LOC118939579


Basic Information

Item Value
gene id LOC118939579
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 70455694 ~ 70552795 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036615.1
ggCGTGGATAGGTTAATTAACACATAGCAGgttattacgtaacagaaaagctgtaaaagaggGTGGATAGGTTAATTAACACATAGCAGGTTATTACGTAacagaaaagctgtaaaagatGGGTGGATAGGTTAATTAACACATAGCAGgttattacgtaacagaaaagctgtaaaagaggGTGGATAGGTTAATTAACACATAGCAGGTTATTACGTAacagaaaagctgta
>TU1606041
cagtgaaagtagCGTCCCTGACATTTACTATGCTGCTTTACCAGGCACCCTAAATAAGAGATGgttattacatagcagaaaagctgtaaaagatGGGTGGATAGGTTAATTAACACATAGCAGGTTATTACGTAacagaaaagctgtaaaagaggGTGGATAGGTTAATTAACACATAGCAGGTTATTACAtagcagaaaagctgtaaaagaggCGTGGATAGGTTAATTAACACATAGCAGGTTATTACGTAacagaaaagctgtaa
>TU1606042
ATAGGTTAATTAACACATAGCAGGTTATTACGTAACAGAAAATCTGTAAAAGAGGGTGGATAGGTTAATTAACACATAGCAGgttattacatagcagaaaagctgtaaaagatGGGTGGATAGGTTAATTAACACATAGCAGGTTATTACGTAacagaaaagctgtaaaagaggGTGGATAGGTTAATTAACACATAGCAGGTTATTACAtagcagaaaagctgtaaaagaggCGTGGATAGGTTAATTAACACATAGCAGGTTATTACGTAacagaaaagctgtaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036615.1 False 233 mRNA 0.36 3 70457921 70458559
TU1606041 False 268 lncRNA 0.37 3 70455694 70552795
TU1606042 True 287 lncRNA 0.34 3 70455694 70458552

Neighbor

gene id symbol gene type direction distance location
tmed4 LOC106566412 coding downstream 31886 70422429 ~ 70426035 (-)
LOC110492649 LOC106566409 coding downstream 175682 70229839 ~ 70282239 (-)
LOC110492660 LOC106566428 coding downstream 236369 70216538 ~ 70221552 (-)
LOC118939578 NA coding downstream 270063 70185375 ~ 70187858 (-)
LOC118936543 LOC106566425 coding downstream 324641 70127253 ~ 70133280 (-)
LOC110492786 LOC105023799 coding upstream 82991 70541550 ~ 70754162 (-)
trnat-agu-43 NA coding upstream 544792 71003351 ~ 71003424 (-)
trnah-gug-30 NA coding upstream 545812 71004371 ~ 71004442 (-)
trnat-agu-44 NA coding upstream 546168 71004727 ~ 71004800 (-)
trnah-gug-31 NA coding upstream 547188 71005747 ~ 71005818 (-)
G1406097 NA non-coding downstream 1698 70453887 ~ 70456223 (-)
G1406091 LOC106566414 non-coding downstream 4603 70452235 ~ 70453318 (-)
G1406075 NA non-coding downstream 63621 70389608 ~ 70394300 (-)
G1405985 NA non-coding downstream 231917 70223162 ~ 70226004 (-)
G1405958 NA non-coding downstream 320184 70137387 ~ 70137737 (-)
G1406099 NA non-coding upstream 3130 70461689 ~ 70462523 (-)
G1406100 NA non-coding upstream 5111 70463670 ~ 70466262 (-)
G1406172 NA non-coding upstream 171097 70629656 ~ 70630583 (-)
G1406238 NA non-coding upstream 296198 70754757 ~ 70754978 (-)
G1406244 NA non-coding upstream 299102 70757661 ~ 70757947 (-)
G1405917 NA other downstream 362380 70078657 ~ 70095541 (-)
G1405172 NA other downstream 939808 69517755 ~ 69518113 (-)
G1405016 nsfl1c other downstream 1177562 69277827 ~ 69280359 (-)
G1404974 LOC106566438 other downstream 1250763 69203286 ~ 69207158 (-)
G1406228 NA other upstream 277088 70735647 ~ 70742179 (-)
G1406514 NA other upstream 801763 71260322 ~ 71260817 (-)
G1406752 NA other upstream 1043920 71501118 ~ 71547366 (-)
G1406760 NA other upstream 1081399 71539958 ~ 71543469 (-)
G1407628 NA other upstream 1873247 72331806 ~ 72332715 (-)
trnah-gug-32 NA coding upstream 454328 71007123 ~ 71007194 (-)
G1405919 NA non-coding downstream 320594 70134770 ~ 70135100 (-)
G1406274 NA non-coding upstream 231961 70784756 ~ 70785451 (-)
G1406282 NA non-coding upstream 239005 70791800 ~ 70792201 (-)

Expression


Co-expression Network