LOC110492917 (LOC106566358)


Basic Information

Item Value
gene id LOC110492917
gene name LOC106566358
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 75600034 ~ 75615122 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036630.1
TCTATGACAACGGCAGTAAACAACATGGCGCCGTGTGTGTGATCTCAACTTCATCACCCCCCCCGTCTCTCGCTGAAAAGTAGAACAACATTCAATACTTTTCTTGGAAATGCGTTGATGAAATGAGTGTATCTCCCGTTTTTTTTAACTGAATTTACGTGATGATAAATGTTTGACATTGAGTGCAGTTTTGTGATTGCTACTGTTGTTGACTGACTGTATGCTACTGTATCAACAGTtcgctgttttaaaaaaaaatatgcaacATTTCAAAAAGTAGCTAACAACCTGTCAAAGTTGTATTTGGTAAGATATACCTATTCATTTTGAAACCAGGAAGGCCTATCGATATGTCGTCAAAAAGTGACAACAAGCTCAGCACCTGTGGCAACCGGAGGAGATCGAGCGCGACTAAAGAGGATGTGAAGCGGATGTGTCCGCAGCAGCGGGCCCGGTACCTGGCCTACGAGGAGCCGCCGAAAGAGGCGAAGACCTGGATGGCGATGTCTCGGCAGCGGGTGTCCGCCTGGGAGTCTTCCGGGGCTGGGGGGAAGAGACATACAACTGTCGGTCATCATCACTGCGACGAGAGGGACGAGGAAGAGAAGAAACGGCAAGACCTGATCATAGGACAGCTGAAGGCCGCGGAAGCCCGCAACAGAGTTCGACAGATGAGACTGCAGTATCGGAGTATGAGGACCCAGGAAATCAATCTAATGATTTCGTGCCAGTCCAGCGCCCAGACCGCCGTCCGTCTTGAGTTGCTGCTGCCAACGGAGGAAAGCAAGATAAATACCATCGATTGTCTGGACAAACTGCAGAGAAAGCGAGTCGAGGAGATCCTGGACGACGAGAAAGGATTGACGATAACCCGCCGTTGAGAGTCGAGACCTGCCGTCCTCCTGCTTTGTAACTGTCCTCCTGCTTTGTAACTGTCCTCCTGCTGTAACTGTCCTCCTGCTGTGTAACCGTCCTCCTGCTTTGTAACTGTCCTCCTGCTTTGTAACCGTCCTCCTGCTGTGTAACTGTCCTCCTGCTGTGTAACTGTCCTCCTGCTGTGTAACTGTCCTCCTGCTGTGTAACTGTCCTCCTGCTTTGTAACTGTCCTCCTGCTTTGTAACTGTCCTCCTGCTTTGTAACTGTCCTCCTGCTTTGTAACCGTCCTCCTGCTTTGTAACCGTCCTCATGCTTTGTAACCGTCCTCCTGCTTTGTAACCGTCCTCCTGCTTTGTAACCGTCCTCCTGCTTTGTAACTGTCCTCCTGCTTTGTAACCGTCCTCCTGCTTTGTAACCGTCCTCCTGCTGTGTAACTGTCCTCCTGCTTTGTAACTGTCCTCCTGCTTTGTAACCGTCCTCCTGCTGTGTAACTGTCCTCCTGCTGTGTAACTGTCCTCCTGCTTTGTAACCGTCCTCATGCTTTGTAACCGTCCTCCTGCTTTGTAACCGTCCTCCTGCTGTGTAACTGTCCTCCTGCTTTGTAACTGTCCTCCTGCTTTGTAACCGTCCTCCTGCTGTGTAACTGTCCTCCTGCTGTGTAACCGTCCTCCTGCTTTGTAACCGTCCTCATGCTTTGTAACCGTCCTCCTGCTTTGTAATCGTCCTCCTGCTGTGTAACCGTCCTCCTGCTGTGTAACCGTCCTCATGCTTTGTAACCGTCCTCCTGCTTTGTAACCGTCCTCCTGCTTTGTAACTGTCCTCCTGCTTTGTAACCGTCCTCCTGCTGTGTAACCGTCCTCCTGCTTTGTAACCGTCCTCCTGCTGTGTAACTGTCCTCCTGCTTTGTAACTGTCCTCCTGCTTTGTAACCGTCCTCCTGCTGTGTAACTGTCCTCTTGCTGTGTAACCGTCCTCCTGCTTTGTAACCGTCCTCCTGCTGTGTAACTGTCCTCCTGCTTTGTAACCGTCCTCCTGCTGTGTAACTGTCCTCCTGCTGTGTAACCGTCCTCCTGCTGTGTAACCGTCCTCCTGCTGTGTAACCGTCCTCCTGCTGTGTAACTGTCCTCCTGCTGTGTAACTGTCCTCCTGCTGTGTAACTGTCCTCCTGTGTAACAAAAAGGGAACTGTCTATTTCACTGCTCTGGCTTCATAGAAACTCGACTGTACATTTTCTTACCGTCTCCGTAACTACTATAACTGCAGTTAGGTCCCCTGCTGCACTCATCGAACAAGCACCTAGAAGTTTATAAACAGCCCTTCCTCCATGACTGCTGCAGTTGGTTTGCTTCTGCTATAAACGGCTGGCTGTGGAAGCCTCCTGGAGAACATTGTCCCTCAACTGGCCCccaattccctttatagtgcactactttagaccaggacccataggggtagtgtactactatagaccagggccctatgggggtagtgtactactatag
>XM_036947815.1
CGTGCTTCAGCCGTAGCGTGCTTCTATGACAACGGCAGTAAACAACATGGCGCCGTGTGTGTGATCTCAACTTCATCACCCCCCCCGTCTCTCGCTGAAAAGAAGGCCTATCGATATGTCGTCAAAAAGTGACAACAAGCTCAGCACCTGTGGCAACCGGAGGAGATCGAGCGCGACTAAAGAGGATGTGAAGCGGATGTGTCCGCAGCAGCGGGCCCGGTACCTGGCCTACGAGGAGCCGCCGAAAGAGGCGAAGACCTGGATGGCGATGTCTCGGCAGCGGGTGTCCGCCTGGGAGTCTTCCGGGGCTGGGGGGAAGAGACATACAACTGTCGGTCATCATCACTGCGACGAGAGGGACGAGGAAGAGAAGAAACGGCAAGACCTGATCATAGGACAGCTGAAGGCCGCGGAAGCCCGCAACAGAGTTCGACAGATGAGACTGCAGTATCGGAGTATGAGGACCCAGGAAATCAATCTAATGATTTCGTGCCAGTCCAGCGCCCAGACCGCCGTCCGTCTTGAGTTGCTGCTGCCAACGGAGGAAAGCAAGATAAATACCATCGATTGTCTGGACAAACTGCAGAGAAAGCGAGTCGAGGAGATCCTGGACGACGAGAAAGGATTGACGATAACCCGCCGTTGAGAGTCGAGACCTGCCGTCCTCCTGCTTTGTAACTGTCCTCCTGCTTTGTAACTGTCCTCCTGCTGTAACTGTCCTCCTGCTGTGTAACCGTCCTCCTGCTTTGTAACTGTCCTCCTGCTTTGTAACCGTCCTCCTGCTGTGTAACTGTCCTCCTGCTGTGTAACTGTCCTCCTGCTGTGTAACTGTCCTCCTGCTGTGTAACTGTCCTCCTGCTTTGTAACTGTCCTCCTGCTTTGTAACTGTCCTCCTGCTTTGTAACTGTCCTCCTGCTTTGTAACCGTCCTCCTGCTTTGTAACCGTCCTCATGCTTTGTAACCGTCCTCCTGCTTTGTAACCGTCCTCCTGCTTTGTAACCGTCCTCCTGCTTTGTAACTGTCCTCCTGCTTTGTAACCGTCCTCCTGCTTTGTAACCGTCCTCCTGCTGTGTAACTGTCCTCCTGCTTTGTAACTGTCCTCCTGCTTTGTAACCGTCCTCCTGCTGTGTAACTGTCCTCCTGCTGTGTAACTGTCCTCCTGCTTTGTAACCGTCCTCATGCTTTGTAACCGTCCTCCTGCTTTGTAACCGTCCTCCTGCTGTGTAACTGTCCTCCTGCTTTGTAACTGTCCTCCTGCTTTGTAACCGTCCTCCTGCTGTGTAACTGTCCTCCTGCTGTGTAACCGTCCTCCTGCTTTGTAACCGTCCTCATGCTTTGTAACCGTCCTCCTGCTTTGTAATCGTCCTCCTGCTGTGTAACCGTCCTCCTGCTGTGTAACCGTCCTCATGCTTTGTAACCGTCCTCCTGCTTTGTAACCGTCCTCCTGCTTTGTAACTGTCCTCCTGCTTTGTAACCGTCCTCCTGCTGTGTAACCGTCCTCCTGCTTTGTAACCGTCCTCCTGCTGTGTAACTGTCCTCCTGCTTTGTAACTGTCCTCCTGCTTTGTAACCGTCCTCCTGCTGTGTAACTGTCCTCTTGCTGTGTAACCGTCCTCCTGCTTTGTAACCGTCCTCCTGCTGTGTAACTGTCCTCCTGCTTTGTAACCGTCCTCCTGCTGTGTAACTGTCCTCCTGCTGTGTAACCGTCCTCCTGCTGTGTAACCGTCCTCCTGCTGTGTAACCGTCCTCCTGCTGTGTAACTGTCCTCCTGCTGTGTAACTGTCCTCCTGCTGTGTAACTGTCCTCCTGTGTAACAAAAAGGGAACTGTCTATTTCACTGCTCTGGCTTCATAGAAACTCGACTGTACATTTTCTTACCGTCTCCGTAACTACTATAACTGCAGTTAGGTCCCCTGCTGCACTCATCGAACAAGCACCTAGAAGTTTATAAACAGCCCTTCCTCCATGACTACTGCAGTTAGGTCCCCTGCTGCACTCATCGAACAAGCACCTAGAAGTTTATAAACAGCCCTTCCTCCATGACTGCTGCAGTTGGTTTGCTTCTGCTATAAACGGCTGGCTGTGGAAGCCTCCTGGAGAACATTGTCCCTCAACTGGCCCccaattccctttatagtgcactactttagaccaggacccataggggtagtgtactactatagaccagggccctatgggggtagtgtactactatag

Function

NR:

description
protein LKAAEAR1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036630.1 False 2377 mRNA 0.50 4 75600034 75615100
XM_036947815.1 True 2216 mRNA 0.52 4 75600034 75615122

Neighbor

gene id symbol gene type direction distance location
LOC118939468 NA coding downstream 227129 75371620 ~ 75372905 (-)
LOC110491183 LOC106566345 coding downstream 553061 75029607 ~ 75046973 (-)
irak1 LOC106566344 coding downstream 584655 74986625 ~ 75015379 (-)
LOC110492703 LOC106566343 coding downstream 615199 74922068 ~ 74984835 (-)
LOC118939467 NA coding downstream 694236 74900487 ~ 74905798 (-)
LOC110492699 tcea2 coding upstream 489087 76104209 ~ 76119590 (-)
LOC110492709 LOC106566328 coding upstream 946135 76561257 ~ 76642094 (-)
usp21 LOC106566311 coding upstream 1042781 76657903 ~ 76693758 (-)
LOC110514470 uba1 coding upstream 1090667 76705789 ~ 76774764 (-)
LOC118939598 LOC106572974 coding upstream 1192029 76807151 ~ 76997020 (-)
G1410036 NA non-coding downstream 2725 75596829 ~ 75597309 (-)
G1410039 NA non-coding downstream 3446 75596286 ~ 75596588 (-)
G1410038 NA non-coding downstream 6014 75592320 ~ 75594020 (-)
G1410002 NA non-coding downstream 16794 75582788 ~ 75583240 (-)
G1410001 NA non-coding downstream 18519 75581189 ~ 75581515 (-)
G1410051 NA non-coding upstream 4212 75619334 ~ 75619603 (-)
G1410057 NA non-coding upstream 21008 75636130 ~ 75636367 (-)
G1410063 NA non-coding upstream 36510 75651632 ~ 75651831 (-)
G1410166 NA non-coding upstream 101880 75717002 ~ 75717246 (-)
G1410178 NA non-coding upstream 121490 75736612 ~ 75737107 (-)
G1409928 NA other downstream 164494 75435054 ~ 75435540 (-)
G1409847 NA other downstream 230411 75368890 ~ 75369623 (-)
G1409430 LOC106566333 other downstream 752097 74845104 ~ 74847937 (-)
G1409407 NA other downstream 860845 74736433 ~ 74739189 (-)
G1409044 NA other downstream 1404083 74195525 ~ 74195951 (-)
G1410190 NA other upstream 140656 75755742 ~ 75756479 (-)
G1410213 NA other upstream 248707 75807474 ~ 75864456 (-)
G1410288 NA other upstream 325585 75940707 ~ 75941802 (-)
G1410456 NA other upstream 445947 76061069 ~ 76061732 (-)

Expression


Co-expression Network