usp21 (LOC106566311)


Basic Information

Item Value
gene id usp21
gene name LOC106566311
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 76657903 ~ 76693758 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947828.1
TACAGCCGGTGATGGTTGGAGACCTGACAGACTACAGCATTACAGCCGGTGATGGTTGGAGACCTGACAGACTACAGCCGGTGATGGTTGGAGACCTGACAGACTACAGCCGGTGATGGTTGGAGACCTGACAGACTACAGCATTACAGCCGGTGATGGTTGGAGACCTGACAGACTACAGCCGGTGATGGTTGGAGACCTGACAGACTACAGCCGGTGATGGTTGGAGACCTGACAGACTACAGCCGGTGATGGTTGGAGACCTGACAGACTACAGCATTACAGCCGGTGATGGTTGGAGACCTGACAGACTACAGCCGGTGATGGTTGGAGACCTGACAGACTACAGCATTACAGCGGGTCATGGTTGGAGTAGAGGAGATATATCAATTAAACAACCAGAAGCCTCGTTGACTTGAACCAGCAACCTAGCCGATACAGGAccaggagaccagtcaactcatTAGTTTCTGCGCCGTAGAGTTGGGGACCTCTTTGACTGTGGTAACGATGCCGGCAGAAACGCGTGTCACCGTGGACGGGACCTGCCAGGCTCTGTGCAAAACCCTTGTCTCTCAGAATGGGATCCAGAGAAACACGGCTGACATCTCCAAGTCTCTCCTCTACACATCACTGATGGGGCTGCTACTGGTTGTAGACAAAGAGAAAGAAAAGCTCAAGGTTGGGAGTGGAAGAGTCGGCCTTCGTAACGTAGGAAACACGtgttttCTGAATGCGGTGGTTCAGTGTCTATCTCACACCAGAGGTCTGAGGGACTACTGTCTGGTCAAAGCCTACAGACAGGAGATGTGCAGTAGAGAGGAACCACACCTCATGGAGGCGTTCTCCCAGGTGCTGTTGAGTCTCTGGGACGTGAACGAAGAAAACCATAACACAGAAGTGAATCCTGGGAAGTTCTACAGCATCTTCAAAGACGCGGTGCCTTACTTCAGCGGATACAGTCAACAGGATGCTCAGGAGTTTCTGAGGTTCTTATTGGACAGGCTTCACTGTGAGATCAACCGCCGGCCGTACGTCCGGCTCACCAGCCTGGAGCCTGAACCCAAATGCACCACAGTCAGgattGACGAGCAGGCGTCTGCAATGTGGAAGAGACACCTGGAGAGGGACGACAGTAAGATCGTAGatctgtTTACAGGTCAGCTGCGTAGTTCTCTCCACTGCTCTGTGTGTTCTCACTACTCCACCTGCTTCGACGTCTTCTGCGACCTGTCTCTACCCGTCCCTAAGAGGAGTGCAGCAGGGGGCGGGTCTCTGAGGGAGTGTCTTGATCTGTTCACACAGGAAGAGAAGCTGGACGAGGAGAACGCTCCCATGTGCGAGAGGTGTAACAGACGGACAGAGAGCACCAAGAGGCTGACCATCCAGAGATTCCCACAGGTCATCGTCATGCATCTGAACCGGTTTGCCATGTCGCGGTATATGGTGTGTAGGAGTACAGTGTGTGTCTCCTTCCCTCTGACCAGCCTGGATTTGGGGCCCTACGGACCGGTTGACTGTggtccCGTGTTGTATGATCTGTATGCAGTGTGTAACCACAGTGGGACAGTCAACATGGGCCACTACACAGCCTGTTGCCTGGAGAACGACGGATCGGGATGGTGCTGTTACAACGACTCCTGTGTGACTCCTATATCAGAGAACCAACTGCAGTCTGCTCAGGCCTACGTCCTCTTCTACCAACGCAGGAAGTGAACCATCGGGTAGCCAATCACTACAGCTGTAACTGCAAGCATAGCATTCAGCAGCCAATCAGAAAAACTGTTACTACAAGCAGAGCTTTCAGCAGCCAATCGCTACAGCTGTTACTACAAATGGAATATTACAAACAGCTGTGATGTAGCGCTATTGTAACCAAGCAACCAGCATCTCAACCAACTGGTCTGATGTTGGACTACTTGAGGTTTGAGTGAGTGTGAGTCTGGGACAAAGACAGCACAAAGCGATAGGAAGACAGAAGAATGGAATAGACGGcttgggtgaggagaggagaaagagaagaccAGTGTAGGAGTGTTCCTAGCCAGCTCAGCtaggagcatgtgtgtgtgtgtgtgtagaccttcagttcaaacagacagttatcattggacacacacacacagccatgagGAAACATGTTATCGGACACTATTAACTTGTGCTACACACCAACTAACCAACTATCAGACAGAGAAGCCTTCAGAATATGCTGTGTTATAATAGTCTAGACGACGTCTGTACTGGTAGAAACattaattaaaaacatttttaaaaaagtcgctttttatttttatgctgctaaaaatatatatatacatttttctaaatTAACAATTATTTAAATTATAATTTATTTAAATAATCACTTGTTTTTCCTTTCTTATTTAacttaattcatttgattaaaaTGTGGAGAGTTTTGTTCCGCTTTTTCTTGTCAAGTGCAAACGTAAATAAAACTGGTGAGTTGGTATGACGTTATATTTAAATAAAACTGGTGAGTTGGTATGACGTTATATTTAAATAAAACTGGTGAGTTGGTATGACGTTATATTT

Function

NR:

description
ubiquitin carboxyl-terminal hydrolase 21-like

GO: NA

KEGG:

id description
K21634 USP21; ubiquitin carboxyl-terminal hydrolase 21

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947828.1 True 2559 mRNA 0.48 12 76657903 76693758

Neighbor

gene id symbol gene type direction distance location
LOC110492709 LOC106566328 coding downstream 15809 76561257 ~ 76642094 (-)
LOC110492699 tcea2 coding downstream 538313 76104209 ~ 76119590 (-)
LOC110492917 LOC106566358 coding downstream 1042781 75600034 ~ 75615122 (-)
LOC118939468 NA coding downstream 1284998 75371620 ~ 75372905 (-)
LOC110491183 LOC106566345 coding downstream 1610930 75029607 ~ 75046973 (-)
LOC110514470 uba1 coding upstream 12031 76705789 ~ 76774764 (-)
LOC118939598 LOC106572974 coding upstream 113393 76807151 ~ 76997020 (-)
LOC110492706 LOC106566322 coding upstream 408322 77102080 ~ 77104717 (-)
LOC110491186 LOC106572997 coding upstream 444931 77138689 ~ 77144798 (-)
ikbkg LOC106572992 coding upstream 800102 77493860 ~ 77582658 (-)
G1410732 NA non-coding downstream 2826 76651871 ~ 76655077 (-)
G1410726 NA non-coding downstream 27083 76630512 ~ 76630820 (-)
G1410725 NA non-coding downstream 27467 76630236 ~ 76630436 (-)
G1410724 NA non-coding downstream 27721 76629752 ~ 76630182 (-)
G1410722 NA non-coding downstream 31470 76626206 ~ 76626433 (-)
G1410734 NA non-coding upstream 6726 76700484 ~ 76703457 (-)
G1410750 NA non-coding upstream 54476 76748234 ~ 76749205 (-)
G1410753 NA non-coding upstream 63902 76757660 ~ 76757962 (-)
G1410763 NA non-coding upstream 81531 76775289 ~ 76775541 (-)
G1410771 NA non-coding upstream 85760 76779518 ~ 76795451 (-)
G1410701 NA other downstream 12239 76642780 ~ 76645664 (-)
G1410696 NA other downstream 99729 76557040 ~ 76558174 (-)
G1410557 NA other downstream 345956 76253221 ~ 76311947 (-)
G1410487 LOC106566354 other downstream 492415 76164643 ~ 76165488 (-)
G1410773 NA other upstream 98662 76792420 ~ 76795053 (-)
G1410776 LOC106591762 other upstream 101825 76795583 ~ 76797111 (-)
G1410911 NA other upstream 267712 76961470 ~ 76972119 (-)
G1411281 NA other upstream 471700 77165458 ~ 77165823 (-)
G1411366 NA other upstream 655795 77349553 ~ 77351225 (-)

Expression


Co-expression Network