amigo1 (LOC106566368)


Basic Information

Item Value
gene id amigo1
gene name LOC106566368
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 72754083 ~ 72768074 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947742.1
GAGTATTATGAATAAGAAAAAAACACGAACAATTTATTCTGGCAAGACAAGACTGCTCATGCGCTCCCATGATTCACCACCTCAGCTCGCAGAGATGCTGCTGACAATGCGACTCATGAAGAGAAAACGCACTGGTTTGCTGCAGAAGACGTAAGGAATCGAAGGCCGTCGCTTGGCTGACCAGACCACTTGTCCTCAGGAACATAATACATCATCAGAATACCTGGCGTTGAATGTATCTCTGTCATTAATTCAGGTTGGGTGAGTGCCACCGGTCCAACAAGGACATGTGTTCTTACATTTCTACATAATCTTATCCTTGCGTAATTTTATACCGAGTTTTGGATGCGGCGCGGAGCAGTGTGTTGTCAGGATCTGGGAGCAAGGAAGGATTTCTCCAGCGCTCTCTTCTTTTCGCCCTGCATCCCACTTCTTGTCTTTACATTGGATAGACTATTACTGTAAGGGACTAAAACGAGGTGCAAATTATAAACAGACGTGTCCGATTTGGTAGCGGATGGATTTAATTTCAGAAAATGGCTTAATCTGATCTGACGTGAAGACCTCAATTAAGCGATGCCAGGGATTCCGCCAGCTGCTGCTCCATGCTGTGTAGGAAGAGAACCATAATACAGGAAGTTCTGCTCCTtaaataacaacaacacaccaaCAACTAGCATGTTGCCTCCACACAGAGCAGACGCCCTGCCTgagccctctccctctgcctctgcctctgcctcggcctctccctctccctctccctctccatctgcctctgcctctgcctctccctctccctctccctctcccagcctgaGGAGGGTCCAGGTTCAATGGGCCTTGTACCTCTCCCTGGCCCTCCTCTGGTACCCGTCTGGGGCAGTAGCCTCAACCCTCAACTGCCACAAGACCTGCATCTGTGCCAGTAATATCGTGAGCTGTTCCAAGATGAACCTGACCACAGTGCCCACTGGCCTGCCTCTCTATACGGCCGTCCTGGACCTCAGCTACAACGACGTCTCCCGGCTGAGGGCTGAGTGGACCACGGTGAAACTCACCAAACTCCACAACCTCCTACTCAGTCACAACGGccttcacttcctctcctccgAGGCCTTTGTCTACGTCAAACACCTGCGCTACCTGGACCTGTCCTCCAACGACCTGCGACAGCTGGACGAGTTCATCTTCGAACCGTTGGGGCAgctggagGTGCTGTTGCTCTACAACAACCGTATATCTCAGATTGACCGCTCAGCCTTCCAGGGTCTCCACAGCCTGCAGAAACTCTACCTGTCCCAGAACATGATCTCACGCTTCCCCCTGGAACTGGTCAAGGACAAGACCCGCCTGGAGAAACTCAGCCTGATGGACATCTCATCCAACAGGATCAAGGTTCCACCCATTGAGGAGCTGCAGGTGCTGCCTGCCTGGATAAAGAACGGCCTCTACTTCCACAACAACCCTCTGATCTGTGACTGTAGCCTATATAGTCTCCTGGCCCACTGGCACATCCGCCGGCTCAACTCAGCCCTGGACTTTAAAGATGAGTACAGCTGCTATCTCCCCGGGTCCCAGAAAAGCAGGGTGGGGGTCTTCGACCTCAACAGAGACTACATGAACTGTAGTACGTTCTACGAGGCGGACGAGGAAGCTTGGCTGGAACAGACGCTGATCTTGCGCTGTGATACTAAACACAGAGATCTGTCTAAGACCTGGGTGATGCCTGGCGATGTAGTGGTGACGGAAGGGCTTAATCAGACAGCCAAGGTGCTTCCTGACGGTAGTCTCCAGATCGGTCCGGTGAAGTCGGAGGACTCGGGGACGTACACATGCTACGCTGTGAGCGAAGCCCTCAACGAGACGCTCTACGTGCTGCTCAAGGTGCATAACTTCACGGAGAACGGCAACGGCGAAGCCCTGAACACGGCATACACCACCCTGGTGGGCTGCCTGACCAGCGTGGTCCTAGTGCTCATCTACCTGTACCTGACCCCCTGCCGATGCTTCTGCTGCCCCAAGAAGAACCACGAGGACTCCATCCACTCCTCCATGCTCAGCGCCACACCCAGCCATGAGGACCTGATCAACAACACTGACCCAAGGCATGTGGCCTTCATCGACCCCAAGGAGCTGGGACAGGGGCTGAACGGGAAGGTGAACCCCAACGATGGGGAGGGGgaccagggagagatggatgaggagggagggttactggggaagggaaggaggaagaagTCTGTGGCTGAGTCTATTAGTTCTGTCTTCTCTGACACCCCCATAGTGGTCTGAGATGGTACGGACCGTCGATATGGATGTACGCCGTGACGCGATTGGATGGATCAGGGATGTACGTGGTGTGATTGGATGAAACTGTGACTACTTCCTTGGACAGAAAGCCAATCACAGTTCACTAAACCAACCAATCAGAAGCTTCAGGGGAGTGTCAACACATTGCCTTGGTATTAACAAGGACAACTGACAATAAACAGGACCTTTCTCCAGCATTTGATCTGTAGCACTTAAAATATACATACTGTGAAAGCCTGACAGAGgagtcccactgggcacacactggttgaatccacGTTGTTTAcgcgtcatttcaatgaaattactttGAACCAATGTGCACTAGACGTGgaattgacgtctgtgctcaGTGGAGTGTAAGAGGACACTAATTCCTTCCTGTGGCACAGTAACGGTGGATATCATGTTTGGACGGTAGCAGTACTCAGGAAGACATTGATTGGTGGAGGACCCGAAAATATGAGATTGTGAGCCATTTTAAACTTtgagatgaaaaaaaaaaagggaGATGAATTAATTTTGGAAAATAACATAGTtcgtacatatatatatatatatatatagtcaagTCATGAGCATGAACCTTGTAGACTGACTCATATGTCTATTTAATAATAGGAGTAGACTAGCGTGAGTCTTCTGTAGACTTTAGTACATACAGAACGTACATACGGTAGCtatacacatagaaatagaatgactttATATTACTTCCTGGCATGGGTACATTCATTTTGGCCACCGGGCCACCCATCACAGAACTGACTTGGATGGGAATGTCTGTTCtaataattatatttctatgcatatacccctccaccacccacagacagacagacaggccagagTTGGCCAAATACAACAACATGGTAACCAGATTCAGTGTTGGCCAAATACAACAACATGGTCACCAGATTCAGTGTTGGccaaacacaacaacatggatacCAGATTCAGTGTTGGCCAAACAACAACATGGTCACCAGATTCAGTGTTGGCCAAATACAACAACATGGTAACCAGATTCAGTGTTGGCCAAATACAACAACATGGATACCAGATTCAGTGTTGGCCAAACAACAACATGGTCACCAGATTCAGTGTTGGCcaaacaacaacatggacaccAGATTCAGAGTTGGCCAAATACAACAACATGGTCACCAGATTCAGAGTTGGCCAAATACAACAACATGGTCACCAGATTCAGAGTTGGCCAGATACAACAACATGGTCACCAGATTCAGAGTTGGCCAGATACAACAACATGGTCACCAGATTCAGAGTTGGCcaaacaacaacatggacaccAGATTCAGTGTTGGAAAAATACAACAACATGGTCACCAGATCCAGAGTTGGccaaacacaacaacatggacaTCAGATTCAGAGTTGGccaaacacaacaacatggacaTCAGATTCAGAGTTGGCCAGATACAACAACATGGACACCAGATTCAGAGTTGGCCAGATACAACAACATGGACACCAGATTCAGAGTTggccaaacaacaacaacatggacaccAGATTCAGAGTTGGccaaacacaacaacatggacacCAGATTCAGTGTTGGCcaaacaacaacatggacaccAGATTCAGAGTTGGccaaacacaacaacatggacacCAGATTCAGAGTTGGccaaacacaacaacatggacacCAGATTCAGAGTTGGCCAGATACAACAACATGGACACCAGATTCAGAGTTGGCCAGATACAACAACATGGACACCAGATTCAGAGTTGGccaaacacaacaacatggacacCAGATTCAGAGTTGGCCAGATACAACAACATGGACACCAGATTCAGAGTTGGccaaacacaacaacatggacacCAGATTCAGAGTTGGccaaacacaacaacatggacacCAGATTCAGAGTTGGCcaaacaacaacatggacaccAGATTCAGAGTTGGCCAGATACAACAACATGGACACCAGATTCAGAGTTGGccaaacacaacaacatggacacCAGATTCAGAGTTGGccaaacacaacaacatggacacCAGATTCAGAGTTGGCcaaacaacaacatggacaccAGATTCAGAGTTGGCCA
>XM_036947743.1
GAGTATTATGAATAAGAAAAAAACACGAACAATTTATTCTGGCAAGACAAGACTGCTCATGCGCTCCCATGATTCACCACCTCAGCTCGCAGAGATGCTGCTGACAATGCGACTCATGAAGAGAAAACGCACTGGTTTGCTGCAGAAGACGTAAGGAATCGAAGGCCGTCGCTTGGCTGACCAGACCACTTGTCCTCAGGAACATAATACATCATCAGAATACCTGGCGTTGAATGTATCTCTGTCATTAATTCAGGTTGGACCTCAATTAAGCGATGCCAGGGATTCCGCCAGCTGCTGCTCCATGCTGTGTAGGAAGAGAACCATAATACAGGAAGTTCTGCTCCTtaaataacaacaacacaccaaCAACTAGCATGTTGCCTCCACACAGAGCAGACGCCCTGCCTgagccctctccctctgcctctgcctctgcctcggcctctccctctccctctccctctccatctgcctctgcctctgcctctccctctccctctccctctcccagcctgaGGAGGGTCCAGGTTCAATGGGCCTTGTACCTCTCCCTGGCCCTCCTCTGGTACCCGTCTGGGGCAGTAGCCTCAACCCTCAACTGCCACAAGACCTGCATCTGTGCCAGTAATATCGTGAGCTGTTCCAAGATGAACCTGACCACAGTGCCCACTGGCCTGCCTCTCTATACGGCCGTCCTGGACCTCAGCTACAACGACGTCTCCCGGCTGAGGGCTGAGTGGACCACGGTGAAACTCACCAAACTCCACAACCTCCTACTCAGTCACAACGGccttcacttcctctcctccgAGGCCTTTGTCTACGTCAAACACCTGCGCTACCTGGACCTGTCCTCCAACGACCTGCGACAGCTGGACGAGTTCATCTTCGAACCGTTGGGGCAgctggagGTGCTGTTGCTCTACAACAACCGTATATCTCAGATTGACCGCTCAGCCTTCCAGGGTCTCCACAGCCTGCAGAAACTCTACCTGTCCCAGAACATGATCTCACGCTTCCCCCTGGAACTGGTCAAGGACAAGACCCGCCTGGAGAAACTCAGCCTGATGGACATCTCATCCAACAGGATCAAGGTTCCACCCATTGAGGAGCTGCAGGTGCTGCCTGCCTGGATAAAGAACGGCCTCTACTTCCACAACAACCCTCTGATCTGTGACTGTAGCCTATATAGTCTCCTGGCCCACTGGCACATCCGCCGGCTCAACTCAGCCCTGGACTTTAAAGATGAGTACAGCTGCTATCTCCCCGGGTCCCAGAAAAGCAGGGTGGGGGTCTTCGACCTCAACAGAGACTACATGAACTGTAGTACGTTCTACGAGGCGGACGAGGAAGCTTGGCTGGAACAGACGCTGATCTTGCGCTGTGATACTAAACACAGAGATCTGTCTAAGACCTGGGTGATGCCTGGCGATGTAGTGGTGACGGAAGGGCTTAATCAGACAGCCAAGGTGCTTCCTGACGGTAGTCTCCAGATCGGTCCGGTGAAGTCGGAGGACTCGGGGACGTACACATGCTACGCTGTGAGCGAAGCCCTCAACGAGACGCTCTACGTGCTGCTCAAGGTGCATAACTTCACGGAGAACGGCAACGGCGAAGCCCTGAACACGGCATACACCACCCTGGTGGGCTGCCTGACCAGCGTGGTCCTAGTGCTCATCTACCTGTACCTGACCCCCTGCCGATGCTTCTGCTGCCCCAAGAAGAACCACGAGGACTCCATCCACTCCTCCATGCTCAGCGCCACACCCAGCCATGAGGACCTGATCAACAACACTGACCCAAGGCATGTGGCCTTCATCGACCCCAAGGAGCTGGGACAGGGGCTGAACGGGAAGGTGAACCCCAACGATGGGGAGGGGgaccagggagagatggatgaggagggagggttactggggaagggaaggaggaagaagTCTGTGGCTGAGTCTATTAGTTCTGTCTTCTCTGACACCCCCATAGTGGTCTGAGATGGTACGGACCGTCGATATGGATGTACGCCGTGACGCGATTGGATGGATCAGGGATGTACGTGGTGTGATTGGATGAAACTGTGACTACTTCCTTGGACAGAAAGCCAATCACAGTTCACTAAACCAACCAATCAGAAGCTTCAGGGGAGTGTCAACACATTGCCTTGGTATTAACAAGGACAACTGACAATAAACAGGACCTTTCTCCAGCATTTGATCTGTAGCACTTAAAATATACATACTGTGAAAGCCTGACAGAGgagtcccactgggcacacactggttgaatccacGTTGTTTAcgcgtcatttcaatgaaattactttGAACCAATGTGCACTAGACGTGgaattgacgtctgtgctcaGTGGAGTGTAAGAGGACACTAATTCCTTCCTGTGGCACAGTAACGGTGGATATCATGTTTGGACGGTAGCAGTACTCAGGAAGACATTGATTGGTGGAGGACCCGAAAATATGAGATTGTGAGCCATTTTAAACTTtgagatgaaaaaaaaaaagggaGATGAATTAATTTTGGAAAATAACATAGTtcgtacatatatatatatatatatatagtcaagTCATGAGCATGAACCTTGTAGACTGACTCATATGTCTATTTAATAATAGGAGTAGACTAGCGTGAGTCTTCTGTAGACTTTAGTACATACAGAACGTACATACGGTAGCtatacacatagaaatagaatgactttATATTACTTCCTGGCATGGGTACATTCATTTTGGCCACCGGGCCACCCATCACAGAACTGACTTGGATGGGAATGTCTGTTCtaataattatatttctatgcatatacccctccaccacccacagacagacagacaggccagagTTGGCCAAATACAACAACATGGTAACCAGATTCAGTGTTGGCCAAATACAACAACATGGTCACCAGATTCAGTGTTGGccaaacacaacaacatggatacCAGATTCAGTGTTGGCCAAACAACAACATGGTCACCAGATTCAGTGTTGGCCAAATACAACAACATGGTAACCAGATTCAGTGTTGGCCAAATACAACAACATGGATACCAGATTCAGTGTTGGCCAAACAACAACATGGTCACCAGATTCAGTGTTGGCcaaacaacaacatggacaccAGATTCAGAGTTGGCCAAATACAACAACATGGTCACCAGATTCAGAGTTGGCCAAATACAACAACATGGTCACCAGATTCAGAGTTGGCCAGATACAACAACATGGTCACCAGATTCAGAGTTGGCCAGATACAACAACATGGTCACCAGATTCAGAGTTGGCcaaacaacaacatggacaccAGATTCAGTGTTGGAAAAATACAACAACATGGTCACCAGATCCAGAGTTGGccaaacacaacaacatggacaTCAGATTCAGAGTTGGccaaacacaacaacatggacaTCAGATTCAGAGTTGGCCAGATACAACAACATGGACACCAGATTCAGAGTTGGCCAGATACAACAACATGGACACCAGATTCAGAGTTggccaaacaacaacaacatggacaccAGATTCAGAGTTGGccaaacacaacaacatggacacCAGATTCAGTGTTGGCcaaacaacaacatggacaccAGATTCAGAGTTGGccaaacacaacaacatggacacCAGATTCAGAGTTGGccaaacacaacaacatggacacCAGATTCAGAGTTGGCCAGATACAACAACATGGACACCAGATTCAGAGTTGGCCAGATACAACAACATGGACACCAGATTCAGAGTTGGccaaacacaacaacatggacacCAGATTCAGAGTTGGCCAGATACAACAACATGGACACCAGATTCAGAGTTGGccaaacacaacaacatggacacCAGATTCAGAGTTGGccaaacacaacaacatggacacCAGATTCAGAGTTGGCcaaacaacaacatggacaccAGATTCAGAGTTGGCCAGATACAACAACATGGACACCAGATTCAGAGTTGGccaaacacaacaacatggacacCAGATTCAGAGTTGGccaaacacaacaacatggacacCAGATTCAGAGTTGGCcaaacaacaacatggacaccAGATTCAGAGTTGGCCA
>TU1607821
TGCTGCTGACAATGCGACTCATGAAGAGAAAACGCACTGGTTTGCTGCAGAAGACGTAAGGAATCGAAGGCCGTCGCTTGGCTGACCAGACCACTTGTCCTCAGGAACATAATACATCATCAGAATACCTGGCGTTGAATGTATCTCTGTCATTAATTCAGGTTGGACCTCAATTAAGCGATGCCAGGGATTCCGCCAGCTGCTGCTCCATGCTGTGTAGGAAGAGAACCATAATACAGGAAGTTCTGCTCCTtaaataacaacaacacaccaaCAACTAGCATGTTGCCTCCACACAGAGCAGACGCCCTGCCTgagccctctccctctgcctctgcctctgcct

Function

NR:

description
PREDICTED: amphoterin-induced protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947742.1 False 4416 mRNA 0.49 5 72754083 72768074
XM_036947743.1 False 4115 mRNA 0.49 5 72754083 72768074
TU1607821 True 346 lncRNA 0.50 2 72754178 72755779

Neighbor

gene id symbol gene type direction distance location
sypl2b LOC106566367 coding upstream 44469 72702438 ~ 72709614 (+)
LOC118939587 NA coding upstream 47079 72706333 ~ 72707004 (+)
ngrn ngrn coding upstream 108075 72641881 ~ 72646008 (+)
LOC110491175 LOC106566388 coding upstream 334723 72371494 ~ 72419360 (+)
LOC110492916 LOC106592833 coding upstream 420751 72236985 ~ 72333332 (+)
LOC110492598 LOC106566362 coding downstream 46273 72808730 ~ 72818165 (+)
LOC110491159 LOC105013496 coding downstream 56921 72824995 ~ 72894201 (+)
LOC110491160 LOC103367831 coding downstream 199053 72967127 ~ 73019850 (+)
LOC110492601 LOC106566372 coding downstream 258820 73026894 ~ 73031749 (+)
LOC110492599 LOC106566375 coding downstream 280056 73048130 ~ 73068867 (+)
G1407505 NA non-coding upstream 2891 72750869 ~ 72751192 (+)
G1407503 NA non-coding upstream 12356 72741223 ~ 72741727 (+)
G1407502 NA non-coding upstream 37104 72716778 ~ 72716979 (+)
G1407501 NA non-coding upstream 41381 72712448 ~ 72712702 (+)
G1407500 NA non-coding upstream 41993 72711830 ~ 72712090 (+)
G1407517 NA non-coding downstream 19098 72787172 ~ 72788181 (+)
G1407521 NA non-coding downstream 27236 72795310 ~ 72795551 (+)
G1407522 NA non-coding downstream 30196 72798270 ~ 72798518 (+)
G1407525 NA non-coding downstream 34996 72803070 ~ 72803331 (+)
G1407558 NA non-coding downstream 90677 72858751 ~ 72859002 (+)
G1407199 LOC106566391 other upstream 474528 72216313 ~ 72279555 (+)
G1407190 NA other upstream 650242 72103386 ~ 72103841 (+)
G1406555 NA other upstream 1337656 71413557 ~ 71416427 (+)
G1406510 NA other upstream 1497106 71255979 ~ 71256977 (+)
G1407566 NA other downstream 143909 72911983 ~ 72929719 (+)
G1408176 NA other downstream 657673 73425747 ~ 73426266 (+)
LOC110491178 LOC106572904 other downstream 892421 73324102 ~ 73662832 (+)
LOC118939588 NA coding downstream 10763 72766542 ~ 72769227 (+)
G1407509 NA other downstream 10123 72765902 ~ 72769218 (+)

Expression


Co-expression Network