LOC110492699 (tcea2)


Basic Information

Item Value
gene id LOC110492699
gene name tcea2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 76104209 ~ 76119590 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947820.1
GCGACACCTACTGGCTGATGAAAGAAAGGTGTTATTATTCGAGGTCAGGGAGGTGAGTTCAACAgagaggtagatgagtaaaaCGGATTACAGTTTCATGCTGTttataaaaaaaatcacaactATCCAACTAATAGAACGTGATTAGACAGATGTTTGCACACGTTTGGACAGCATTTGGTGAGGTAATGGTTGGGTGAAAGATTCGAGAAATGAACACGCGTCAAACAGCAgattttctgtagtccacaaacTACAAATCCCAACCTCTCTCGCCTTGAACAGAAAAGCAAAGCCACACTTGCGCCGTAGGGAAAGAAGTGGATACGTTGGGGACACAGTAGGGGAAGGGAAAGAGACGAGGTTTTTCAACATAAATGGAGGCTCATCCGTAGCGGTGAGAGAAGAGcagctgcaaaaaaaaaaaaaaaatacaagtcAAAATGGCGAAAGAGCAGGAGGTCGAACGCATTGCTAAAACGCTGGACAAAATGGTGCACAAGAAAAACACGGATGGTGCCATCTATCTGCTGAGGGAACTGAAGAGCATGAAGATGTCTCTGGAGACTCTACAGTCCACCAGGATCGGCATGTCGGTGAACGCTGTGAGGAAGCAGAGTTCAGAGGAAGAGGTCCAGACTCTGGCCAAGTCACTCATCAAGTCCTGGAAGAAACTACTGGATGGTGCTGAGGGGAAGGCtgcggaggagaagaggagggagggctcTCCCCTGAGGTCATCAACGTCCAAGGACAGTCCTGGATCCAGCGACCAGAGCAAGAAACTGCCTGAGCCCCCTACGACCCCCACCACCCCTACGACCCCCACCTCTCCAAAGTTCACCTCCTTCCCCGCTGCCCCCGTCACCACTGACAGCGTACGCACCAAGTGCCGAGAGCTGCTGGTGGCTGCCCTGCAGACCGACGATGACCACAAGACCATTGGAGCAGACACTGACAACTTGGCTGCTCAGATTGAGGATTGTATCTACCAGGAGTTTAAGTCTACAGACCAGAAGTACAAGTCCAGACTGAGGAGCCGTATCTCCAACCTGAAGGACCAGAAGAACCCGGACCTCCGACGCAACGTCCTCGCTGGAAACATCTCTGCTGACCGCATCGCTAACATGGCTGCTGAGGAGATGGCGAGCGCGGAGCTGAAAGAGATGAGGAAGGCTTTGACCAAGGACGCCATCAGAGAGCACCAGCTGTCTAAAGTGGGCGGGACCGAGACGGACATGTTTCAATGTGGCAAATGCAGGGGCAAGAACTGCACCTACACACAGGTGCAGACGCGCAGTGCTGATGAGCCCATGACCACCTTTGTACTGTGTAACGGCTGTGGCAACCGCTGGAAGttCTGTTGAGGAGAAGATATTCTGGATTTGCTAGTAGAAGAGCTGACCTGGATGAAGAAATAAACCTGGACCTAATTTTGTTACAACTGCAGACTGGTTTTTgtgcttattttttttttttttgataccTTGTTTTTACATTTAACTCATAAATCTGTAGAAAATATTTTGCCATTTTGATTTAatatccttttttttttaaaatattaaaTCACACTAGCCTGGGTGCCTTTTCTGGTTCTGTTCACGTGCCTCAACCTCTTATGGAATGTCATGTTTGGTTTGACAACaggttggcaagagcacaaactgTTCTGGGACCAGGCCGAAGTTGAACACTTGCTCTTAAAACAACATTTTGGTTTGCTGTTCATTAGTTGAAAGCGCTATCTTACTAAAAAAAACAATCttaattttgggggggggggggtgcctttCTTTGCCCCTCTGTGCCACAAATGATCATTTTACTGTTAGTTTTATACACTTGCtgtatttagagtgtttatacaCTCTTAGCAtaagtcccaaatgccaccctattccctgtagtgcactataaagggaatgagGTACCATTTGGATACGTACTTGCTGTATATAGAACAAGCCGTTGTTTCACTTTATTCTGAATCTACAGTCTTACTAATTCAGTACCACTCAAACTCTGAAATGGAcgaatatggaatcatgtagtaaccaaaaaaataaagtgttcaacaaatcaaaata
>TU1611591
accgtgtgtgtgcgtgcagcgtcgttctccttcactctccctgcTTCACGTATCTACCAGGAGTTTAAGTCTACAGACCAGAAGTACAAGTCCAGACTGAGGAGCCGTATCTCCAACCTGAAGGACCAGAAGAACCCGGACCTCCGACGCAACGTCCTCGCTGGAAACATCTCTGCTGACCGCATCGCTAACATGGCTGCTGAGGAGATGGCGAGCGCGGAGCTGAAAGAGATGAGGAAGGCTTTGACCAAGGACGCCATCAGAGAGCACCAGCTGTCTAAAGTGGGCGGGACCGAGACGGACATGTTTCAATGTGGCAAATGCAGGGGCAAGAACTGCACCTACACACAGGTGCAGACGCGCAGTGCTGATGAGCCCATGACCACCTTTGTACTGTGTAACGGCTGTGGCAACCGCTGGAAGttCTGTTGAGGAGAAGATATTCTGGATTTGCTAGTAGAAGAGCTGACCTGGATGAAGAAATAAACCTGGACCTAATTTTGTTACAACTGCAGACTGGTTTTTgtgcttattttttttttttttgataccTTGTTTTTACATTTAACTCATAAATCTGTAGAAAATATTTTGCCATTTTGATTTAatatccttttttttttaaaatattaaaTCACACTAGCCTGGGTGCCTTTTCTGGTTCTGTTCACGTGCCTCAACCTCTTATGGAATGTCATGTTTGGTTTGACAACaggttggcaagagcacaaactgTTCTGGGACCAGGCCGAAGTTGAACACTTGCTCTTAAAACAACATTTTGGTTTGCTGTTCATTAGTTGAAAGCGCTATCTTACTAAAAAAAACAATCttaattttgggggggggggggtgcctttCTTTGCCCCTCTGTGCCACAAATGATCATTTTACTGTTAGTTTTATACACTTGCtgtatttagagtgtttatacaCTCTTAGCAtaagtcccaaatgccaccctattccctgtagtgcactataaagggaatgagGTACCATTTGGATACGTACTTGCTGTATATAGAACAAGCCGTTGTTTCACTTTATTCTGAATCTACAGTCTTACTAATTCAGTACCACTCAAACTCTGAAATGGAcgaatatggaatcatgt

Function

symbol description
tcea2 Predicted to enable translation elongation factor activity and zinc ion binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated; transcription, DNA-templated; and translational elongation. Predicted to be located in nucleus. Is expressed in lens; olfactory placode; and peripheral olfactory organ. Orthologous to human TCEA2 (transcription elongation factor A2).

NR:

description
transcription elongation factor A protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947820.1 False 2090 mRNA 0.46 10 76104209 76119590
TU1611591 True 1117 TUCP 0.44 4 76104247 76111098

Neighbor

gene id symbol gene type direction distance location
LOC110492917 LOC106566358 coding downstream 489087 75600034 ~ 75615122 (-)
LOC118939468 NA coding downstream 731304 75371620 ~ 75372905 (-)
LOC110491183 LOC106566345 coding downstream 1057236 75029607 ~ 75046973 (-)
irak1 LOC106566344 coding downstream 1088830 74986625 ~ 75015379 (-)
LOC110492703 LOC106566343 coding downstream 1119374 74922068 ~ 74984835 (-)
LOC110492709 LOC106566328 coding upstream 441667 76561257 ~ 76642094 (-)
usp21 LOC106566311 coding upstream 538313 76657903 ~ 76693758 (-)
LOC110514470 uba1 coding upstream 586199 76705789 ~ 76774764 (-)
LOC118939598 LOC106572974 coding upstream 687561 76807151 ~ 76997020 (-)
LOC110492706 LOC106566322 coding upstream 982490 77102080 ~ 77104717 (-)
G1410470 NA non-coding downstream 1989 76101027 ~ 76102220 (-)
G1410468 NA non-coding downstream 3353 76099667 ~ 76100856 (-)
G1410465 NA non-coding downstream 10157 76091431 ~ 76094052 (-)
G1410428 NA non-coding downstream 83742 76020052 ~ 76020467 (-)
G1410422 NA non-coding downstream 95893 75997919 ~ 76008316 (-)
G1410478 NA non-coding upstream 8191 76127781 ~ 76128095 (-)
G1410495 NA non-coding upstream 75154 76194744 ~ 76195033 (-)
G1410518 NA non-coding upstream 88638 76208228 ~ 76252231 (-)
G1410520 NA non-coding upstream 90973 76210563 ~ 76214924 (-)
G1410557 NA non-coding upstream 133631 76253221 ~ 76311947 (-)
G1410456 NA other downstream 42477 76061069 ~ 76061732 (-)
G1410288 NA other downstream 162407 75940707 ~ 75941802 (-)
G1410213 NA other downstream 239753 75807474 ~ 75864456 (-)
G1410190 NA other downstream 347730 75755742 ~ 75756479 (-)
G1409928 NA other downstream 668669 75435054 ~ 75435540 (-)
G1410487 LOC106566354 other upstream 45053 76164643 ~ 76165488 (-)
G1410696 NA other upstream 437450 76557040 ~ 76558174 (-)
G1410701 NA other upstream 523190 76642780 ~ 76645664 (-)
G1410773 NA other upstream 672830 76792420 ~ 76795053 (-)

Expression


Co-expression Network