LOC110492916 (LOC106592833)


Basic Information

Item Value
gene id LOC110492916
gene name LOC106592833
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 72236985 ~ 72333332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110492916
atgGCAACCAGACTGCAGTTGATCGGTGGTGGAGGAGGCAGTCCATTTGAATTCCACGGCATGAACAACAGTGCCACCCTCAAGAAGATCGGAGTGGCGGTGGAAGGCTGGCAGGTGAAAGCTGTGCGGGCGGAGCTGACCGATGGGCGCCGTTGAGACCTTTGGAAATTTTGAGTTTGAGTTGTACCTCGGCGAGCGCATCACCAAGCTGTCTCTATGGGGTAACGGTGTCGGCACACGTCTGGGTGCCATCAAGTTCACGACGAGTGAGAACCGGGAGTTCTTTGAAAAAATGACCAGCTGGGGACTGAAGACTGAGTACACCATAGATGTGGGGTCTGGAATCTGCCTGGGGCTGCAGGGCAGGTATGGCTCAGACATTGACTGCATGGGCTTCCTCTTCATCAACACCATCAAGTCGTCCGTGCTGACCGACATGGAGTATCCCACCCTGTCCCTCTTCAAACCCCAGGTGAGCTCTTTTATAGATGTGTGTAGACGGCTCAGGAAAACTCTACCGATGCCCTAACATTAAGGGGGCTGTCCACTTTAAAACGTGTAATCCAATATGGGGGTCGACATTCATCAAGCATCTCATTTCtaggacagtcacacacacatacagacacattagtTACTATTGTTGGCTTACTAAAAATCAATTGATCAGTTCCTCACTGATGATTAGTTCTAAAATGGTCTTTGTCTTGTCTGAACAATttgtatctttgtgtgtgtgttgattttaGGTGACTCCAGAATATGTGAAATCCGTGTCCCACCACAATGACACCTCATTGGTTCAAGAAGAGTCCATTACATGCAGCAAGACCCTGACCAAGACTTCCTCCTGGTCTGTCAGCAACAAGATAGAATCCACCTTGAATGTGTCGGTCAAAGTGGGGATCCCAGATCTGGTTAAGGTGTCATCAGGGTTCAGCTTGACCGTGGGAGTGGAGCAATCCACCAGCCACCGAGACCATAACAGAATCGGATACCATCAACCTGAAGATCCCTCCAGGGAAGACCATGAATGTTGATATCACAATGGTGGAAGCAAATTTCGACCTTGACTACAGGGCCATAATGAAAGTCACCTGCATGAATGGCAGTCAGCTGGTCTTCCCATCCACTGGTGTGACTTACACTTCAGTGAGGATATCCACAAAGGAGAGATGATTCCAGTGTATGACATCATGAATAGTGTGCACAGTGATAGAACGTGACACCATTACTGATTATTTGTGTGCCTTCTCTGTTATTATGATCATCTTTGAGTGATTCTAATTGAACCATGTTGACTCAGCTCTTTATTTCTGTCTCAGCAGAGGGTATAACAACAGGTGGGTCATTCCTACAATCCGGTGCCTTTTTTGTCCAATGACATGTTAACACATGTTTTGTATGAATTATTGAACAACATTCACTACAAAATGTTTTCTTATATGGTTAGATGCCCATTTACCATAAAAAACAATGTTATGTAACTAAAATTAATTAAAGTTGTAATAAACCATTT
>TU1607449
GGGAAAGTAGCGACTTTTGGAGATGCGAACACTTTCAATGAGTTTGAGTTCAACCTCGGCGAGCGCATCACCAAGCTGTCTCTATGGGGTAACGGTGTCGGCACACGTCTGGGTGCCATCAAGTTCACGACGAGTGAGAACCGGGAGTTCTTTGAAAAAATGACCAGCTGGGGACTGAAGACTGAGTACACCATAGATGTGGGGTCTGGAATCTGCCTGGGGCTGCAGGGCAGGTATGGCTCAGACATTGACTGCATGGGCTTCCTCTTCATCAACACCATCAAGTCGTCCGTGCTGACCGACATGGAGTATCCCACCCTGTCCCTCTTCAAACCCCAGGTGAGCTCTTTTATAGATGTGTGTAGACGGCTCAGGAAAACTCTACCGATGCCCTAACATTAAGGGGGCTGTCCACTTTAAAACGTGTAATCCAATATGGGGGTCGACATTCATCAAGCATCTCATTTCtaggacagtcacacacacatacagacacattagtTACTATTGTTGGCTTACTAAAAATCAATTGATCAGTTCCTCACTGATGATTAGTTCTAAAATGGTCTTTGTCTTGTCTGAACAATttgtatctttgtgtgtgtgttgattttaGGTGACTCCAGAATATGTGAAATCCGTGTCCCACCACAATGACACCTCATTGGTTCAAGAAGAGTCCATTACATGCAGCAAGACCCTGACCAAGACTTCCTCCTGGTCTGTCAGCAACAAGATAGAATCCACCTTGAATGTGTCGGTCAAAGTGGGGATCCCAGATCTGGTTAAGGTGTCATCAGGGTTCAGCTTGACCGTGGGAGTGGAGCAATCCACCAGCCACCGAGACCATAACAGAATCGGATACCATCAACCTGAAGATCCCTCCAGGGAAGACCATGAATGTTGATATCACAATGGTGGAAGCAAATTTCGACCTTGACTACAGGGCCATAATGA

Function

NR:

description
PREDICTED: natterin-like protein

GO:

id name namespace
GO:0009405 pathogenesis biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110492916 False 1519 mRNA 0.45 1 72331814 72333332
TU1607449 True 957 lncRNA 0.47 2 72236985 72332903

Neighbor

gene id symbol gene type direction distance location
LOC110492683 nattl coding upstream 67059 72263336 ~ 72264755 (+)
LOC118939586 NA coding upstream 68607 72235921 ~ 72263207 (+)
LOC110492682 LOC106592833 coding upstream 82308 72246162 ~ 72249506 (+)
LOC110492676 nattl coding upstream 154195 72176120 ~ 72249786 (+)
LOC110492677 LOC106592833 coding upstream 169652 72160747 ~ 72162162 (+)
LOC110491175 LOC106566388 coding downstream 38162 72371494 ~ 72419360 (+)
ngrn ngrn coding downstream 308549 72641881 ~ 72646008 (+)
sypl2b LOC106566367 coding downstream 369106 72702438 ~ 72709614 (+)
LOC118939587 NA coding downstream 373001 72706333 ~ 72707004 (+)
amigo1 LOC106566368 coding downstream 420751 72754083 ~ 72768074 (+)
G1407209 NA non-coding upstream 4003 72207453 ~ 72327811 (+)
G1407206 NA non-coding upstream 69410 72261965 ~ 72262404 (+)
G1407234 NA non-coding upstream 171905 72159654 ~ 72159909 (+)
G1407359 NA non-coding downstream 71780 72405112 ~ 72405550 (+)
G1407323 NA non-coding downstream 93264 72426596 ~ 72429044 (+)
G1407366 NA non-coding downstream 96476 72429808 ~ 72432696 (+)
G1407367 NA non-coding downstream 101906 72435238 ~ 72437011 (+)
G1407371 NA non-coding downstream 108301 72441633 ~ 72509161 (+)
G1407199 LOC106566391 other upstream 52259 72216313 ~ 72279555 (+)
G1407190 NA other upstream 227973 72103386 ~ 72103841 (+)
G1406555 NA other upstream 915387 71413557 ~ 71416427 (+)
G1406510 NA other upstream 1074837 71255979 ~ 71256977 (+)
G1406509 NA other upstream 1080170 71251074 ~ 71251644 (+)
G1407509 NA other downstream 432570 72765902 ~ 72769218 (+)
LOC110492598 LOC106566362 other downstream 475398 72808730 ~ 72818165 (+)
LOC110491159 LOC105013496 other downstream 492189 72824995 ~ 72894201 (+)
G1407566 NA other downstream 578651 72911983 ~ 72929719 (+)
trnat-agu-147 NA coding upstream 90531 72146381 ~ 72146454 (+)
trnah-gug-107 NA coding upstream 92061 72144853 ~ 72144924 (+)
trnat-agu-146 NA coding upstream 92406 72144506 ~ 72144579 (+)
G1407229 NA non-coding upstream 84177 72152581 ~ 72152808 (+)
G1407228 NA non-coding upstream 86107 72150668 ~ 72150878 (+)
trnat-agu-144 NA non-coding upstream 90332 72125351 ~ 72146653 (+)
G1406508 NA other upstream 990962 71245573 ~ 71246023 (+)

Expression


Co-expression Network