LOC110492682 (LOC106592833)


Basic Information

Item Value
gene id LOC110492682
gene name LOC106592833
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 72246162 ~ 72249506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947722.1
GTGCCTCTCCACTCCAGAGACACATATTCCGCTGTTGCGTCTTTGAACTTCACTCAGAGTCTTGACTCTTAAACAACTTTATTGCATATTGAATCAGACCAATCAGTTTTCTTTCATCAAGATCATCTATAGTCATCCTTAACACTGAGGCCTGCATATCATTCTATATATTTAAAAGAAGATACTTTGTTTGGAGAGGTTACTtgacgcacgcacgcgcgcgcacacgcacacaccctcaACATGGCAACCACACTGGATCTAATAGGTGGTCAAGGAGGCAGTCCATTTGAATTCCACGGCATGAACAACGGTGCCACCCTCAAGAAGATCGGAGTGGCGGTGGAAGGCTGGCAGGTGAAAGCTGTGCGGGCGGAGCTTACCGACGGGAAAGTAGCAACTTTTGGAGATGCTAACACTTTCAATGAGTTTGAGTTCAAACTCGGCGAGCGCATCACCAAGCTGTCTCTGTGGGGTAACGGCGCCGGCACACGTCTGGGTGCCATCAAGTTCACGACGAGTGAGAACCGGGAGTTCTTTGAAAAAATGACCAGCTGGGGACTGAAGACTGAGTACACCATAGATGTGGGCTCTGGAATCTGCCTGGGGCTGCAGGGCAGGTATGGCTCAGACATCGACTGCATGGGCTTCCTCTTCATCAACACCATCAAGTCGTCCGTGCTGACCGACATGAATTATCCCACCCTGTCCCTCTTCAAACCCCAGgTGACCCCAGAATATGTGAAATCTCTATCTCACCACAATGACACCTCATTGGTTCAAGAAGAGTCCATTACATACAGCAAGACACTGACCAAGACTTCCTCCTGGTCCGTCAGCAACAAGATAGAGTCCACCTTGAATGTGTCGGTCAAAGCAGGGATCCCTGATCTGGTCGAGGTGACATCAGGGTTCAGCTTGACCGTGGGAGTGGAGCATTCCACCAGCCTGCAGAAGACAGAGACCATAACAGAATCGGATACCATCAATCTGAAGATCCCGCCAGGGAAGACCATGGATGTTGAGATCACAGTGGGGAGAGCAAATATCGACCTCGACTACGAGGCCAAAGTGAAAGTCACCTGCATGAATGGCAGTCAGCTGGTCTTCCCATCCAATGGCGTCTACACTGGTGTGACTTACACTTCAGCGAGGGTATCCACAAAGGAGAGATAATAAGTACAGTGATAGAATTAACTAATTATTTGTGTGCCTTTTCTGTTACTATGATCATCTTTGAGTGATTCTAATTGAACCCAGTTGACTCAGCTCTTTCTGTTATTATGATAAACTTTGAGTGATTCTAATTCAACCCAGTTGACTCAGCTCTTTCTGTTATTATGATAAACTTTGAGTGATTCTAATTCAACCCAGTTGA
>XR_005036619.1
GTGCCTCTCCACTCCAGAGACACATATTCCGCTGTTGCGTCTTTGAACTTCACTCAGAGTCTTGACTCTTAAACAACTTTATTGCATATTGAATCAGACCAATCAGTTTTCTTTCATCAAGATCATCTATAGTCATCCTTAACACTGAGGCCTGCATATCATTCTATATATTTAAAAGAAGATACTTTGTTTGGAGAGGTTACTtgacgcacgcacgcgcgcgcacacgcacacaccctcaACATGGCAACCACACTGGATCTAATAGGTGGTCAAGGAGGCAGTCCATTTGAATTCCACGGCATGAACAACGGTGCCACCCTCAAGAAGATCGGAGTGGCGGTGGAAGGCTGGCAGGTGAAAGCTGTGCGGGCGGAGCTTACCGACGGGAAAGTAGCAACTTTTGGAGATGCTAACACTTTCAATGAGTTTGAGTTCAAACTCGGCGAGCGCATCACCAAGCTGTCTCTGTGGGGTAACGGCGCCGGCACACGTCTGGGTGCCATCAAGTTCACGACGAGTGAGAACCGGGAGTTCTTTGAAAAAATGACCAGCTGGGGACTGAAGACTGAGTACACCATAGATGTGGGCTCTGGAATCTGCCTGGGGCTGCAGGGCAGGTATGGCTCAGACATCGACTGCATGGGCTTCCTCTTCATCAACACCATCAAGTCGTCCGTGCTGACCGACATGAATTATCCCACCCTGTCCCTCTTCAAACCCCAGgTGACCCCAGAATATGTGAAATCTCTATCTCACCACAATGACACCTCATTGGTTCAAGAAGAGTCCATTACATACAGCAAGACACTGACCAAGACTTCCTCCTGGTCCGTCAGCAACAAGATAGAGTCCACCTTGAATGTGTCGGTCAAAGCAGGGATCCCTGATCTGGTCGAGGTGACATCAGGGTTCAGCTTGACCGTGGGAGTGGAGCATTCCACCAGCCTGCAGAAGACAGAGACCATAACAGAATCGGATACCATCAATCTGAAGATCCCGCCAGGGAAGACCATGGATGTTGAGATCACAGTGGGGAGAGCAAATATCGACCTCGACTACGAGGCCAAAGTGAAAGTCACCTGCATGAATGGCAGTCAGCTGGTCTTCCCATCCAATGGCGTCTACACTGGTGTGACTTACACTTCAGCGAGGGTATCCACAAAGGAGAGATAATAAGTACAGTGATAGAATTAACTAATTATTTGTGTGCCTTTTCTGTTACTATGATCATCTTTGAGTGATTCTAATTGAACCCAGTTGACTCAGCTCTTTCTGTTATTATGATAAACTTTGAGTGATTCTAATTCAACCCAGTTGACTcagctctttctttctgtctcagCAGAGGGTTTAACAACAGGTGGGTCATTCCTACAATACGGTGCCTTTGTGTTCCATGACATGTTACCACATAcactagaacacctact

Function

NR:

description
natterin-like protein

GO:

id name namespace
GO:0009405 pathogenesis biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947722.1 False 1378 mRNA 0.47 4 72246162 72249394
XR_005036619.1 True 1433 mRNA 0.48 5 72246162 72249506

Neighbor

gene id symbol gene type direction distance location
LOC110492676 nattl coding upstream 68543 72176120 ~ 72249786 (+)
LOC110492677 LOC106592833 coding upstream 84000 72160747 ~ 72162162 (+)
trnat-agu-147 NA coding upstream 99708 72146381 ~ 72146454 (+)
trnah-gug-107 NA coding upstream 101238 72144853 ~ 72144924 (+)
trnat-agu-146 NA coding upstream 101583 72144506 ~ 72144579 (+)
LOC110492683 nattl coding downstream 13830 72263336 ~ 72264755 (+)
LOC110492916 LOC106592833 coding downstream 82308 72236985 ~ 72333332 (+)
LOC110491175 LOC106566388 coding downstream 121988 72371494 ~ 72419360 (+)
ngrn ngrn coding downstream 392375 72641881 ~ 72646008 (+)
sypl2b LOC106566367 coding downstream 452932 72702438 ~ 72709614 (+)
G1407234 NA non-coding upstream 86253 72159654 ~ 72159909 (+)
G1407229 NA non-coding upstream 93354 72152581 ~ 72152808 (+)
G1407228 NA non-coding upstream 95284 72150668 ~ 72150878 (+)
trnat-agu-144 NA non-coding upstream 99509 72125351 ~ 72146653 (+)
G1407206 NA non-coding downstream 12459 72261965 ~ 72262404 (+)
G1407359 NA non-coding downstream 155606 72405112 ~ 72405550 (+)
G1407323 NA non-coding downstream 177090 72426596 ~ 72429044 (+)
G1407366 NA non-coding downstream 180302 72429808 ~ 72432696 (+)
G1407367 NA non-coding downstream 185732 72435238 ~ 72437011 (+)
G1407190 NA other upstream 142321 72103386 ~ 72103841 (+)
G1406555 NA other upstream 829735 71413557 ~ 71416427 (+)
G1406510 NA other upstream 989185 71255979 ~ 71256977 (+)
G1406509 NA other upstream 994518 71251074 ~ 71251644 (+)
G1406508 NA other upstream 1000139 71245573 ~ 71246023 (+)
G1407509 NA other downstream 516396 72765902 ~ 72769218 (+)
LOC110492598 LOC106566362 other downstream 559224 72808730 ~ 72818165 (+)
LOC110491159 LOC105013496 other downstream 576015 72824995 ~ 72894201 (+)
G1407566 NA other downstream 662477 72911983 ~ 72929719 (+)

Expression


Co-expression Network