hspa1b (LOC106566386)


Basic Information

Item Value
gene id hspa1b
gene name LOC106566386
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 72536428 ~ 72540025 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947727.1
aaacaacaacaacaacaacaaaattaaCCAAGATGTCTTCAGCAAAGGGAGTATCCATTGGCATTGACCTGGGCACCACCTATTCCTGTGTGGGGGTGTTCCAGCATGGCAAGGTGGAGATCATCGCCAACGACCAGGGAAACAGAACAACGCCCAGCTACGTGGCCTTCACCGACACAGAGAGACTCATTGGAGACGCAGCAAAGAACCAGGTGGCCATGAACCCCACTAACACTGTGTTCGACGCCAAACGCCTGATTGGCAGGAAGTTCGACGACCAGATTGTTAAATCAGACATGAAGCTGTGGCCCTTCAAGGTGATCAGCGACGGTGGAAAGCCCAGAGTCCAGGTGGAGTACAAGGGAGAGACCAAGGCCTTCTACCCCGAAGAGATCTCTTCAATGGTCCTCGTCAAGATGAAGGAGATTGCTGAGGCCTACCTGGGCCAGAAGGTGTCCAATGCAGTCATCACAGTCCCAGCCTACTTCAACGACTCCCAGAGGCAGGCTACTAAAGACGCTGGGGTGATCTCTGGACTGAACGTCCTGAGGATCATCAATGAGCCCACGGCGGCGGCTATCGCCTATGGCCTGGACAAAGGCAAGAGAGGGGAGCGCAATGTTCTCATCTTTGATCTCGGCGGAGGCACCTTTGACGTCTCCATCCTGACCATCGAGGACGGGATATTCGAGGTGAAGGCCACAGCTGGGGACACTCACCTGGGAGGGGAGGACTTTGACAACCGCCTGGTCAACCACTTTGTGGAGGAGTTCAAGAGGAAGAACAAGAAGGACATCAGCCAGAACAAGAGGGCAGTGAGAAGGCTGAGGACAGCCTGTGAGAGGGCCAAGAGAACTCTCTCCTCCAGTTCCCAGGCCAGCGTCGAGATCGACTCCCTCTTCGAAGGCATGGACTTCTACACCTCCATCACCAGGGCTCGGTTTGAAGAACTCAACTCGGAGCTCTTCAGGGGAACCCTGGACCCGGTCGAGAAGGCCCTGAAAGACGCTAAGATGGACAAGGCTCAGGTCCAGGAGATAGTCCTGGTCGGTGGCTCCACTCGAATCCCTAAGATTCAGAAGCTCCTGCAGGACTTCTTTAATGGAAGGGAACTCAACAAGAGCATCAACCCAGATGAAGCGGTGGCTTACGGCGCTGCCGTCCAGGCGGCCATCTTGATGGGCGACACCTCTAAGAATGTCCAGGACCTTCTCCTCCTTGACGTGGCTCCTCTGTCCCTGGGCATCGAGACGGCTGGAGGGGTCATGACCGCCCTGATCAAACGTaacaccaccatccccaccaaGCAGACCCAGATCTTCTCCACCTATGCTGACAACCAGCCAGGTGTGCTCATCCAGGTgtacgagggagagagagccatgaCCAAGGACAATAATTTGCTGGGAAAGTTTGAGCTCACGGGTATCCCTCCCGCTCCTAGAGGAGTTCCCCAAGTCGAGGTGACCTTCGACATCGACGCTAACGGCATCCTGAACGTGTCGGCTGTGGATAAAAGTACAGGCAAGGAGAACAAGATCACCATCACCAACGACAAGGGGCGACTCAGTAAAGAAGACATAGAGAGGATGGTGCAGGACGCAGACAAATACAAAGCTGAGGACGATGCCCAGAGGGAGAAGATAGCAGCCAAGAACGGGTTGGAGTCCTACACGTTTAACATGAAGAGTAGTGTAGAAGATCCAAACCTGGCAGGGAAGATCAATGAGGATGACAAGAAGAAGGTTGTTGAGAAGTGCAACCAAACTATCTCCTGGTTGGAGAACAACCAGATGGCTGAGAAGGAGGAGTTTGAATACCAACAGAAGGAGCTGGAGAGAGTGTGTAACCCAATCGTATCCAAGCTCTACCAGGGGGCGGGAGGGGCTAGTCCAATGGGGAGTTGTGGCAGCCAGGCTGGGGGCGGTGCTAGCTCTCAGGGCCCTACCATTGAAGAGGTGGACTAAATAATCAATCAGTAAATCAATTGCCGATCAATGGATCGATCACTAAAGAGGCCTCATAAGCTAATGGTGCTTCTAATATAGGTACTGTTTGTCAGCTAGCTCAACTTTCATAGCACTATATATGTACATAGATTTGCTGTCACTACAAGTCCACTTTATTTTTTGTGTCAAATCTTCAACCCTAAACTGTTTGCAGAAATTCATTAAATGGTGAATACGTGCATCAGAATTATGAGTGcaatatttatttgttatttatttatttatttgaccacTAAGTGAAATGCCATGCCCAGTTGTTTTTGTATCATTATTCTCACGTACACTCTCTCACAATACAACCACAGTTCAGATAACtgtgccaccgtgcttctacacctgcattgcttgctgtttaggggtttcaggctgggtttctgtacagcactatgagatatcagctgatgtacgaa
>XM_021567143.2
TAACTAATATTAGTTACTGCAGCTGGGAAAGCCGGTGAATATTCTATCTAGAGATTCACGTGTCACAGAAGAAGTGTGATCATTCTAGAAAGCTGTTTTTATGTATATAAGCCATGGATCTCTCTCAGTTGAGGTATATCTTTTTGGAATAACCACACGACTCAAGAGCAAAGACCCGAGCAGGGGTGCGGACACCACTCAGGACTCAAAAACGAGGTCCTTCAATATATCGAAGAGAAGAACCAAAGCTGTCTACCGTTGAactcaaacaacaacaacaacaacaaaattaaCCAAGATGTCTTCAGCAAAGGGAGTATCCATTGGCATTGACCTGGGCACCACCTATTCCTGTGTGGGGGTGTTCCAGCATGGCAAGGTGGAGATCATCGCCAACGACCAGGGAAACAGAACAACGCCCAGCTACGTGGCCTTCACCGACACAGAGAGACTCATTGGAGACGCAGCAAAGAACCAGGTGGCCATGAACCCCACTAACACTGTGTTCGACGCCAAACGCCTGATTGGCAGGAAGTTCGACGACCAGATTGTTAAATCAGACATGAAGCTGTGGCCCTTCAAGGTGATCAGCGACGGTGGAAAGCCCAGAGTCCAGGTGGAGTACAAGGGAGAGACCAAGGCCTTCTACCCCGAAGAGATCTCTTCAATGGTCCTCGTCAAGATGAAGGAGATTGCTGAGGCCTACCTGGGCCAGAAGGTGTCCAATGCAGTCATCACAGTCCCAGCCTACTTCAACGACTCCCAGAGGCAGGCTACTAAAGACGCTGGGGTGATCTCTGGACTGAACGTCCTGAGGATCATCAATGAGCCCACGGCGGCGGCTATCGCCTATGGCCTGGACAAAGGCAAGAGAGGGGAGCGCAATGTTCTCATCTTTGATCTCGGCGGAGGCACCTTTGACGTCTCCATCCTGACCATCGAGGACGGGATATTCGAGGTGAAGGCCACAGCTGGGGACACTCACCTGGGAGGGGAGGACTTTGACAACCGCCTGGTCAACCACTTTGTGGAGGAGTTCAAGAGGAAGAACAAGAAGGACATCAGCCAGAACAAGAGGGCAGTGAGAAGGCTGAGGACAGCCTGTGAGAGGGCCAAGAGAACTCTCTCCTCCAGTTCCCAGGCCAGCGTCGAGATCGACTCCCTCTTCGAAGGCATGGACTTCTACACCTCCATCACCAGGGCTCGGTTTGAAGAACTCAACTCGGAGCTCTTCAGGGGAACCCTGGACCCGGTCGAGAAGGCCCTGAAAGACGCTAAGATGGACAAGGCTCAGGTCCAGGAGATAGTCCTGGTCGGTGGCTCCACTCGAATCCCTAAGATTCAGAAGCTCCTGCAGGACTTCTTTAATGGAAGGGAACTCAACAAGAGCATCAACCCAGATGAAGCGGTGGCTTACGGCGCTGCCGTCCAGGCGGCCATCTTGATGGGCGACACCTCTAAGAATGTCCAGGACCTTCTCCTCCTTGACGTGGCTCCTCTGTCCCTGGGCATCGAGACGGCTGGAGGGGTCATGACCGCCCTGATCAAACGTaacaccaccatccccaccaaGCAGACCCAGATCTTCTCCACCTATGCTGACAACCAGCCAGGTGTGCTCATCCAGGTgtacgagggagagagagccatgaCCAAGGACAATAATTTGCTGGGAAAGTTTGAGCTCACGGGTATCCCTCCCGCTCCTAGAGGAGTTCCCCAAGTCGAGGTGACCTTCGACATCGACGCTAACGGCATCCTGAACGTGTCGGCTGTGGATAAAAGTACAGGCAAGGAGAACAAGATCACCATCACCAACGACAAGGGGCGACTCAGTAAAGAAGACATAGAGAGGATGGTGCAGGACGCAGACAAATACAAAGCTGAGGACGATGCCCAGAGGGAGAAGATAGCAGCCAAGAACGGGTTGGAGTCCTACACGTTTAACATGAAGAGTAGTGTAGAAGATCCAAACCTGGCAGGGAAGATCAATGAGGATGACAAGAAGAAGGTTGTTGAGAAGTGCAACCAAACTATCTCCTGGTTGGAGAACAACCAGATGGCTGAGAAGGAGGAGTTTGAATACCAACAGAAGGAGCTGGAGAGAGTGTGTAACCCAATCGTATCCAAGCTCTACCAGGGGGCGGGAGGGGCTAGTCCAATGGGGAGTTGTGGCAGCCAGGCTGGGGGCGGTGCTAGCTCTCAGGGCCCTACCATTGAAGAGGTGGACTAAATAATCAATCAGTAAATCAATTGCCGATCAATGGATCGATCACTAAAGAGGCCTCATAAGCTAATGGTGCTTCTAATATAGGTACTGTTTGTCAGCTAGCTCAACTTTCATAGCACTATATATGTACATAGATTTGCTGTCACTACAAGTCCACTTTATTTTTTGTGTCAAATCTTCAACCCTAAACTGTTTGCAGAAATTCATTAAATGGTGAATACGTGCATCAGAATTATGAGTGcaatatttatttgttatttatttatttatttgaccacTAAGTGAAATGCCATGCCCAGTTGTTTTTGTATCATTATTCTCACGTACACTCTCTCACAATACAACCACAGTTCAGATAACtgtgccaccgtgcttctacacctgcattgcttgctgtttaggggtttcaggctgggtttctgtacagcactatgagatatcagctgatgtacga

Function

NR:

description
heat shock 70 kDa protein-like

GO: NA

KEGG:

id description
K03283 HSPA1s; heat shock 70kDa protein 1/2/6/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947727.1 False 2419 mRNA 0.51 3 72536428 72539388
XM_021567143.2 True 2684 mRNA 0.50 4 72536429 72540025

Neighbor

gene id symbol gene type direction distance location
kcnc4 kcnc4 coding downstream 3293 72466646 ~ 72533135 (-)
LOC110492684 NA coding downstream 209588 72324645 ~ 72326840 (-)
LOC110492680 nattl coding downstream 251065 72278715 ~ 72285363 (-)
LOC118936314 nattl coding downstream 312175 72216314 ~ 72224253 (-)
LOC110492679 LOC106592833 coding downstream 328747 72202777 ~ 72207681 (-)
LOC110492690 LOC106566363 coding upstream 410 72540435 ~ 72611247 (-)
LOC110492693 LOC105029198 coding upstream 80701 72620726 ~ 72641373 (-)
LOC110492692 LOC106566365 coding upstream 105992 72646017 ~ 72683627 (-)
LOC110491158 LOC106566369 coding upstream 364345 72904370 ~ 72929766 (-)
LOC110492600 LOC106566373 coding upstream 500510 73040535 ~ 73047672 (-)
G1407797 NA non-coding downstream 40345 72494970 ~ 72496083 (-)
G1407763 NA non-coding downstream 87457 72448131 ~ 72448971 (-)
G1407755 NA non-coding downstream 100202 72435429 ~ 72437847 (-)
G1407717 NA non-coding downstream 107590 72426798 ~ 72428838 (-)
G1407719 NA non-coding downstream 113203 72364144 ~ 72423225 (-)
G1407878 LOC106566367 non-coding upstream 165543 72705568 ~ 72707233 (-)
G1407877 NA non-coding upstream 169320 72709345 ~ 72710717 (-)
G1407884 NA non-coding upstream 204723 72744748 ~ 72745103 (-)
G1407885 NA non-coding upstream 207519 72747544 ~ 72747761 (-)
G1407906 NA non-coding upstream 233248 72773273 ~ 72773506 (-)
G1407628 NA other downstream 203713 72331806 ~ 72332715 (-)
G1406752 NA other downstream 990583 71501118 ~ 71547366 (-)
G1406760 NA other downstream 992959 71539958 ~ 71543469 (-)
G1406514 NA other downstream 1275611 71260322 ~ 71260817 (-)
G1408615 NA other upstream 690787 73230812 ~ 73232954 (-)
ppdpfb LOC106566296 other upstream 1229831 73769856 ~ 73777432 (-)
rps21 LOC106572905 other upstream 1632848 74172873 ~ 74182639 (-)
G1409044 NA other upstream 1655500 74195525 ~ 74195951 (-)
G1409407 NA other upstream 2196408 74736433 ~ 74739189 (-)

Expression


Co-expression Network