGTGTTTGGATGTTGTAAAGACAATTTGTCTGTGGCATTTAGCTACTTTTTTTTCTGATTCAAAGATATGGCTTAGTACAAAGATGCAGAAAGCGAGGCTGGAAGAGCCATgcagctgattttttttttttaaagcgtgAAAGAGAACAACTTTCACAGCTAAAGGAGAAAATTGCTCATGTCAGTCAACTtgttaacgttagttagctaagtAACGTTATTTTTCTTGCATATTCAATGCTTTGTAGTTACTGAAAGCCTTCAACATTACCTATTTCCACCCCTCTTAACCATCTGAATGTCTCCTGCAGGACAACATGGTCAAGTCCAACGTCAATAAAAGTTCAAAGCTCAATTATGATGCGGTGGAAGCAGAGCTCAAATCCAGCACTGTTGGTCTGGTGACACTCAATGATATGAAGGCCAGGCAGGAGGCTCTtgtgaaagaaagagaaaagcaACTGGCCAAGAAAGAGCAAACAAAGGAGTTGATGCTTGACTCATGATTATGTAGGAAGTCTTCTGTCGAAAGCTGTTGTCAGTATCTCGTCTCTGCTCTCCTGTCTACCACCCGGAagctggagaagaagagaaaggatgCCAGTTTATCCTTTAATcctgaagaggaggagacggaggaggaagaggactgtGAGTGGTGTCAATAATAAATCCACAATACTTATGtatcttagctgattagctgttgttgtctcacctgttgttttagctagctctcccaatcaacacctgcgattactttatgcctcgctgtatgtctctctcaaatgtcaatatgccttgtatactg
>XR_005036614.1
tgctttaTGAGCTCAAATCAAACGTTTTTCTGtagataataaaaaataatgatCCAAAATAGGATGAATCCTCACTGCAGAAACAATAAATAGTGGGGAGAGGGCGTCAATCTGATCCGTTTGGGAGACAAACGAGCCGACTCTTTTACGTGAACGGAGCTGATTGAGCCGGCTCACTAAAAAGAGTCCGAATGCCCATCACAAATAGACGCAATTAGCTgctgtacttttattttgaaacccCGTCGGAagtgtttttattattttttacaggaTCACACACTGCCCAGAATGCACTTCGTCGAGACAGCTCTTGGTGGCGTTATGATGTGGGGATATCTCGGCATCTACAATTGCATTttgctgtgggaccttataaaacGGTGTTTGGATGTTGTAAAGACAATTTGTCTGTGGCATTTAGCTACTTTTTTTTCTGATTCAAAGATATGGCTTAGTACAAAGATGCAGAAAGCGAGGCTGGAAGAGCCATgcagctgattttttttttttaaagcgtgAAAGAGAACAACTTTCACAGCTAAAGGAGAAAATTGCTCATGACAACATGGTCAAGTCCAACGTCAATAAAAGTTCAAAGCTCAATTATGATGCGGTGGAAGCAGAGCTCAAATCCAGCACTGTTGGTCTGGTGACACTCAATGATATGAAGGCCAGGCAGGAGGCTCTtgtgaaagaaagagaaaagcaACTGGCCAAGAAAGAGCAAACAAAGGAGTTGATGCTTGACTCATGATTATGTAGGAAGTCTTCTGTCGAAAGCTGTTGTCAGTATCTCGTCTCTGCTCTCCTGTCTACCACCCGGAagctggagaagaagagaaaggatgCCAGTTTATCCTTTAATcctgaagaggaggagacggaggaggaagaggactgtGAGTGGTGTCAATAATAAATCCACAATACTTATGtatcttagctgattagctgttgttgtctcacctgttgttttagctagctctcccaatcaacacctgcgattactttatgcctcgctgtatgtctctctcaaatgtcaatatgccttgtatactg

Function

NR:

description
protein FAM50A-like isoform X2

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567101.2 False 1087 mRNA 0.42 4 70426100 70427552
XM_021567102.2 False 1064 mRNA 0.42 4 70426105 70427552
XR_005036613.1 False 1197 mRNA 0.42 3 70426121 70427552
XR_005036614.1 True 1062 mRNA 0.42 4 70426125 70427552

Neighbor

gene id symbol gene type direction distance location
plpbp prosc coding upstream 3595 70411676 ~ 70422505 (+)
snrpg LOC106572841 coding upstream 14675 70403323 ~ 70411425 (+)
si:ch211-148l7.4 LOC106566411 coding upstream 23490 70394785 ~ 70402610 (+)
LOC110492655 LOC106566410 coding upstream 31735 70380329 ~ 70394365 (+)
LOC110492650 LOC106566426 coding upstream 213384 70198438 ~ 70212716 (+)
si:ch211-207e14.4 LOC106566413 coding downstream 5346 70432898 ~ 70443987 (+)
LOC110492651 LOC106566414 coding downstream 17471 70445023 ~ 70463950 (+)
LOC118939580 NA coding downstream 30328 70457880 ~ 70459041 (+)
LOC118939481 NA coding downstream 40656 70468208 ~ 70468967 (+)
LOC118939465 NA coding downstream 343955 70771507 ~ 70772049 (+)
G1405741 NA non-coding upstream 15567 70410094 ~ 70410533 (+)
G1405731 NA non-coding upstream 38077 70387770 ~ 70388023 (+)
G1405724 NA non-coding upstream 53536 70370967 ~ 70372564 (+)
G1405719 NA non-coding upstream 64206 70361637 ~ 70361894 (+)
G1405754 NA non-coding downstream 34058 70461610 ~ 70462570 (+)
G1405789 NA non-coding downstream 114036 70541588 ~ 70546404 (+)
G1405805 NA non-coding downstream 139740 70567292 ~ 70571205 (+)
G1405817 NA non-coding downstream 173255 70600807 ~ 70607045 (+)
G1405823 NA non-coding downstream 183176 70610728 ~ 70611352 (+)
G1405676 NA other upstream 168670 70256822 ~ 70257430 (+)
G1405605 LOC106566425 other upstream 293799 70129921 ~ 70132301 (+)
G1405310 LOC106566443 other upstream 753426 69671464 ~ 69672674 (+)
G1405218 NA other upstream 839194 69585989 ~ 69586906 (+)
G1405216 NA other upstream 842474 69580729 ~ 69583626 (+)
G1406381 NA other downstream 542063 70969615 ~ 70972604 (+)
G1406424 NA other downstream 774890 71202442 ~ 71206092 (+)
G1406505 NA other downstream 782720 71210272 ~ 71210764 (+)
G1406507 NA other downstream 786825 71214377 ~ 71216430 (+)
G1406508 NA other downstream 818021 71245573 ~ 71246023 (+)

Expression


Co-expression Network