LOC110517572 (LOC106572960)


Basic Information

Item Value
gene id LOC110517572
gene name LOC106572960
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 71418776 ~ 71500706 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945799.1
TCCTGTCCAACCTCAACTCACCCTAGGAAACTTTTCCTACAGGAGCTCAACCCCTGCAGCTGAAAGCACAGCTACCCACGGAGCTACGCTGTTTTGTGGGCAGGGACTCGACTCGCTGGCGGTCATTCATCCTACGTAAACACCACACGGACCATCTATGTGGATGAGTTGTATTTCTACAAGCGGATGGTTAACAGAGAGAAGTGTCAGTCTATGAGAGcaGGTAATTGGTGCCATGCCAGCTGCTTCTCCCCCTCTGCTCCCCCTTGCCACCTGGTGGTGGTGTCTGGTACTGTTGCTGCCCCCACAGCCCCAGGCCCTGACCCAGCTCCAGCCGGACCCTAACCCAGAGAAGGCCTCTCACGCTGGGCAGGCcttccctcacctctccctgGATGGATCTCCCCTCAGCCACCTCCTCCTGGACTCCAGGTCTGGTCATCTGTACGTGGGGGCGGTCAACCATCTCTACCACCTGTCCCCTGACCTCCAGGTGCTCTCCTCCAGTCAGACTGGCCCCAAACTGGACAGTGCCGAGTGCTTGCCCCCCATCGTCCCCAAGGACTGCAGTACCGCACACCTGACCCCCAACGCTAATAAGATCCTTCTGCTAGAGGAGGGTCTGGCCTCAGCAGGGTCAGAGGTCGGGGCGAGGAGCCTGATCGTGTGTGGAACCCTGTTCCAGGGTATCTGTGAGAAGAGGAGTTTGGATAATGTGTCCGAGGTACTGTACCAATCCTCCAATCCGGTAGACACGCAGTACGTAGCCGCCAACGACCCCCGCGTCTCCACCGTGGGTGTGGTCTTGAACCAAAAGGGTGTGGGGCTTTTGCTGGTGGGGCGTGGCTACACCAGTAAAGGCCCCAGCGACATCCCACCAATCACAACTCGCCGTTTGGCCCCCAGCTCCTCCCCCGCCCGCCAGGCCTTCTCTCAAGACGAGGAACTAGGGAAGCTGGTTGTCGGGAGCTACTCTGAGTACAACAACTACTTCATCTCCGCGCATCATCATGGCGACCATGTTTACTTCCTGTTCTCGCGGAGGGATATGTGGAACCGGAAGGAGTACCGGACCTACGTTTCCCGTCTCTGCGCCCGGGACCGGAGCTTCTACTCCTACGTGGAGGTTCCGTTAGAATGTTCCGGGGGTTATAACCTCGCCCAGGGGGCTACCCTCGCCAGACACCAGGGGCGGCCGACGCTGTTCGTTGCCATGGCGGCGGGGCAGGCGTCGACGCCCACGGCGACGGGTCGCTCGGCGCTGTGTGTTTATGGGATGTCAGAGCTGGATGCGTCGCTGCAGAGGGCCCAGGAGCTGTGTTatacagagggaggaagaggaaggacgGGACAGGAGGAGGCATACATAGAGTATGAGGTGTCGTCCAAGTGTCTACGGCTGCCCAAGGATTCGTTAAAGAAGTACCCGTGTGGAGGGGAACACACCCCCAGCCCCATCGCCTCTGCTgttcccctgtcagccacccCCTCTCTGACCAGGGACACTCTACTCACCGCGGTCACCACCACTACCGAGGCCGGCCACACCATCGCTCTGCTCGGGGACAAGAAAGGATGGCTGCACAAGGTATTTCTCCAGACTGACACAACGGGGACGTTGTATCAGAGTGTATTGGTGGACCAGGACAGTCCAGTCAACGCTGACCTACTACTGGACCAGTCTGGACAGAATGTCTACGTCCTCACTGATGGCAAGGTAACCCCTAGCCACTacccctag
>TU1606753
CCAGGAGCTGTGTTatacagagggaggaagaggaaggacgGGACAGGAGGAGGCATACATAGAGTATGAGGTGTCGTCCAAGTGTCTACGGCTGCCCAAGGATTCGTTAAAGAAGTACCCGTGTGGAGGGGAACACACCCCCAGCCCCATCGCCTCTGCTgttcccctgtcagccacccCCTCTCTGACCAGGGACACTCTACTCACCGCGGTCACCACCACTACCGAGGCCGGCCACACCATCGCTCTGCTCGGGGACAAGAAAGGATGGCTGCACAAGGTATTTCTCCAGACTGACACAACGGGGACGTTGTATCAGAGTGTATTGGTGGACCAGGACAGTCCAGTCAACGCTGACCTACTA

Function

NR:

description
plexin-B1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945799.1 False 1741 mRNA 0.59 5 71418776 71500706
TU1606753 True 364 lncRNA 0.57 3 71482114 71500637

Neighbor

gene id symbol gene type direction distance location
LOC110491185 LOC106566323 coding upstream 7763 71381355 ~ 71412264 (+)
LOC110491184 LOC106572946 coding upstream 56304 71286546 ~ 71362472 (+)
LOC118939583 NA coding upstream 220743 71196255 ~ 71198225 (+)
LOC118939582 LOC106566316 coding upstream 225728 71103181 ~ 71193739 (+)
trnan-auu-2 NA coding upstream 420989 70997717 ~ 70997787 (+)
trnat-agu-71 NA coding downstream 48800 71549506 ~ 71549579 (+)
trnat-agu-72 NA coding downstream 49890 71550596 ~ 71550669 (+)
trnat-agu-73 NA coding downstream 54243 71554949 ~ 71555022 (+)
trnat-agu-74 NA coding downstream 55333 71556039 ~ 71556112 (+)
trnat-agu-75 NA coding downstream 59698 71560249 ~ 71560716 (+)
G1406555 NA non-coding upstream 2398 71413557 ~ 71416427 (+)
G1406556 NA non-coding upstream 5464 71412967 ~ 71413312 (+)
G1406573 NA non-coding upstream 39657 71378568 ~ 71379119 (+)
G1406531 NA non-coding upstream 47122 71275327 ~ 71371654 (+)
G1406710 NA non-coding downstream 1864 71502570 ~ 71503594 (+)
G1406739 NA non-coding downstream 37221 71537927 ~ 71541379 (+)
G1406773 NA non-coding downstream 103165 71603871 ~ 71606427 (+)
G1406785 NA non-coding downstream 118841 71619547 ~ 71619958 (+)
G1406510 NA other upstream 161799 71255979 ~ 71256977 (+)
G1406509 NA other upstream 167132 71251074 ~ 71251644 (+)
G1406508 NA other upstream 172753 71245573 ~ 71246023 (+)
G1406507 NA other upstream 202346 71214377 ~ 71216430 (+)
G1407190 NA other downstream 602680 72103386 ~ 72103841 (+)
G1407199 LOC106566391 other downstream 715607 72216313 ~ 72279555 (+)
ngrn ngrn other downstream 1141277 72641881 ~ 72646008 (+)
G1407509 NA other downstream 1265196 72765902 ~ 72769218 (+)
LOC110492598 LOC106566362 other downstream 1308024 72808730 ~ 72818165 (+)
G1406672 NA non-coding upstream 52888 71428695 ~ 71429226 (+)

Expression


Co-expression Network