LOC110491184 (LOC106572946)


Basic Information

Item Value
gene id LOC110491184
gene name LOC106572946
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 71286546 ~ 71362472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945798.1
ACAGAAATTGTTCACCCAATCAGACTAGCTGTAGTCGTGTTGTTGCCGTGACTGCTGTGTCACGCTGCTCCGCTCTAGCAGATAGCAGCCCGAAGCGACCAGAGAGAGATAAAAAACTGCCGCGTTGGAGAGTGAACgcaatgagggaggagagggaagagggagattAAGAATTAGAGTTGGGGATAGATGGAGAATTAGAGGTGGGGCTAGATGAAGAGATTGAGGTCCGTGTAAAAGGAGAAGATAGAGCTGAGGACCATCGacatttctcctcttctctcttaacAATGCACCTCTACCTGAAATAACAGAAGCATGCGTATGAGAACGAATCCCCGGAGCGCGTCTCTCCAGGAGCGGATATCGAGCCAAATTAATGACAGGAAGGAATAACGGTTTTACGCACCAGGACCGACGTGGGTTCGTTAGCAACAATGTGGTGCATCAACTGCGCCTCAGACAAGACTCCTGTTATTCTAAATAACAACAAGCTGATACACTGtGTGGAAGAGCCTCACCGTGACGACACAGGCAGTTTCTCCGACAGCACCTGTAGACAGGGACCCTACCTAAGCAGCTCTGATCATCGCTACAACAGTGGCCCCGGCCCACTGGGCCACCACCCCCAGGGCCACCCGGTGGCCCCCCCTAGCCCTGCCTCCCTGGCCTGGGCCCAGAGGACCTGGCACCAGCCTGCCAGCCTGGCACTCCggaagcaggaggaggaggacaacaggCGCTGCAAAGCCCTGTCCGACAGCTATGAGCTCTCCACAGACCTACAGGACAAGAAGGTGGAGATGCTGGAGAGGAAGTACGGAGGGTACTTGCTCAGTCGGCAGGCGGCGCGCACCATCCAGACGGCGTTCCGTCAGTACCGCATGAACAAGAACTTTGAGCAGCTACGAAGCTCCGCCTCCGAGAGCCGGATGACTCAACGTATCATCCTGTCTGACATGAGACTGCAGTACTCGTTTGACGAGCGGCAGGGCCAGCCCCAGGGCCAAGGGGTTCAGCAGGGACAGAGGTATCCTCACCCTGGAGGCCACCCTGGGGATGAAGAGATGCAGGCCGGGTCTCCTCCACGCggtgagggggacagagaggagtacACATACCTGGACGAGACCTTCtccaaacagGTGAAGTCCCTGGCTGACTCCATTGATGACACCCTGACCTGTCAGTCTGGTGTGGAAGACGgtcagcaggaggaggaggaagaggaggaggaaggtgacGGAGACGAGACAGGGGTGGAGGTGGACGACTTTGGAGAGTGTGTTTGGAGGcccagggagggagacagacagagggatggaggaagaggaggagtgggaggaagagtagtaggaggaggaggagagagacagagcatgcACGAAGAAAGCATAGCCACCTCCTACAACGACGTGACCCTCTACATGGATGGCAGGCTCTCGTCCTCTCCCCTGTCCTTGGACCGGGCCCCCAGCAGCCCAGATACAGAGTACTGGAGCCCTGGAGTGTGTGGCGGCAGGGTGGGGGGAGGGGAAAACAGCCGGGACACAGAGGGAGGGGGCAACAGTAACAGACGACACAGCACCCCCTGTACAGAGTGTAGAGACTACAGCCTGAGAGAAGCTCACCTACCCCTGTTGACCCTCGAACCCCTGAGCGACAGCTCTGTTGATATGAATGACCGCTCGGGCTCTATAGGCCGACAGGTCTACGAGACAGACCCAGGGGGAGGAGTTGGTGGAGGGGGGTCGCCTCAGGGCACAATTAAACATAACCCCCACCCAAAGCCTCACCCCAACCCCAACGGGCGTGCTGTCCCCATACCTCCCCAGGCCCAAGGCCAGACTCGTACTGTGCTCCCtcaccacccccacccctcggCCATCCCCTCCCACCTGCCCTACCATACCATcctacaccaccaccatcagctCCCATATTACCCTCTACACCCCCACCACCCGCACCCCaataccccctcctcctcctctcagtccCCCCAGGGACCACCCCTCACCCCCCTATTTTCCTCCTCATCAGCCACACTGCCCCCTGGTGGCCAGGAGCAGGTCTGCTGTTCTGACGGAGACAACGACTCTCTCAGCTCCACCACCAACTCTAACGACACCATCAACTGCTCCTCCGGGTCCTCATCGCGCGACAGCCTCCGGGAGCCCCTCCCACCGCTCGGGAAACAGACCTATCAGAGAGAAAGCAGACACAGCTGGGATAACCCCGCCTCTAACAATGACGTGGTGCAGAGACGACAGTACCGCATcggactcaacctgttcaacaaGAAGCCAGAGAAGGGTATACAGTACCTGATAGAGAGAGGCTTCGTATCGGACACACCGGTAGGCATCGCCCGCTTCATCCTGGAGAGGAAAGGACTGAGCAGACAGATGATAGGAGAGTTTCTGGGCTGCAGACAGAAACAGTTCAACAAGGACGTACTGGATTGTGTGGTAGATGAGTTGGACTTCTCAGGGATGGATCTAGATGATGCCCTCAGGAAGTTTCAGGCCCAGATTAAAGTCCAGGGAGAGGCCCAGAAGGTGGAGAGACTGATCGAGGCTTTCAGTCAGCGGTACTGTGTGAGTAACCCGGTGCTGATCCGACAGTTCCGGAACCCCGACACCATCTTCATCCTGGCCTTCGCCATCATCCTCCTCAACACTGACATGTACTCTCCCAACGTTAAACCAGAGAGGAAGATGAAGTTGGAGGACTTCATCAAAAACCTCAGAGGAGTGGATAGTGGCCAGGACATTCCCAGAGACCTGTTAATAGGAATCTACCATCGGATAGAGAAGTGGGAGCTACGCACCAACGATGACCACGTGTCTCAAGTACAGGCTGTGGAGAGGGTTTTGGTCGGCAAGAAGCCTGTGCTCTCGCTGCCACATCGCAGATTGGTGTGTTGCTGTCAGCTGTACGAGGTGCCTGACCCCAACAGAAACCAGAGGACTGGAGTCCACCAGAGAGAAGTCTTCCTCTTCAACGACCTGCTCGTGGTAACCAAGATCTTCCAGAAGAAGAAGACCTCTGTGACATACAGTTTCAGACAGTCCTTCCCCCTGGTCGAGATGCAcgttcacattttccagaaacaatACTATCCCCACGGTATCCGTCTGACGTCAGCCAACCCTGGTGGGGACAGAAAGGTTCTGATAGTGTTTAACGCGCCGAGCCAGCAGGACAGAACGCGTTTTACCTCCGACCTGAGAGAGAGCATCGCTGAGGTGACGGAGATGGAGAAATACAGGGTTGAGTcGGAGTtggagaagcagagaggagtGATGAGGCCTGTTGTGGCCGGGCCTGACGGTGGTGGTCCCAGCGGCGGCGTGAAGGCGGTGAACGGCATTCTGCGTAGGCCCAGTCTGGACGACAGCTATGCCTCTGCAGATGGACTCAAACGTACTGCGCTCAGCTCATCACTGAGAGACCTAGCAGACAcagGAAAGCGGGGCCGCCGGAACAGTGTTGGCTCTCTGGACAGCACTATGGAAGGCTCCATCATTAACAGTCCCAGGCCTCATCAGCGCCCCCACATGGCTGGGGGTGTAATGCCACCCGGCTGCTATGACATCCAAGACTACCGGCCTCACCACCCCATCCTGAGCCCCGGgacgggggtggggggtgggCCGGGGCTAAATCACAATACCGCTACTGGGACGACGGCACTGGGTCCCAGCAGCGGAGACCGAGGGGGGACGGGAGCCCTGGGGAGCGggtctggagggggagggggcagtGGAGGCTCCTTCCTGGGTTCCCTGTTTGGGAGCAAGCGCTCCAACACCAAGCCCCCtggtcctctcccctctctcccccctctcctcccacctggGCTGCCACACTACCCTGCACCTGTCCCCCCGCCCACCACCGGCGGCCCGCCCCCACACTCCCCCTCCGCCCTCAGCAACTCCGACCCAGGAGGGCCCTCCAAGATCCAGGCCCTGCACGCCCAGTACTGCCACAACAGTACCGCAGGGCAGCAGCCTCCTCCAtcctactaccatcaccaccaccgcTACCACGCCCAGACAGGGCCCGCTCCCAGTCAGCCCTCCTCCACCGCCCAGGGGGCCCCTGGGCCTCATACCATCAACAGGGGCCCCCTGGTTGGGGTCCCCAAGCGGCCGGGCCCCGCTCCTGCTCCCTCCCAGCTGCTGCAGCATGGTGTACAGGGTCAGGGGGGGTTCTATACCAACATGGGAATTTCTATGGGGGTAGGCTGCCCCCCTCCGCCCCTTTCTCCACATTCTCCTCACTCCCCTGGGCCCCCGACCCTCTAccacacacactccactcacggtcgaggaggaggagaagtcgCCAagctccctcttactctctcgcGCTCGCAGCCCCACCCTCACGCCCACACCCATGTCCCTCATCTTACTGCTCATTCCCACAACCACAGCCCCCATCCCGGCCTTTCCCTCAGCCCCCATCTCGCCCAACACCCTCAGCACCAGACTCACTTCATCTTTGCCGCCCCGCCCCCACAGACCCCTTCCGCCCGGCACGTTCCACAGGCCGACGCCcacagccacgcccagtaccTCCCGCTCTCCTCcataccccctccccctcctcactcCCCTTtaccccccccttcctcccctcacACCCCgcttacccctctctccccctacacccTCCAGCTCCAGCCG

Function

NR:

description
PREDICTED: IQ motif and SEC7 domain-containing protein 2-like

GO: NA

KEGG:

id description
K12495 IQSEC; IQ motif and SEC7 domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945798.1 True 4700 mRNA 0.59 14 71286546 71362472

Neighbor

gene id symbol gene type direction distance location
LOC118939583 NA coding upstream 88513 71196255 ~ 71198225 (+)
LOC118939582 LOC106566316 coding upstream 93498 71103181 ~ 71193739 (+)
trnan-auu-2 NA coding upstream 288759 70997717 ~ 70997787 (+)
trnan-auu NA coding upstream 293083 70993393 ~ 70993463 (+)
trnat-agu-42 NA coding upstream 294159 70992314 ~ 70992387 (+)
LOC110491185 LOC106566323 coding downstream 18883 71381355 ~ 71412264 (+)
LOC110517572 LOC106572960 coding downstream 56304 71418776 ~ 71500706 (+)
trnat-agu-71 NA coding downstream 187034 71549506 ~ 71549579 (+)
trnat-agu-72 NA coding downstream 188124 71550596 ~ 71550669 (+)
trnat-agu-73 NA coding downstream 192477 71554949 ~ 71555022 (+)
G1406529 NA non-coding upstream 13178 71273091 ~ 71273368 (+)
G1406528 NA non-coding upstream 13713 71272616 ~ 71272833 (+)
G1406526 NA non-coding upstream 14767 71271579 ~ 71271779 (+)
G1406523 NA non-coding upstream 18894 71267449 ~ 71267652 (+)
G1406522 NA non-coding upstream 21032 71265297 ~ 71265514 (+)
G1406573 NA non-coding downstream 16096 71378568 ~ 71379119 (+)
G1406556 NA non-coding downstream 50495 71412967 ~ 71413312 (+)
G1406555 NA non-coding downstream 52896 71413557 ~ 71416427 (+)
G1406672 NA non-coding downstream 66223 71428695 ~ 71429226 (+)
G1406510 NA other upstream 29569 71255979 ~ 71256977 (+)
G1406509 NA other upstream 34902 71251074 ~ 71251644 (+)
G1406508 NA other upstream 40523 71245573 ~ 71246023 (+)
G1406507 NA other upstream 70116 71214377 ~ 71216430 (+)
G1406505 NA other upstream 75782 71210272 ~ 71210764 (+)
G1407190 NA other downstream 740914 72103386 ~ 72103841 (+)
G1407199 LOC106566391 other downstream 853841 72216313 ~ 72279555 (+)
ngrn ngrn other downstream 1279511 72641881 ~ 72646008 (+)
G1407509 NA other downstream 1403430 72765902 ~ 72769218 (+)

Expression


Co-expression Network