LOC118939467



Basic Information


Item Value
gene id LOC118939467
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 74900487 ~ 74905798 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036945805.1
ATGGAGGGTTCTACAGAGCAACAGTCTCGCTGGATGTCCCTTCCAGCCTTGCTCCCTCCTGAAGCCATGTTTAACTTTACTACAGAGATCACCTCTCTAGACTCTGTCCAGTACCACAGGGCTACGGCCAGTCCAGACTCGCTCCAGCACCACAGGGCTACGGACATTCCAGACTCGCTCCAGTATCACTGGGCTAAGGCCAGTCCAGACTCGCTTCAGTATCACTGGGCTACGGCCAGTCCAGACTCTCTCCAGTACCACAGGGCTACGGCCATTCCAGACTCGCTCCAGTATCACAGGGCAAAGGCCAGTCCAGACTCGCTCCAGTATCACTGGGCTAAGGCCAGTACAGACTCTGCTAAGGCCAGTCCAGACTCTGCTAAGGCCAGTCCAGACTCTGTTCAATACCACAAGGCTACGGCCAGTCCAGACTCGCTCCAGTATCACTGGGCTAAGACCAGTCTAGACTCTGCTAAGGCCAGTCCAGACTCGCTCCAGTATCACTGGGCTAAGGTCAGTCCAGACTCTGCTAAGGCCAGTCCAGACTCTGTTCAGTACCGCTGGGCTACTGCCAGTCCAGACTTTGCTAAGGCCAGTCCAGACTCGCTCCAGTATCACTGGGCTAAGGCCAGTCCAAACTCTGCTAAGGCCAGTCCAGACTCTGTTCAGTTCCACTGGGCTATGGCCAGTCCAGACTCGCTCCAGTATCACTGGGCTAAGGCCAGTCCAGACTCTGTCCAGTACCACAGGGCTAGGGCCAGTCTAGCCACAGACTTCCTGCACCAGCCGTACCACTCAGCTGAGTCTGACTTGGCCAGCCTGCCTTCCTGCATCTCCAGCAGCAGCCATAGTCGGTCTGCACCATCGTACGGACACAGCCCAGTTCACCAGGTGTACTCTTCATCCTCCCACGTCAACGGTAGTGTCCAGTGGTTGGAGCAAGGGGGTTCTGGAGGTCAGTCTCTcagctgctcctcttcctcctggtaCAACAGCCctttctccaccaccaccaccacctcctccttctcctccacaaACTCAATCTCGTCTCTGACCAACCCCAGGGCCGAGCACTACTCCCGAGGGCACGGCTGTCAGGAAATCCAGAGGCTTCAGGAGGCCTTGAAGGGGGAGAGGCTGAGTCCCAGTGAGGACGGAGGTAGCAGTAGTTTCCTGACTCTGAACCCTGCACAAGGGGATGGGTACCCGCACTCTGCCCAGGCCTACGGTCACCCCTTGGGCTTCTACAGCAACTCCTGGGTGTCAGGTCAGGACTACAGCCCCGCCTCTCTTTGCTCCTCCCCTGGTGCTGGCATGTATCCCTCCTACTGCTACTCCCCCAAACTACAAAACAAAATCAACCTCTCCCCTCCAGATGCCCGTGAGTGTGTGAACTGTGGTGGGACCGCCACCCCTCTGTGGCGTCGTGATGGGACAGGACACTACCTCTGTAACGCCTGTGACCACAAGATGAACAGCCAGAACAGACCTCTCACCAGACCCAAGAAGAGGCTGATGGTCAGTAAGAGTGCAGGGACCCATTGCTCCAACTGTCAGACTAGCACCACCACGCTGTGGAGACGTAATGTCAGTGGAAAGACAGTCTGTAACGCATGTGGACTCTACTACAAACTACACAACATCAACAGACCTCTGACCATGAAGAAGGAAGGTACTCAGACACGGAAACGTAAGGCCTCCATTATGAACAACAGGGCCAAGTAGAAGACAGGTGTGTTAGAGGCTGGGTCTCTACTCTGACCTCTCCCTGTCCAGACTCCAGTCTTCTGACATGCCCGACCACACACACTGAGGACTACTACACACACTGAGGACTACTACACA
>TU1610672
acttatgtcatgcaataaaatgctaattttaatcatacaatgtgattttctggatttttgttttagattccgtctctcacagttgaagtgtacctatgataaaaatgacagacctctacatgctttgtaaataggaaaacctgcaaaattggcagtgtatcaaatacttgttctccccactgtatatggctaGGACGTAATCAATTGAACACAATGGGTTTTTAATCATTGAAGTCGAACTGAAGTTTCTCCTAATCAGACGAGCAACACTAGCAACTCAGAGACTCACAGCTTCTTGTGTGGTTGTGTTCTAGTTCACCAGGTGTACTC

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036945805.1 False 1848 mRNA 0.56 5 74900487 74905798
TU1610672 True 330 lncRNA 0.37 1 74903139 74903468

Neighbor


gene id symbol gene type direction distance location
LOC110512152 LOC106566317 coding downstream 143083 74657798 ~ 74757404 (-)
LOC110518683 LOC105027955 coding downstream 449515 74387940 ~ 74450972 (-)
ccm2l ccm2l coding downstream 526416 74339255 ~ 74374071 (-)
LOC110510377 cables2 coding downstream 569378 74217320 ~ 74331109 (-)
LOC118939594 NA coding downstream 683221 74214528 ~ 74217266 (-)
LOC110492703 LOC106566343 coding upstream 18965 74922068 ~ 74984835 (-)
irak1 LOC106566344 coding upstream 80827 74986625 ~ 75015379 (-)
LOC110491183 LOC106566345 coding upstream 123809 75029607 ~ 75046973 (-)
LOC118939468 NA coding upstream 465822 75371620 ~ 75372905 (-)
LOC110492917 LOC106566358 coding upstream 694236 75600034 ~ 75615122 (-)
G1409469 NA non-coding downstream 3504 74896503 ~ 74896983 (-)
G1409457 NA non-coding downstream 12457 74887810 ~ 74888030 (-)
G1409450 NA non-coding downstream 21792 74878077 ~ 74878695 (-)
G1409430 LOC106566333 non-coding downstream 52550 74845104 ~ 74847937 (-)
G1409441 NA non-coding downstream 76708 74823566 ~ 74823779 (-)
G1409768 NA non-coding upstream 65526 74971324 ~ 74973934 (-)
G1409769 NA non-coding upstream 67297 74973095 ~ 74973566 (-)
G1409772 NA non-coding upstream 89048 74994846 ~ 74995261 (-)
G1409752 NA non-coding upstream 111815 75017613 ~ 75024741 (-)
G1409407 NA other downstream 161298 74736433 ~ 74739189 (-)
G1409044 NA other downstream 704536 74195525 ~ 74195951 (-)
rps21 LOC106572905 other downstream 717907 74172873 ~ 74182639 (-)
ppdpfb LOC106566296 other downstream 1123130 73769856 ~ 73777432 (-)
G1409847 NA other upstream 463092 75368890 ~ 75369623 (-)
G1409928 NA other upstream 529256 75435054 ~ 75435540 (-)
G1410190 NA other upstream 849980 75755742 ~ 75756479 (-)
G1410213 NA other upstream 958031 75807474 ~ 75864456 (-)
G1410288 NA other upstream 1034909 75940707 ~ 75941802 (-)
G1409742 NA non-coding upstream 278 74903746 ~ 74903971 (-)

Expression



Co-expression Network