trnat-cgu-7


Basic Information

Item Value
gene id trnat-cgu-7
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 70907337 ~ 70935898 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnat-cgu-7
ggcgctctggcttagttggttaaagcgcctgtctcgtaaacaggagatcctgagttcaaatctcagcagagcct
>TU1606328
tcaaaagggttgtattttgaatgagttgaaacctcctgtgtgagctaagaaactcaataactcttccatttgacaaagtctccatctcatggtaggttaattacttacattaactgattcatctgctttttcttaggtttttaccatttttaatctcgagatccaactgagaactgtagtttccccgaaacgaccaaaattatgaagaaatcgtgtatgattctgaatgtttactcatatctcgcgatattcccactttgggtcccaaaccatagtttaagaatccatgtcagagtatcttgagtttattcagttcgagacccaaatgaaaaatgtactgtcctcggatgaccgaaattaagaagaaatcgcttgtgactcaaaatgtttactgatatcgcgctgcccacctctcacatactcaggcccactttgggtcccaaaacatagcttaagaaaccctgttgctagacaattgaaggagtccatatcgattccaatattagtaaataacatctgttttgtgacgtgattttgcaagacagagatatgggttaaatgaatgagacatgtttgatataaatacgtgtggcggtgttcttacctggaacatacttggcatctacaggcgctctggcttagttggttaaagcgcctgtctcgtaaacaggagatcctgagttcaaatctcagcagagccttttcaaacattggtggagagtgttctgcttttctcaaccaatgagtcttgagaatttggagtgatgtgaggaggatgcaattgagatattccaatttcacggaaaaagggaactttttcaaagaattacaacgtaccaactatctcaagttcagctggttcttcagttgattcatttcgagtgctaaatgaagagttcagccagcttgtacaggtctctgtcagagcatgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnat-cgu-7 False 74 mRNA 0.57 1 70935593 70935666
TU1606328 True 933 lncRNA 0.40 2 70907337 70935898

Neighbor

gene id symbol gene type direction distance location
trnat-agu-20 NA coding upstream 2051 70933469 ~ 70933542 (+)
trnat-agu-19 NA coding upstream 4194 70931326 ~ 70931399 (+)
trnat-agu-18 NA coding upstream 5256 70930264 ~ 70930337 (+)
trnat-agu-17 NA coding upstream 6318 70929202 ~ 70929275 (+)
trnat-agu-16 NA coding upstream 7380 70928140 ~ 70928213 (+)
trnat-agu-21 NA coding downstream 2483 70938109 ~ 70938372 (+)
trnat-cgu-8 NA coding downstream 4626 70940292 ~ 70940365 (+)
trnat-agu-22 NA coding downstream 5673 70941339 ~ 70941412 (+)
trnat-agu-23 NA coding downstream 7182 70942848 ~ 70942921 (+)
trnat-cgu-9 NA coding downstream 8244 70943910 ~ 70943983 (+)
G1406366 NA non-coding upstream 29867 70905291 ~ 70905726 (+)
G1406362 NA non-coding upstream 34134 70901026 ~ 70901459 (+)
G1406357 NA non-coding upstream 36357 70898403 ~ 70899236 (+)
G1406354 NA non-coding upstream 38922 70895693 ~ 70896671 (+)
G1406350 NA non-coding upstream 42729 70892431 ~ 70892864 (+)
G1406411 NA non-coding downstream 156239 71091905 ~ 71092173 (+)
G1406447 NA non-coding downstream 216783 71152449 ~ 71153222 (+)
G1406453 NA non-coding downstream 234014 71169680 ~ 71170260 (+)
G1406459 NA non-coding downstream 248876 71184542 ~ 71185729 (+)
G1405676 NA other upstream 678163 70256822 ~ 70257430 (+)
G1405605 LOC106566425 other upstream 803292 70129921 ~ 70132301 (+)
G1405310 LOC106566443 other upstream 1262919 69671464 ~ 69672674 (+)
G1405218 NA other upstream 1348687 69585989 ~ 69586906 (+)
G1405216 NA other upstream 1351967 69580729 ~ 69583626 (+)
G1406381 NA other downstream 33949 70969615 ~ 70972604 (+)
G1406424 NA other downstream 266776 71202442 ~ 71206092 (+)
G1406505 NA other downstream 274606 71210272 ~ 71210764 (+)
G1406507 NA other downstream 278711 71214377 ~ 71216430 (+)
G1406508 NA other downstream 309907 71245573 ~ 71246023 (+)
si:ch211-71n6.4 pnba coding upstream 15521 70867461 ~ 70891816 (+)
trnah-gug-29 NA coding upstream 39838 70867428 ~ 70867499 (+)
trnah-gug-28 NA coding upstream 40147 70867119 ~ 70867190 (+)
trnah-gug-27 NA coding upstream 41619 70865647 ~ 70865718 (+)
trnah-gug-26 NA coding upstream 50148 70857118 ~ 70857189 (+)

Expression


Co-expression Network