ngrn (ngrn)


Basic Information

Item Value
gene id ngrn
gene name ngrn
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 72641881 ~ 72646008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945800.1
ATTTTCGACCAAGTAGTGACTGAAATGTATCGGGGGTTTTCAACACCACATGCCAGTAGGTGGCAGTATGTGGAAATATAGGTTGTATGCCAGACTGTTTGCGGAAAGGCTGCATCGTTTCCACGAGACAAGCAGGTCTAGACTGAAATGTAGCTAAAGAAAGCAGGAGAATCTTATTTGGTAGTGTCTGGTGACCAGTGGTGAGCCTTCAGAATAGCCATGATGTCTTTCAGGATTGTCTCCTTGATAGCCTCAAGGCTTGGCAAACTGTCAGTGATGCCCACAAGGAGCTGTAGTCGACACCTCTGCAGCGATGCCAGCAAGGCCTGGATGGATCAGAGGCAGACACACAGGACCTCGGCCCACAGacacagagggaaggaggagaggtctGAAGATCCAGATCCAGATGTGGACGATGTAGACGACAAGGTCCAGGCTGTGTTCAGtgaagagaggaggagacagaggacgGTGAAGTACCATATAGTTAAGAGACAGCTGACCGAGTCTGGAGCTCCAGAGAGGAGGCTGAGCTGGGACGCCATGGAACAGATCAGGTATCTGAAGCAGGAGCTACCAGAGGAATGGACCATTGACCGTCTGGCAGAGGGATTCTCGGTCCATCGTGACGTCATCCTACGAGTCCTGAGGAGCAAGTTCGCCCCCACCCCAGAGAGGAAAGCTAAACAGGACACCAGCGTGTGGGCCAGGCTGAGACAGCAGGCCTTACCTGGGGGTGGAGCAGGGGGACAGGATAGGCAGGTGGCCCTACCTGGAGGGagacagggcaggcagaaagCCCTACCTGGGGGTGGAGCAGGGGGACAGGGCGGGCAGAAAGCCCTACCTGGGGGTGGAGCAGGGGGACAGGGCGGGCAGAAAGCCCTACCTGGGGGTGGAGCAGGGGGACAGAGCAGGCAGAAAGCCCTACCTGGGGGTGGAGCAGGGGGACAGGAGAGGCAGGTGGCCCTACTTGGGGGTGGAGCAGGGGAACAGGGCAGGCAGAAAGCCCTACCTGGGGGTGGAGCAGGGGGACAGAAAGCCCTACCTGGGGGTGGAGCAGGGGGACAGAAAGCCCTACCTGGGGGTGGAGCAGGGGGACAGGATAGGCAGGTGGCCCTACCTGGTGGTGGAGAGGCAGGGAGGCCGGGCAGAACACAGCTGCCTGCCTCTGGACATAGAAGTAGGAAACCAGCCATGCTGCCCACAGGAAGTGACACTGGTGCCCTGGTCACCCTGGCTAGCCACAGTAGCCAGAGGCTGATAGCCAGGGACTTGGAGGATGACCCTGGCCCAAGAGCCATGATGACTACTGCAAATTATCCTGCTGCTCCTCTCACCTCACTACCCACCCAGCTCTCATCCTCACCAACCCTGCACAGCAGACACACCTCAGGACAAGATGACTCGAGAGGggagtgggaggaagaggaaaATGTGTCGGAGAAAGACgaccaggaggagagatgggatggAAGGGTGTTTTCAGAGGAAGAACTGGAGGAACTAATGCTGACGTCAAAGCCTTCGCCAGTGGTACCGAATGGGAGAGAGTTCTTTGACAGTGAAGGAAACTTCCTGTACAGAATCTGAGCTggcaaaatggcaccctattccctacatagtgcactacttttgaccagggctaatggcaccctattccctatattagtgcactactttagaccaggacctgaTGGGTGCCATTTTAGAAGTAGCCTGAGATGTTGTTAATGTGTTGGTTTCCTAAATACAGTCAAATGCAATAGACTTCTGTTGGAAGATGCCGGAGACTCTGATTATGCCGCAAACCAATAAAGCACCATTTCAAATGTATGGGTTAGTCACAAGTTTTGATTCTATACTTTGTTTTCTTGAATGTTGCACATATTGACATTGgaatgaaatgtaattttaagTTCAGAA
>TU1607753
GGAAAGGCTGCATCGTTTCCACGAGACAAGCAGGTCTAGACTGAAATGTAGCTAAAGAAAGCAGGAGAATCTTATTTGGTAGTGTCTGGTGACCAGTGGTGAGCCTTCAGAATAGCCATGATGTCTTTCAGGATTGTCTCCTTGATAGCCTCAAGGCTTGGCAAACTGTCAGTGATGCCCACAAGGAGCTGTAGTCGACACCTCTGCAGCGATGCCAGCAAGGCCTGGATGGATCAGAGGCAGACACACAGGACCTCGGCCCACAGacacagagggaaggaggagaggtctGAAGATCCAGATCCAGATGTGGACGATGTAGACGACAAGGTCCAGGCTGTGTTCAGtgaagagaggaggagacagaggacgGTGAAGTACCATATAGTTAAGAGACAGCTGACCGAGTCTGGAGCTCCAGAGAGGAGGCTGAGCTGGGACGCCATGGAACAGATCAGGTATCTGAAGCAGGAGCTACCAGAGGAATGGACCATTGACCGTCTGGCAGAGGGATTCTCGGTCCATCGTGACGTCATCCTACGAGTCCTGAGGAGCAAGTTCGCCCCCACCCCAGAGAGGAAAGCTAAACAGGACACCAGCGTGTGGGCCAGGCTGAGACAGCAGGCCTTACCTGGGGGTGGAGCAGGGGGACAGGATAGGCAGGTGGCCCTACCTGGAGGGag

Function

symbol description
ngrn Predicted to be located in mitochondrial membrane. Predicted to be active in nucleus. Orthologous to human NGRN (neugrin, neurite outgrowth associated).

NR:

description
neugrin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945800.1 False 1929 mRNA 0.54 4 72641881 72646008
TU1607753 True 683 TUCP 0.55 4 72641983 72644864

Neighbor

gene id symbol gene type direction distance location
LOC110491175 LOC106566388 coding upstream 222521 72371494 ~ 72419360 (+)
LOC110492916 LOC106592833 coding upstream 308549 72236985 ~ 72333332 (+)
LOC110492683 nattl coding upstream 377126 72263336 ~ 72264755 (+)
LOC118939586 NA coding upstream 378674 72235921 ~ 72263207 (+)
LOC110492682 LOC106592833 coding upstream 392375 72246162 ~ 72249506 (+)
sypl2b LOC106566367 coding downstream 56430 72702438 ~ 72709614 (+)
LOC118939587 NA coding downstream 60325 72706333 ~ 72707004 (+)
amigo1 LOC106566368 coding downstream 108075 72754083 ~ 72768074 (+)
LOC118939588 NA coding downstream 120534 72766542 ~ 72769227 (+)
LOC110492598 LOC106566362 coding downstream 168339 72808730 ~ 72818165 (+)
G1407430 NA non-coding upstream 22247 72618638 ~ 72619634 (+)
G1407433 NA non-coding upstream 99090 72540436 ~ 72542791 (+)
G1407371 NA non-coding upstream 132720 72441633 ~ 72509161 (+)
G1407367 NA non-coding upstream 204870 72435238 ~ 72437011 (+)
G1407366 NA non-coding upstream 209185 72429808 ~ 72432696 (+)
G1407472 NA non-coding downstream 11002 72657010 ~ 72657362 (+)
G1407485 LOC106566365 non-coding downstream 25263 72671271 ~ 72683597 (+)
G1407488 NA non-coding downstream 31980 72677988 ~ 72678350 (+)
G1407493 NA non-coding downstream 42652 72688660 ~ 72693547 (+)
G1407500 NA non-coding downstream 65822 72711830 ~ 72712090 (+)
G1407199 LOC106566391 other upstream 362326 72216313 ~ 72279555 (+)
G1407190 NA other upstream 538040 72103386 ~ 72103841 (+)
G1406555 NA other upstream 1225454 71413557 ~ 71416427 (+)
G1406510 NA other upstream 1384904 71255979 ~ 71256977 (+)
G1406509 NA other upstream 1390237 71251074 ~ 71251644 (+)
G1407509 NA other downstream 119894 72765902 ~ 72769218 (+)
LOC110491159 LOC105013496 other downstream 179513 72824995 ~ 72894201 (+)
G1407566 NA other downstream 265975 72911983 ~ 72929719 (+)
G1408176 NA other downstream 779739 73425747 ~ 73426266 (+)

Expression


Co-expression Network