LOC110492692 (LOC106566365)


Basic Information

Item Value
gene id LOC110492692
gene name LOC106566365
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 72646017 ~ 72683627 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947731.1
GGCTATCTGCAAAGGTGTGTAATATCCATCCCATAGACACAATTTCATGCACCGTTACATTGTATAATTTTTGGACAAGGAGTTGCACGGTGGACAATTGGACCTAATGTATCTCGGCACATTATTGCGTCTGATTTGTTGTTAGCTGGGGACTTCCGACATTTTTTCCGCGCATCGGGACGTAAAACTAAGCGCTCTGGAGACTGGAGCGCACCGCCTCAAATAGTCTATGACCCATGCAGAGCATACAAAGCCCGAAGTAGGTTACCACTCGCTGTCAGGACTACTGTTTGTGTTGATGTCATCGGCGGCCGTGTTCGAACCGGAGCGACCCACGATTTATAGTCAGGATTACtagaataacaaaaatatatcGTACAATAATAGTCGTGTTTTTGGCCAACAGTGAATATGGGAGTTCTGGCGCACTGTGTTATTCTTTTTATATTCCAGCATTTGACGTCATCTTATGATTTTAAAGAAGGACAATATAACAGCGGTCAGTATGAATTTGTGAAAGATCCCAGTTTGAATATCGAAAAGAGATCACCAGATTTAGATCCGTTTGATTCTGAATCATCCGACCACATTAGGAGCAGAAGAAGTGCGGATCAAGGAGACTGTGACCGTCTCCAGGGATTCGACACCAAGTTGACTAACAACACCCAAACCtaTTCCTTCAATGACCTGAGTGGGTCCGTGTCACTGGCCTGGGTTGGAGACGCCACTGGGGTCATCCTGGCTCTGACAACATTCCAGGTGCCGTTCTTCATGTTGCGATTCGGTCAGTCTAAACTCTATCGAAGTGAGAACTACGGGAAGTCGTTCCAGGACGTCACAAACCTCATCAACAACACTTTCATCCGGACAGAGTTCGGCATCGCCATCGGACCAGAGAACTCTGGGAAGGTGATCCTGACAGGTGATGTGTCTGGCAGCCTGGGCTCTCGTATCTTTATCTCCAGAGACTTTGGGAACAGCTTTGAGCAGCAGGACCTTCCCTTCAACCCCCTGATGCAGATCATATACAACCCCATAGATGCCAACGTTCTCCTGGTCATCAGCAACACTAATGAACTCTGGCTGTCTGAGGACTTTGGGGAGAAGTGGAGGAAGATCCACGACATGGTGTGTCTGGCCAAATGGGGGATGGACAGTAACCTATTCTTTACCACCAACCTCAATGGATCCTGCAatgaaAGGGGGATGCTAGACTTGAGAAAGACGGTAGACTACGGGAAGACCATCAAGACTGTTGCCATTAAAATCTTCTCTTTCGGCCTGGGGGGAAAGTTCCTCTTTGCTTCTGTTATGACTGGAACTGGCACTCTGAGGATGATCCATGTGTCGACTAACCAGGGGGAGGATTGGAACATGGCTCAGCTGCCTCCGGTTGGCCACGAGGAGTTCTATTCTATCTTGTCAGCCAATGACGACATGGTGTTCATGCACGTGGATGAACCAGGAGACACAGGCTATGGCAGCATCTACGTGTCAGACGACAGGGGTACCGTGTACTCTAAGTCTCTGGAGCGTCACCTCTACACCACCACTGGGGGAGACACTGACTTCACCAACGTTACCTCTCTACGAGGGGTCTTCATCACCAGTATACTGGCAGAGGACGGCTCGGTGCAGTCCGTGGTGTCCTTCGACCAGGGAGGGGAATGGGTGCCCCTGCAGAAACCTGCCAACACCAAGTGTGACTCCACAGCCAAAGACCCCGACAAGTGCAGTCTCCACATCCACGCAGCTTACAGCACGGCTATGAAGCTGAACGTCCCCATGCTGCCTCTCAGTGAACCAAACGCTGTAGGACTCATCATGGCTCACGGGAGTGTGGGCGATGCCATCTCTGTGATGAAGCCTGACGTATTCGTGTCAGATGATGGAGGTTACACCTGGCTACAGGCCCTGGAGGGACCTCACCACTATGCCATCCTGGACTCTGGTGGACTCCTGGTGGCCGTGGAGCACTCTGCTCAGCCCATCAAAGACATCAAGTTTTCCACAGACGAGGGCCAGTGCTGGCACGTTCACCAGTTCACTAGCGATCCCATCCACTTCACAGGGCTAGCGTCGGAGCCGGGGGCGAGGTCTATGAACGTCAGTGTCTGGGGCTACAGAGACTCTCTGCTCAGTCAGTACTGGGTATCAGTCACCATCGACTTCAGAGAGCTGCTCACTAGAGACTGTGAGGACCAAGACTACGTGCAGTGGCTGGCGCACTCTGATGACATCAGCGACCCTAACGACGGCTGTATGTTGGGTTACAAGGAGAAGTTCCTGCGTCTGAGGAAGGCCTCTGTCTGCTTGAACGGACGGGACTATGAGGTCAACAAGCAACCCGCCCCTTGTCCCTGCACCCTGGATGACTTTCTGTGTGACTTTGGGTACTATCGTAAAGAGAACAGCTCCGAGTGTGTGGAGCAGCCTGACCTGAAGGGCCACGTTCTGGAGTTCTGTCTGCAAGGCAAGAAGGAGCTGCTGCAGACCAGAGGCTATAGGAAGATCCCTGGGGATAAGTGTGAGGGAGGAACACAGCCGGAGAGAAAAGAGATAGACCTCAGTAAGAGGTGTGTCAATGACCTACTGGGACCTCAGGAACTACTGACGGACGGCCATCTGTCCAGCTCAACGCCCATCGTAGTGACAGTTCTGATCATTATCCTGCTCAGTGTCGTGGCCGGGTTCCTCTTTGTCAAGAAGTACGTCTGTGGTGGAAGGTTCCTGGTACACAGGTACTCTGTCCTACAGCAGCATGCTGAGGCCCAGGGAGACGGAGTAGACGAGCCATTAGACAGCAACCACACTCGGGCTAGCAACAAGACCGGCTTACACGATTCAGACGAGgaTCTTCTGGAGTAACAGGTGGCATTTCCAGCTACCAGGAGGAAcccctagcctcctgtctctcctttacAACCTAGAAGCTCCTGCAGCTACCGGGGGAAtctagtctcctgtctgtccttaGGCTCACTGCTCTATATTGAAGAACAAGTTTGTCCTATGTGTACACCGAGGCTCGCTGCTGCTCTCTTCTTCGCTTCCTGTTacttcctccttctcccctccaccATGACCCTTTAACTCTTAACCCCTGACCTTACATCGCCTGGTGGAGAGTCCTTCTAACGCAGCTCTCATCAGTGAGGTATCCAATGAGGCTTTCTGTTCTGAGTGAGAAACGCATACAGAGTTCAGCAGGAGAGCAAAGGGGGCCAGTAGTAGTGTTGTTGTGGTTGATTTTAGAATGTAATCTCCCAAGTTCCTTTGGGAACAATTGAGTGATGGAATGTGGTGGTTCTGGACTACTGGTGAACATTTAAATAATGGACCTCTGGAACTGCTGTGTAGAAGCTGTTTTTAATCATCATCAGCCATCTTCTCTTAGCTTTACGTTGTCTTTTTTTTTCAACCAAGTGAACATAAACAACATTACGGGTTATAAACGCTTGAGACTGGGGCTCTTGGGAATATTACGTATACGCTTCTAATGAAGACTTTTCCtgtttccccccctcccccctgcacTGTACATAAAGAGCTTTCCTTTTTTCATTGATGTGACAGGAGTCGGGGACATGGTACATGGGTTGCTGTTGGGTACTGTGGCTTGGGAAAAATGATTTGTAAGTATTTTGCCTAACTAATAAGATGCAAGTGGAAATATTTATAAGCATTTAAAGTTGGATAGCAATAACATGTTTTAGATCCACTGTATCAACACACTAAGCTTTCATAGCAGGAGTGAACGTCCCTCTAAACTAGACTGAACTAAAGCGACGTATCCTAACCTGAGAAATGTGTACCTGACTCAAACTTTCACCGCCTAAATCATGCATTTGATTTCAATGGGGTAATACAAATGTGTTGCGTGCATGTATTTCAAATTATAATTTGACTGTATTGGAACAAtgtcctttttttttttgtatttgaaAACTGTCTGTTTTAGTTAGTCAGAGGGAGAAAATCTATTGGCCTTACGCCTCTTCATTTCTCAATAAAAAAAATCTTACTTGTGTTTTAATATGTTAAGGTAATCCTACACCAGTGAAAGTAGATCTAAAAGTGAAGAAAGAACAGTAGGAATCCATCACTGGACTACACAATGAGTTagcgctaacacacacacacacacacaaacatcgaGGCTGCTGGTTTATATTTGGCTGCTACTGTGTTTGTGCCCAGGTGTTGCATTGTGGGCAGAGCATGTTTGAGCAGTAGATAGGAGCTGATAAGATGGAGAGGGCACCAACGTAAACACAGGAACTAAAAGCACATTTGTAAATGTAGTACATAGATCTGAACATTATTGATGAAGCAGTTTGCTAGAAGAAGTGGGTTTTTATAACAATGTTGTATGGATGTGTAGCAGTTTAACACTGGCGTGCCTGTTTTCAGTGTGTGTAGAACCGACCTCTATGTACTGTAGCTCATATGTGAATATGAGATGAGCTAATTCTACTGAATCACATATTTTATTACGGTTTAACTAGCTGAGAAGGTCATTGACTTTAGTTTCACAGAGACAGGATCATTCTAGCTTCGGAAGCCCATTTGGGGGTAATGTCTGTGTAGTATGGGGGGTTGGGTCTGTGCCTTCCCAATGAGTGGCAAGTGTATGTACTGTCTATAATAGATTCAaagtgtgcatcccaaatagcaccttgttccctatataggggactacttttgaccagggcccataggatgcACCCTAGATATCAGATGTCCGTGTAACCACAGTTGCATTCACTTTGTCATTGACACCCCGTAGATTGCACTTACTGTAATTATGTGAATAAGGATTTCACCTCAAATGAAACTCCCTTCAATACCGACTACCCTTCTGTTCAGTACAACTGTTCTCTGAATACTCTCCCAAACTATAAGGCAATGGGAACATACAACTAATTTGATTCCCTTGTCATGTAATACAACTTGATTTGTCCACTGTGAAAACAGACAAATGCAATGTTTCATCTAATTTATAATGCAGCCTATACTTGGGTGTTCGGTTTGTACAAAAACATCTCTGTACTTGCACAGGactaaaataaatgttgattggCATTAGAGGCAACACCTGTACTGTAGTTAACACTGGGAAGACCCTTGTTCTGAATGATTCATACCTATTTAATCATGCTGGTTTTATGTCTTTGATTTGAGAGGTGAGACTttttttttcttacatttttaaaaatggctGTATAAAGAAATGATCAATTGTTGAATCTGGGTATCGGCGGTGTCTCTTGTTCTGTATATTTGAGATAATTTTGCTTTGGGTTGACGACCAATAAATTAACTTGTCCCTTTGAAA

Function

NR:

description
sortilin-like

GO: NA

KEGG:

id description
K12388 SORT1; sortilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947731.1 True 5338 mRNA 0.46 19 72646017 72683627

Neighbor

gene id symbol gene type direction distance location
LOC110492693 LOC105029198 coding downstream 4644 72620726 ~ 72641373 (-)
LOC110492690 LOC106566363 coding downstream 34770 72540435 ~ 72611247 (-)
hspa1b LOC106566386 coding downstream 105992 72536428 ~ 72540025 (-)
kcnc4 kcnc4 coding downstream 112882 72466646 ~ 72533135 (-)
LOC110492684 NA coding downstream 319177 72324645 ~ 72326840 (-)
LOC110491158 LOC106566369 coding upstream 220743 72904370 ~ 72929766 (-)
LOC110492600 LOC106566373 coding upstream 356908 73040535 ~ 73047672 (-)
si:ch211-150o23.3 LOC106566377 coding upstream 408794 73092421 ~ 73100266 (-)
LOC110491162 LOC106566379 coding upstream 431796 73115423 ~ 73144288 (-)
LOC110492609 LOC106566381 coding upstream 463669 73147296 ~ 73167393 (-)
G1407797 NA non-coding downstream 149934 72494970 ~ 72496083 (-)
G1407763 NA non-coding downstream 197046 72448131 ~ 72448971 (-)
G1407755 NA non-coding downstream 209791 72435429 ~ 72437847 (-)
G1407717 NA non-coding downstream 217179 72426798 ~ 72428838 (-)
G1407728 LOC106566388 non-coding downstream 264106 72371548 ~ 72381911 (-)
G1407878 LOC106566367 non-coding upstream 21941 72705568 ~ 72707233 (-)
G1407877 NA non-coding upstream 25718 72709345 ~ 72710717 (-)
G1407884 NA non-coding upstream 61121 72744748 ~ 72745103 (-)
G1407885 NA non-coding upstream 63917 72747544 ~ 72747761 (-)
G1407906 NA non-coding upstream 89646 72773273 ~ 72773506 (-)
G1407628 NA other downstream 313302 72331806 ~ 72332715 (-)
G1406752 NA other downstream 1100172 71501118 ~ 71547366 (-)
G1406760 NA other downstream 1102548 71539958 ~ 71543469 (-)
G1406514 NA other downstream 1385200 71260322 ~ 71260817 (-)
G1408615 NA other upstream 547185 73230812 ~ 73232954 (-)
ppdpfb LOC106566296 other upstream 1086229 73769856 ~ 73777432 (-)
rps21 LOC106572905 other upstream 1489246 74172873 ~ 74182639 (-)
G1409044 NA other upstream 1511898 74195525 ~ 74195951 (-)
G1409407 NA other upstream 2052806 74736433 ~ 74739189 (-)

Expression


Co-expression Network