Gene
RNA
| Item | Value |
|---|---|
| gene id | sypl2b |
| gene name | LOC106566367 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 72702438 ~ 72709614 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| synaptophysin-like protein 1 isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0006810 | transport | biological_process |
| GO:0008021 | synaptic vesicle | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005215 | transporter activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021567151.2 | True | 1036 | mRNA | 0.51 | 6 | 72702438 | 72709614 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ngrn | ngrn | coding | upstream | 56430 | 72641881 ~ 72646008 (+) |
| LOC110491175 | LOC106566388 | coding | upstream | 283078 | 72371494 ~ 72419360 (+) |
| LOC110492916 | LOC106592833 | coding | upstream | 369106 | 72236985 ~ 72333332 (+) |
| LOC110492683 | nattl | coding | upstream | 437683 | 72263336 ~ 72264755 (+) |
| LOC118939586 | NA | coding | upstream | 439231 | 72235921 ~ 72263207 (+) |
| amigo1 | LOC106566368 | coding | downstream | 44469 | 72754083 ~ 72768074 (+) |
| LOC118939588 | NA | coding | downstream | 56928 | 72766542 ~ 72769227 (+) |
| LOC110492598 | LOC106566362 | coding | downstream | 104733 | 72808730 ~ 72818165 (+) |
| LOC110491159 | LOC105013496 | coding | downstream | 115381 | 72824995 ~ 72894201 (+) |
| LOC110491160 | LOC103367831 | coding | downstream | 257513 | 72967127 ~ 73019850 (+) |
| G1407453 | NA | non-coding | upstream | 849 | 72597357 ~ 72701589 (+) |
| G1407493 | NA | non-coding | upstream | 8891 | 72688660 ~ 72693547 (+) |
| G1407485 | LOC106566365 | non-coding | upstream | 18841 | 72671271 ~ 72683597 (+) |
| G1407488 | NA | non-coding | upstream | 24088 | 72677988 ~ 72678350 (+) |
| G1407472 | NA | non-coding | upstream | 45076 | 72657010 ~ 72657362 (+) |
| G1407500 | NA | non-coding | downstream | 2216 | 72711830 ~ 72712090 (+) |
| G1407501 | NA | non-coding | downstream | 2834 | 72712448 ~ 72712702 (+) |
| G1407502 | NA | non-coding | downstream | 7164 | 72716778 ~ 72716979 (+) |
| G1407503 | NA | non-coding | downstream | 31609 | 72741223 ~ 72741727 (+) |
| G1407505 | NA | non-coding | downstream | 41255 | 72750869 ~ 72751192 (+) |
| G1407199 | LOC106566391 | other | upstream | 422883 | 72216313 ~ 72279555 (+) |
| G1407190 | NA | other | upstream | 598597 | 72103386 ~ 72103841 (+) |
| G1406555 | NA | other | upstream | 1286011 | 71413557 ~ 71416427 (+) |
| G1406510 | NA | other | upstream | 1445461 | 71255979 ~ 71256977 (+) |
| G1407509 | NA | other | downstream | 56288 | 72765902 ~ 72769218 (+) |
| G1407566 | NA | other | downstream | 202369 | 72911983 ~ 72929719 (+) |
| G1408176 | NA | other | downstream | 716133 | 73425747 ~ 73426266 (+) |
