LOC118936314 (nattl)


Basic Information

Item Value
gene id LOC118936314
gene name nattl
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 72216314 ~ 72224253 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567134.2
CTTAATCAGGGTCAAAGGGTTTGTgtcaatttcaatagaaaactactGACACACACTTTATTTGCATGAGGGGAGTTTTGCTGCTATATAAGAGAGTGCTTCTCCACTCCAGAGACACGTATTCAGCTGTTGCATCTTTTGGTGTTAAACAATTGAACTTCACTCGAAATCTCGGAACCAATCAGTTTTCTTCCATCAAGATCTTCTATAGTCATCCTTAACGCTGAGGCCTGCATATCATTGTATGTTACGTGACGCACACTCAAACTCTCAACATGGCAACCACACTGCATTTGATTGGTGGTGGAGGAGGCAGTTCATTTGAATTCCACGGCATGAAAAACGGTGCCACCCTCAAGAAGATCGGAGTGGCGGTGGAAGGCTGGCAGGTGAAAGCTGTGCGGGCGGAGCTTACCGACGGGCGCGTTGAGACCTTTGGAAATTCGCACACTTTCAGTGAGTTTGAGTTCGACCTCGGCGAGCGCATCACCAAGCTGTCTCTGTGGGGTAACGGCGCCGGCACACGTCTGGGTGCCATCAAGTTCAAGACGAGTAAGAACCGGGAGTTCTTTGAAAAAATGACCAGCTGGCCACTGAAGACTGAGTACACCATAGATGTGGGGTCTGGAATCTGCCTGGGGCTGCAGGGCAGGTCTGGCTCGGACATCGACAGCATGGGCTTCCTCTTCATCAACACTATCAAGTCGTCCGTGCTGACCGACATGGAGtatcccaccctgtctctcttcaAACCCCAGGTGACCCCAGAATATGTGAAATCCGTTTCTCACCACAATGACACCTCCTTGGTTCAAGAAGAATCCATTACATACAGCAAGACCCTGACCAAGACTTCCTCCTGGTCCGTCAGCAACAAGATAGAATCCACCTTGAATGTGTCGGTCAAAGCAGGGATCCCGGATCTGGTTGAGGTGTCATCAGGGTTCAGCTTGACCGTGGGAGTGCAGCAATCCACCAGCCTGCAGAAGACAGAGACCATAACAGAATCGGATACCATCAGCCTGAAGATCCCTCCAGGGAAGACCATGGATGTTGAGATCACAGTGGGGAAAGCAAATATCGACCTCGACTACAGAGCCACAGTGAAAGTCACCTGCATGAACGGCAGTCAGCTGGTCTTCCCATCCAACGGCATCTACACCGGTGTGACTTACACTTCAGCGAGGGTATCCACAAAGGAGAGATGAGACAAGTGTATGACATCCTGAATAATAAGCACAGTGATAGAATATGACACAATGACTAATTCTTTGTGTGCCTTCTCTGTTATTATGATCTTCTTTTGAGCGATTCTAATTGAACCATGTTGACTCAGCTCTTTATTTCTGTCTCGGCAGAGGGTATAACAACAGGTGGGTCATTCCTACAATCCGGTGCCTTTTTTTGTCCAATGACATGTTAACACATGTTTTGTGTGAATTATTGAACAACATTCACCACAAAATGTTTTCTTATATGGTTAGATGCCCATTTACCATAAAAAACAATGTTATGTAACTAAAATGAATTAAAGTTGTAATAAACCATTTGTCTGGTGTGTCAGTAAGCTTTCGCCCTATCCCCAGTTAAGTTTATTCATCTTCCATTAGATATACTATTCATAAAATTCACAAATATTGTGAGCATTCATTTCAAAAGGTTGTGTTATATACGGTTACACCCCCATTTCCCATTAAAAAAACAATGTTAAGTAACGATAtcatttcatgaatattaaaCCATTTTTATGTTAAACCA
>XM_021567133.2
TCTTAATCAGGGTCAAAGGGTTTGTgtcaatttcaatagaaaactactGACACACACTTTATTTGCATGAGGGGAGTTTTGCTGCTATATAAGAGAGTGCTTCTCCACTCCAGAGACACGTATTCAGCTGTTGCATCTTTTGGTGTTAAACAATTGAACTTCACTCGAAATCTCGGAACCAATCAGTTTTCTTCCATCAAGATCTTCTATAGTCATCCTTAACGCTGAGGCCTGCATATCATTGTTACGTGACGCACACTCAAACTCTCAACATGGCAACCACACTGCATTTGATTGGTGGTGGAGGAGGCAGTTCATTTGAATTCCACGGCATGAAAAACGGTGCCACCCTCAAGAAGATCGGAGTGGCGGTGGAAGGCTGGCAGGTGAAAGCTGTGCGGGCGGAGCTTACCGACGGGCGCGTTGAGACCTTTGGAAATTCGCACACTTTCAGTGAGTTTGAGTTCGACCTCGGCGAGCGCATCACCAAGCTGTCTCTGTGGGGTAACGGCGCCGGCACACGTCTGGGTGCCATCAAGTTCAAGACGAGTAAGAACCGGGAGTTCTTTGAAAAAATGACCAGCTGGCCACTGAAGACTGAGTACACCATAGATGTGGGGTCTGGAATCTGCCTGGGGCTGCAGGGCAGGTCTGGCTCGGACATCGACAGCATGGGCTTCCTCTTCATCAACACTATCAAGTCGTCCGTGCTGACCGACATGGAGtatcccaccctgtctctcttcaAACCCCAGGTGACCCCAGAATATGTGAAATCCGTTTCTCACCACAATGACACCTCCTTGGTTCAAGAAGAATCCATTACATACAGCAAGACCCTGACCAAGACTTCCTCCTGGTCCGTCAGCAACAAGATAGAATCCACCTTGAATGTGTCGGTCAAAGCAGGGATCCCGGATCTGGTTGAGGTGTCATCAGGGTTCAGCTTGACCGTGGGAGTGCAGCAATCCACCAGCCTGCAGAAGACAGAGACCATAACAGAATCGGATACCATCAGCCTGAAGATCCCTCCAGGGAAGACCATGGATGTTGAGATCACAGTGGGGAAAGCAAATATCGACCTCGACTACAGAGCCACAGTGAAAGTCACCTGCATGAACGGCAGTCAGCTGGTCTTCCCATCCAACGGCATCTACACCGGTGTGACTTACACTTCAGCGAGGGTATCCACAAAGGAGAGATGAGACAAGTGTATGACATCCTGAATAATAAGCACAGTGATAGAATATGACACAATGACTAATTCTTTGTGTGCCTTCTCTGTTATTATGATCTTCTTTTGAGCGATTCTAATTGAACCATGTTGACTCAGCTCTTTATTTCTGTCTCGGCAGAGGGTATAACAACAGGTGGGTCATTCCTACAATCCGGTGCCTTTTTTTGTCCAATGACATGTTAACACATGTTTTGTGTGAATTATTGAACAACATTCACCACAAAATGTTTTCTTATATGGTTAGATGCCCATTTACCATAAAAAACAATGTTATGTAACTAAAATGAATTAAAGTTGTAATAAACCATTTGTCTGGTGTGTCAGTAAGCTTTCGCCCTATCCCCAGTTAAGTTTATTCATCTTCCATTAGATATACTATTCATAAAATTCACAAATATTGTGAGCATTCATTTCAAAAGGTTGTGTTATATACGGTTACACCCCCATTTCCCATTAAAAAAACAATGTTAAGTAACGATAtcatttcatgaatattaaaCCATTTTTATGTTAAACCA

Function

NR:

description
natterin-like protein isoform X1

GO:

id name namespace
GO:0009405 pathogenesis biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567134.2 False 1758 mRNA 0.45 3 72216314 72224252
XM_021567133.2 True 1755 mRNA 0.45 3 72216314 72224253

Neighbor

gene id symbol gene type direction distance location
LOC110492679 LOC106592833 coding downstream 8633 72202777 ~ 72207681 (-)
trnat-agu-136 NA coding downstream 181692 72034549 ~ 72034622 (-)
trnah-gug-89 NA coding downstream 182040 72034203 ~ 72034274 (-)
trnat-cgu-54 NA coding downstream 182617 72033624 ~ 72033697 (-)
trnat-cgu-53 NA coding downstream 183542 72032699 ~ 72032772 (-)
LOC110492680 nattl coding upstream 54462 72278715 ~ 72285363 (-)
LOC110492684 NA coding upstream 100392 72324645 ~ 72326840 (-)
kcnc4 kcnc4 coding upstream 242393 72466646 ~ 72533135 (-)
hspa1b LOC106566386 coding upstream 312175 72536428 ~ 72540025 (-)
LOC110492690 LOC106566363 coding upstream 316182 72540435 ~ 72611247 (-)
G1407631 NA non-coding downstream 14844 72200515 ~ 72201470 (-)
G1407646 NA non-coding downstream 32304 72178133 ~ 72184010 (-)
G1407619 NA non-coding downstream 63532 72152533 ~ 72152782 (-)
G1407612 NA non-coding downstream 74290 72131627 ~ 72142024 (-)
G1407603 NA non-coding downstream 100924 72115113 ~ 72115390 (-)
G1407719 NA non-coding upstream 139891 72364144 ~ 72423225 (-)
G1407728 LOC106566388 non-coding upstream 147295 72371548 ~ 72381911 (-)
G1407717 NA non-coding upstream 202545 72426798 ~ 72428838 (-)
G1407755 NA non-coding upstream 211176 72435429 ~ 72437847 (-)
G1407763 NA non-coding upstream 223878 72448131 ~ 72448971 (-)
G1406752 NA other downstream 670469 71501118 ~ 71547366 (-)
G1406760 NA other downstream 672845 71539958 ~ 71543469 (-)
G1406514 NA other downstream 955497 71260322 ~ 71260817 (-)
G1406228 NA other downstream 1474135 70735647 ~ 70742179 (-)
LOC110492660 LOC106566428 other downstream 1995058 70216538 ~ 70221552 (-)
G1407628 NA other upstream 107553 72331806 ~ 72332715 (-)
G1408615 NA other upstream 1006559 73230812 ~ 73232954 (-)
ppdpfb LOC106566296 other upstream 1545603 73769856 ~ 73777432 (-)
rps21 LOC106572905 other upstream 1948620 74172873 ~ 74182639 (-)

Expression


Co-expression Network