LOC110492651 (LOC106566414)


Basic Information

Item Value
gene id LOC110492651
gene name LOC106566414
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 70445023 ~ 70463950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947695.1
GCGGGCTTTTAATCTGAAGGTTTCCTTATTGCCATACTATAGTGACGTCATCGTTTGTGCTGCTGGTAGAACGAACGTCTCTGAAACTACCGGATCCAACATGGAGAGAAAAGTTCTAGCACTTCAGGCAAGGAAGAAGAGGGCGAAAGCAAAGAAGTCGAGCAAGAAACAGCCAGCCCACCCCAGGGGTGCAGCACCCCAGCAGCAGTCCCAGCCAGAGGCCTCTCCCCAGGAACCAGATGAGCCTGAGGAGATCTTAGGCTCTGATGATGAGGAGCAGGAGGATCCCAATGACTACTGCAAGGGTGGCTACCACCATGTGAAGATAGGAGACCTGTTCAATGGGAGGTACCATGTGATCAGGAAGCTGGGCTGGGGACACTTCTCCACTGTGTGGCTGGCTTGGGACATTCAGGTGAAGAGGTTTGTGGCTATGAAAGTGGTGAAGAGTGCAGAGCATTACACAGAGACGGCTGTAGATGAGATCAAACTGCTCAGATCTGTGAGAAACACGGACCCTGACGACCCCAAGAGGGAGATGGTGGTTCAGCTACTGGATGACTTCAAGATCTCCGGCATCAACGGGACTCATGTGTGCATGGTGTTTGAGGTGCTGGGGCACCACCTACTGAAGTGGATCATCAAGTCCAACTACCAGGGCCTTCCACTGCCCTGCGTCAAGACCATCATACGACAGGTTCTCCAGGGGTTGGACTACCTTCACACCAAGTGTGAGATCATCCACACTGACATCAAGCCAGAGAACATCCTGTTGACGGTGAATGAGCCGTACGTGAGGAGGCTGGCCGCGGAGGCCACAGAGTGGCAGAAAGCAGGGGCTCCCCCTCCCTCAGGGTCCGCAGTCAGCACAGCTCCAGCTCCAAAAGCAacgACCAAAATGTCCAAGAACAAGAAGAAGAAATTAAAGAAGAAGCAGAAGCGTCAGGCGGAGCTGTTGGAGAAGTGCATTCTGGAtctggaggagatggagaaggctccggagagggaggaggaggatgacgaAGAGGATCCGGAGTCTCCCGTATCTCCCAAGCAGCAGCGGCCATATTGTGCTCCTCTCAGACAAGTCTCCTTACAGGAAGTAGCCAGCCAAGACACAGCAGGATGCATTGCGGGTGCGGAGGTGACGTGGTTAGGACCAGAAGGGATAATAACAGACGCAGAAGTGAACTGTAACGGCCTTCATCCTGAGGCAGGGGACAATGAAACGGAGGAGAGGAAGGCACAGTGGAGAGAGCAAGACCAACACAACGGCAACGTAGACCAAACAGGGGATTGTCCTCTTCTTCAGGAGTCTCCACCACTTCGACCCGTGTATAACGGCCTGGTGTCCCCGGATACCCCAGAGAGTGAGGAGGGGAGTGGAGCACCGACCAGGAAGGAGGCTGAAATAAAGACTAAAGCATCCAAGACTGAGACGAAAAGCTTTGGTGGCCGGGAGGAGCTATCGTCGGAGGAGCAGAAGAATCAGGAAAGGAGTCAAGTGGAAGTCACAGAGGAGGCGCAGGGCAGGAGTCGTggagaggaggtgctggagaacGTCCAGtatggaggagaacaggagagtcTGAAGGATGGTGAGAAGACGGCCAAATTAGCAGCGGGGAACCTCCTGGTGAACCCTCTGGAGCCACTCAACGCAGACAGACTGAAGGTCAAGATAGCAGACCTGGGCAACGCCTGCTGGCTGCACAAGCACTTTACGGAAGACATCCAGACGAGACAGTACCGTTCTCTAGAGGTGCTCATAGGGTCTGGCTACAACACACCAGCTGACATATGGAGTACAGCCTGCATGGCGTTTGAGCTGGCCACTGGGGACTACTTGTTTGAGCCTCATTCCGGGGAAGATTACTCCAGGGACGAAGACCATATCGCATTGATCATCGAGCTGCTGGGGCAAGTCCCACACAAACTCGTAACAGCCGGGAGATATTCAAAGGATTTTTTCACCAAGAAAGGGGACCTGAAGCACATCACCAAGCTGAAGCCATGGGGGTTACTAGAGGTGCTGCAGGATAAGTACGAGTGGTCCAAAGAGGAGGCTGATTGTTTCGCTGACTTCCTCCTCCCCATGCTGGAGCTGGTACCAGAGAAGAGAGCCACGGCTGCAGACTGCCTGCGCCACCCCTGGATCGCCCCCCAGTGACGGCCCCCCAGTACTGCAATGCAAAACACCTAGGGCCTGTTCAGTCGACAAACGTTTTTGAATGTTGCAGCTAATTCGAATGACTGGAGCTGACTTAACT
>XM_036947696.1
GGGCTTTTAATCTGAAGGTTTCCTTATTGCCATACTATAGTGACGTCATCGTTTGTGCTGCTGGTAGAACGAACGTCTCTGAAACTACCGGATCCAACATGGAGAGAAAAGTTCTAGCACTTCAGGCAAGGAAGAAGAGGGCGAAAGCAAAGAAGTCGAGCAAGAAACAGCCAGCCCACCCCAGGGGTGCAGCACCCCAGCAGCAGTCCCAGCCAGAGGCCTCTCCCCAGGAACCAGATGAGCCTGAGGAGATCTTAGGCTCTGATGATGAGGAGCAGGAGGATCCCAATGACTACTGCAAGGGTGGCTACCACCATGTGAAGATAGGAGACCTGTTCAATGGGAGGTACCATGTGATCAGGAAGCTGGGCTGGGGACACTTCTCCACTGTGTGGCTGGCTTGGGACATTCAGGTGAAGAGGTTTGTGGCTATGAAAGTGGTGAAGAGTGCAGAGCATTACACAGAGACGGCTGTAGATGAGATCAAACTGCTCAGATCTGTGAGAAACACGGACCCTGACGACCCCAAGAGGGAGATGGTGGTTCAGCTACTGGATGACTTCAAGATCTCCGGCATCAACGGGACTCATGTGTGCATGGTGTTTGAGGTGCTGGGGCACCACCTACTGAAGTGGATCATCAAGTCCAACTACCAGGGCCTTCCACTGCCCTGCGTCAAGACCATCATACGACAGGTTCTCCAGGGGTTGGACTACCTTCACACCAAGTGTGAGATCATCCACACTGACATCAAGCCAGAGAACATCCTGTTGACGGTGAATGAGCCGTACGTGAGGAGGCTGGCCGCGGAGGCCACAGAGTGGCAGAAAGCAGGGGCTCCCCCTCCCTCAGGGTCCGCAGTCAGCACAGCTCCAGCTCCAAAAGCAacgACCAAAATGTCCAAGAACAAGAAGAAGAAATTAAAGAAGAAGCAGAAGCGTCAGGCGGAGCTGTTGGAGAAGTGCATTCTGGAtctggaggagatggagaaggctccggagagggaggaggaggatgacgaAGAGGATCCGGAGTCTCCCGTATCTCCCAAGCAGCAGCGGCCATATTGTGCTCCTCTCAGACAAGTCTCCTTACAGGAAGTAGCCAGCCAAGACACAGCAGGATGCATTGCGGGTGCGGAGGTGACGTGGTTAGGACCAGAAGGGATAATAACAGACGCAGAAGTGAACTGTAACGGCCTTCATCCTGAGGCAGGGGACAATGAAACGGAGGAGAGGAAGGCACAGTGGAGAGAGCAAGACCAACACAACGGCAACGTAGACCAAACAGGGGATTGTCCTCTTCTTCAGGAGTCTCCACCACTTCGACCCGTGTATAACGGCCTGGTGTCCCCGGATACCCCAGAGAGTGAGGAGGGGAGTGGAGCACCGACCAGGAAGGAGGCTGAAATAAAGACTAAAGCATCCAAGACTGAGACGAAAAGCTTTGGTGGCCGGGAGGAGCTATCGTCGGAGGAGCAGAAGAATCAGGAAAGGAGTCAAGTGGAAGTCACAGAGGAGGCGCAGGGCAGGAGTCGTggagaggaggtgctggagaacGTCCAGtatggaggagaacaggagagtcTGAAGGATGCCAAATTAGCAGCGGGGAACCTCCTGGTGAACCCTCTGGAGCCACTCAACGCAGACAGACTGAAGGTCAAGATAGCAGACCTGGGCAACGCCTGCTGGCTGCACAAGCACTTTACGGAAGACATCCAGACGAGACAGTACCGTTCTCTAGAGGTGCTCATAGGGTCTGGCTACAACACACCAGCTGACATATGGAGTACAGCCTGCATGGCGTTTGAGCTGGCCACTGGGGACTACTTGTTTGAGCCTCATTCCGGGGAAGATTACTCCAGGGACGAAGACCATATCGCATTGATCATCGAGCTGCTGGGGCAAGTCCCACACAAACTCGTAACAGCCGGGAGATATTCAAAGGATTTTTTCACCAAGAAAGGGGACCTGAAGCACATCACCAAGCTGAAGCCATGGGGGTTACTAGAGGTGCTGCAGGATAAGTACGAGTGGTCCAAAGAGGAGGCTGATTGTTTCGCTGACTTCCTCCTCCCCATGCTGGAGCTGGTACCAGAGAAGAGAGCCACGGCTGCAGACTGCCTGCGCCACCCCTGGATCGCCCCCCAGTGACGGCCCCCCAGTACTGCAATGCAAAACACCTAGGGCCTGTTCAGTCGACAAACGTTTTTGAATGTTGCAGCTAATTCGAATGACTGGAGCTGACTTAACT

Function

NR:

description
SRSF protein kinase 1-like

GO: NA

KEGG:

id description
K15409 SRPK1; serine/threonine-protein kinase SRPK1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947695.1 False 2270 mRNA 0.54 15 70445023 70463950
XM_036947696.1 True 2256 mRNA 0.54 15 70445025 70463950

Neighbor

gene id symbol gene type direction distance location
si:ch211-207e14.4 LOC106566413 coding upstream 1036 70432898 ~ 70443987 (+)
LOC110492662 NA coding upstream 17471 70426100 ~ 70427552 (+)
plpbp prosc coding upstream 22518 70411676 ~ 70422505 (+)
snrpg LOC106572841 coding upstream 33598 70403323 ~ 70411425 (+)
si:ch211-148l7.4 LOC106566411 coding upstream 42413 70394785 ~ 70402610 (+)
LOC118939481 NA coding downstream 4258 70468208 ~ 70468967 (+)
LOC118939465 NA coding downstream 307557 70771507 ~ 70772049 (+)
trnah-gug-7 NA coding downstream 349250 70813200 ~ 70813271 (+)
trnah-gug-8 NA coding downstream 351599 70815549 ~ 70815620 (+)
trnah-gug-9 NA coding downstream 353958 70817908 ~ 70817979 (+)
G1405741 NA non-coding upstream 34490 70410094 ~ 70410533 (+)
G1405731 NA non-coding upstream 57000 70387770 ~ 70388023 (+)
G1405724 NA non-coding upstream 72459 70370967 ~ 70372564 (+)
G1405719 NA non-coding upstream 83129 70361637 ~ 70361894 (+)
G1405789 NA non-coding downstream 77638 70541588 ~ 70546404 (+)
G1405805 NA non-coding downstream 103342 70567292 ~ 70571205 (+)
G1405817 NA non-coding downstream 136857 70600807 ~ 70607045 (+)
G1405823 NA non-coding downstream 146778 70610728 ~ 70611352 (+)
G1405830 NA non-coding downstream 162102 70626052 ~ 70626926 (+)
G1405676 NA other upstream 187593 70256822 ~ 70257430 (+)
G1405605 LOC106566425 other upstream 312722 70129921 ~ 70132301 (+)
G1405310 LOC106566443 other upstream 772349 69671464 ~ 69672674 (+)
G1405218 NA other upstream 858117 69585989 ~ 69586906 (+)
G1405216 NA other upstream 861397 69580729 ~ 69583626 (+)
G1406381 NA other downstream 505665 70969615 ~ 70972604 (+)
G1406424 NA other downstream 738492 71202442 ~ 71206092 (+)
G1406505 NA other downstream 746322 71210272 ~ 71210764 (+)
G1406507 NA other downstream 750427 71214377 ~ 71216430 (+)
G1406508 NA other downstream 781623 71245573 ~ 71246023 (+)

Expression


Co-expression Network