LOC118939586


Basic Information

Item Value
gene id LOC118939586
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 72235921 ~ 72263207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036620.1
CTTTGTTTGGAGAGGTGAGTTTCAGCACCAAAAACACCTCATATTCCGACGTGGTATCTATTACATTACATTCATACTCATCATCATAGGGCAGGTTATCATATTCTGATGTAGCATCAATTACATTCatactcatcattattcatgataaTTTGTAATTATAGCAACATCAGAATTAATTTTAAAATGCATAGAGACGTGCTCACTTACACAACAACATGTTTCATTACACATAAGTCACCAAGTTGATCAGGAGAAACAGCAGGAGGTAGAGTGGGAGGTGCTGGGAGTAGGAGAGGGActccatggtgttgatcaggagaAACAGCAGGATGTAGAGTGGGAGGTGCTGGGAGTAGGAGAGGGActccatggtgttgatcaggagaAACAGCAGGAGGTAGAGTGGGGAGGTGCAGGGAGTAGGAGAGGGActccatggtgttgatcaggagaAACAGCAGGAGGTAGAGTGGGGAGGTGCAGGGAGTAGGAGAGGGActccatggtgttgatcaggAAGAAACAGCAggatGTAGAGTGGGAGGTGCTGGGAGTAGGAGAGGGActccatggtgttgatcaggAAGAAACAGCAGGATGTAGAGTGGGGAGGTGCTGGGAGTAGGAGAGGGActccatggtgttgatcaggAAGAAACAGCAGGAGGTAGAGTGGGAGGTGCTGGGAGTAGGAGATGGActccatggtgttgatcaggAAGAAACAGCAGGAGGTAGAGTAGGGAGCTGCTGGGAGTAGGAGATGGACTCCATGGTGTTGAAGAGGGGAGAGGTGCTGGGAGTAGGAGAGGAActccatggtgttgatcaggAAGAAAcagcaggaggtag
>TU1607528
GGATGTAGAGTGGGAGGTGCTGGGAGTAGGAGAGGGActccatggtgttgatcaggAAGAAACAGCAGGAGGTAGAGTGGGGAGGTGCTGGGAGTAGGAGAGGGActccatggtgttgatcaggAAGAAACAGCAGGATGTAGAGTGGGGAGGTGCTGGGAGTAGGAGAGGGActccatggtgttgatcaggAAGAAACAGCAGGAGGTAGAGTGGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036620.1 False 855 mRNA 0.49 3 72246688 72263207
TU1607528 True 218 lncRNA 0.55 2 72235921 72263033

Neighbor

gene id symbol gene type direction distance location
LOC110492676 nattl coding upstream 69069 72176120 ~ 72249786 (+)
LOC110492677 LOC106592833 coding upstream 84526 72160747 ~ 72162162 (+)
trnat-agu-147 NA coding upstream 100234 72146381 ~ 72146454 (+)
trnah-gug-107 NA coding upstream 101764 72144853 ~ 72144924 (+)
trnat-agu-146 NA coding upstream 102109 72144506 ~ 72144579 (+)
LOC110492683 nattl coding downstream 129 72263336 ~ 72264755 (+)
LOC110492916 LOC106592833 coding downstream 68607 72236985 ~ 72333332 (+)
LOC110491175 LOC106566388 coding downstream 108287 72371494 ~ 72419360 (+)
ngrn ngrn coding downstream 378674 72641881 ~ 72646008 (+)
sypl2b LOC106566367 coding downstream 439231 72702438 ~ 72709614 (+)
G1407234 NA non-coding upstream 86779 72159654 ~ 72159909 (+)
G1407229 NA non-coding upstream 93880 72152581 ~ 72152808 (+)
G1407228 NA non-coding upstream 95810 72150668 ~ 72150878 (+)
trnat-agu-144 NA non-coding upstream 100035 72125351 ~ 72146653 (+)
G1407359 NA non-coding downstream 141905 72405112 ~ 72405550 (+)
G1407323 NA non-coding downstream 163389 72426596 ~ 72429044 (+)
G1407366 NA non-coding downstream 166601 72429808 ~ 72432696 (+)
G1407367 NA non-coding downstream 172031 72435238 ~ 72437011 (+)
G1407371 NA non-coding downstream 178426 72441633 ~ 72509161 (+)
G1407190 NA other upstream 142847 72103386 ~ 72103841 (+)
G1406555 NA other upstream 830261 71413557 ~ 71416427 (+)
G1406510 NA other upstream 989711 71255979 ~ 71256977 (+)
G1406509 NA other upstream 995044 71251074 ~ 71251644 (+)
G1406508 NA other upstream 1000665 71245573 ~ 71246023 (+)
G1407509 NA other downstream 502695 72765902 ~ 72769218 (+)
LOC110492598 LOC106566362 other downstream 545523 72808730 ~ 72818165 (+)
LOC110491159 LOC105013496 other downstream 562314 72824995 ~ 72894201 (+)
G1407566 NA other downstream 648776 72911983 ~ 72929719 (+)

Expression


Co-expression Network