XLOC_003251 (si:dkey-23f9.6)


Basic Information

Item Value
gene id XLOC_003251
gene name si:dkey-23f9.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11347031 ~ 11348705 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006418
GTCATTGGCATCTGATCTCGGCGTTCTTCGTGGCAACTTATTCGCAGACTATTGATATTATTGATCGTTGGATACATCGATTGATCGCCTGCTGCTCCCTTCATTCAGGTTTGACCCTTGCTATCACACTGTGGTTTGTATTCAGTATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCCACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGAATACACAGATGATGATGCTCTCATCCCCAAAAACACGTCGGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCCAAATCCTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagAGCACCAGCTCTGCTTCGCACAAGCGCATCAggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGATGGACGGCAGCGGCAAATACGTCATCCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGCCGTCAGCTGGTGC
>TCONS_00006419
ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCCACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGAATACACAGATGATGATGCTCTCATCCCCAAAAACACGTCGGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCCAAATCCTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcaggtga

Function

symbol description
si:dkey-23f9.6 Predicted to enable ubiquitin protein ligase activity and zinc ion binding activity. Predicted to act upstream of or within mRNA processing and protein ubiquitination. Predicted to be located in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000116002

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006418 False 756 mRNA 0.51 6 11347031 11348705
TCONS_00006419 True 429 mRNA 0.51 4 11347177 11348146

Neighbor

gene id symbol gene type direction distance location
XLOC_003249 si:dkey-23f9.4 coding upstream 27178 11303458 ~ 11319853 (+)
XLOC_003248 ptp4a1 coding upstream 72112 11267493 ~ 11274919 (+)
XLOC_003247 myom2a coding upstream 84969 11200550 ~ 11262062 (+)
XLOC_003245 ly75 coding upstream 153826 11120532 ~ 11193205 (+)
XLOC_003246 CR847973.1 coding upstream 165954 11175814 ~ 11181077 (+)
XLOC_003252 BX324177.5 coding downstream 4754 11353459 ~ 11380887 (+)
XLOC_003253 NA coding downstream 10716 11359421 ~ 11359715 (+)
XLOC_003254 si:dkey-23f9.7 coding downstream 11936 11360641 ~ 11362457 (+)
XLOC_003256 si:dkey-23f9.8 coding downstream 25316 11374021 ~ 11375944 (+)
XLOC_003258 si:dkey-23f9.9 coding downstream 38804 11387509 ~ 11389462 (+)
XLOC_003250 BX324177.11 misc upstream 932 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 24181 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 37657 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 69328 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 80688 11429393 ~ 11429689 (+)
XLOC_003264 BX324177.22 misc downstream 92755 11441460 ~ 11441756 (+)
XLOC_003241 NA non-coding upstream 674023 10669135 ~ 10673008 (+)
XLOC_003239 CT990625.1 non-coding upstream 809628 10535456 ~ 10537403 (+)
XLOC_003238 BX005472.1 non-coding upstream 1448401 9898513 ~ 9898630 (+)
XLOC_003237 NA non-coding upstream 1743961 9601745 ~ 9603070 (+)
XLOC_003236 CABZ01079837.1 non-coding upstream 1824958 9511533 ~ 9522073 (+)
XLOC_003268 NA non-coding downstream 155309 11504014 ~ 11513985 (+)
XLOC_003269 CR556712.1 non-coding downstream 239373 11588078 ~ 11590676 (+)
XLOC_003271 CR848705.1 non-coding downstream 443703 11792408 ~ 11796299 (+)

Expression


Co-expression Network